BAC Information

Click to search

BAC

Clone NameB6Ng01-315E01
Chromosome9 (Build37)
Map Location 16,995,985 - 16,997,133
singlet/doubletsinglet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E01.bB6Ng01-315E01.g
ACCGA105951GA105952
length1,194955
definitionB6Ng01-315E01.b B6Ng01-315E01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctttcttctatctttctttctttctttctttctttctttct
ttcttgcttgcttgcttgcttgcttgcttgcttgcttgcttttccttctg
atatttcaatttaaatttaaatagcttaagtctataaaacaacattttat
tcttaaatgaatggcatctgattaaaatacgagtgtcctgaacgcatgat
ttttgagaacatatggctattattgaagacaaacgtacaccaaaagttca
agttggctcattcacaggatacttcaccaagacttagcactgtgacagaa
tagagggttttataagcagggctgaaaacagttcaccgtgagtgatcttc
cttataggggtgtgaacaaagacacacctgagtgagttcatgtgctcatt
atgatttcttacaaagaagcagtctgaagtttaattgactagtatttact
aaaatcagttgacacaatgaatgcataggctttgcttttctggtaaatgg
tattaaagtaagtactaaaaagtgtccagccttccttgactagcagcagc
taagtgccttgaaaatctaatttatgtgtgattcagtgtctcaggaagat
tgccagctatcctgcaatggaaagaaaaagctgcttagagtttccaggtt
gtatgttgaacttactcatcagtttgatgatccatggcaacctcaaagac
tgaataaagttgttgttaaatgtgcagggctctcattggaaattaaaacc
ataagcttgtgggagtggccagaaactggtctaatttgaggcccacacta
caagaggaagcccatgtgggacacttcctagataaccaggaattggcagc
tggatagctcagaagcccagggtagaacaaaatatgactagcaaaacaaa
acaaaagaaatttaaaacatacaaaaacaatgacatgatttctaatgtat
tctgtaatactcataaatttgggtgcttgtccagttgtttttcagataag
gctgcagcctgaatagaaggtagaagcaggaaaacccacaatcgaaacat
taaggtgaagaggaggagcttgccatattgttaagcacgaaagaattggg
cccttaggtccgggcccaatccactggggagagaagagttccccttaggt
aattggccaaacctatatatgcccccacgttaccaggggaacgc

gaattcatctgtagctggaagattcccaagtatggcttctgtggggttca
gcacttgtctctggatctcagcatgtgtcttgggagtcttcagtcagatg
aggtttttggagaaaggcagctttgttgtctgtaggtctcaggagatggt
gctgtctcagctggatctgtggcagcaggtaccatgtggagatagacctg
tggagtaattgtagcagaggagcagaaccccagtagggtatgtccgcata
gggtagatagcagacattatgcctgcaatggcttggttgggaacacatca
cagtctgctttggatggctgagtgtactggctagttttgtgtcaacttga
cacagctggagttatcacagagaaaggaacttcagttgaggaaatggctc
catgagatccaactgtaaggcatttgcttaattactgatcaaggggggga
ggccccttgtgggtgcgaccatttctcggctggtagtcttggattctata
agaaagcaggctgagcaagccaggggaagcaagccagtaatgaacatctc
tctatggcctctgcatcagctccagcttcctgacctgcttgagttccagt
cctgacttcctaggtgatgaacagcagtatggaagtgtaagctcaataaa
ccctttcctccccaagtgcttcttggtcatgatgtttttgcaggaataga
aaccctgactaagacactaaggaagaaaatattatggtaatcgtgtatct
gggttaggcagtaatagtttgtctgtaaaaggaaactggttattaaaagg
attgaatgatggtaatcagcccagttgattggatctgtagaagtagaata
gacgacttttgaacccttaaaggaaatgttaaacaagttgagagattttt
tttttttttgggacatatgtcatgaatgttagagggaaattaagcattta
aataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16995985_16997133
seq2: B6Ng01-315E01.b_45_1238

seq1  GAATTCTTTCTTTCTTCTATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCTTCTATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50

seq1  TTCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTTTCCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTTTCCTTCTG  100

seq1  ATATTTCAATTTAAATTTAAATAGCTTAAGTCTATAAAACAACATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAATTTAAATTTAAATAGCTTAAGTCTATAAAACAACATTTTAT  150

seq1  TCTTAAATGAATGGCATCTGATTAAAATACGAGTGTCCTGAACGCATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATGAATGGCATCTGATTAAAATACGAGTGTCCTGAACGCATGAT  200

seq1  TTTTGAGAACATATGGCTATTATTGAAGACAAACGTACACCAAAAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAACATATGGCTATTATTGAAGACAAACGTACACCAAAAGTTCA  250

seq1  AGTTGGCTCATTCACAGGATACTTCACCAAGACTTAGCACTGTGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTCATTCACAGGATACTTCACCAAGACTTAGCACTGTGACAGAA  300

seq1  TAGAGGGTTTTATAAGCAGGGCTGAAAACAGTTCACCGTGAGTGATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTTTTATAAGCAGGGCTGAAAACAGTTCACCGTGAGTGATCTTC  350

seq1  CTTATAGGGGTGTGAACAAAGACACACCTGAGTGAGTTCATGTGCTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGGGTGTGAACAAAGACACACCTGAGTGAGTTCATGTGCTCATT  400

seq1  ATGATTTCTTACAAAGAAGCAGTCTGAAGTTTAATTGACTAGTATTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTTACAAAGAAGCAGTCTGAAGTTTAATTGACTAGTATTTACT  450

seq1  AAAATCAGTTGACACAATGAATGCATAGGCTTTGCTTTTCTGGTAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTTGACACAATGAATGCATAGGCTTTGCTTTTCTGGTAAATGG  500

seq1  TATTAAAGTAAGTACTAAAAAGTGTCCAGCCTTCCTTGACTAGCAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTAAGTACTAAAAAGTGTCCAGCCTTCCTTGACTAGCAGCAGC  550

seq1  TAAGTGCCTTGAAAATCTAATTTATGTGTGATTCAGTGTCTCAGGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCTTGAAAATCTAATTTATGTGTGATTCAGTGTCTCAGGAAGAT  600

seq1  TGCCAGCTATCCTGCAATGGAAAGAAAAAGCTGCTTAGAGTTTCCAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTATCCTGCAATGGAAAGAAAAAGCTGCTTAGAGTTTCCAGGTT  650

seq1  GTATGTTGAACTTACTCATCAGTTTGATGATCCATGGCAACCTCAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGAACTTACTCATCAGTTTGATGATCCATGGCAACCTCAAAGAC  700

seq1  TGAATAAAGTTGTTGTTAAATGTGCAGGGCTCTCATTGGAAATTAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGTTGTTGTTAAATGTGCAGGGCTCTCATTGGAAATTAAAACC  750

seq1  ATAAGCTTGTGGGAGTGGCCAGAAACTGGTCTAATTTGAGGCCCACACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTGTGGGAGTGGCCAGAAACTGGTCTAATTTGAGGCCCACACTA  800

seq1  CAAGAGGAAGCCCATGTGGGACACTTCCTAGATAACCAGGAATTGGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAAGCCCATGTGGGACACTTCCTAGATAACCAGGAATTGGCAGC  850

seq1  TGGATAGCTCAGAAGCCCAGGGTAGAACAAAATATGACTAGCAAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCTCAGAAGCCCAGGGTAGAACAAAATATGACTAGCAAAACAAA  900

seq1  ACAAAAGAAA-TTAAAACATACAAAAACAATGACATGATTTCTAATGTAT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAATTTAAAACATACAAAAACAATGACATGATTTCTAATGTAT  950

seq1  TCTGTAATACTCATAA--TTTGGTGCTTGTCCAGTTG-TTTTCAGAT-AG  995
      ||||||||||||||||  || |||||||||||||||| ||||||||| ||
seq2  TCTGTAATACTCATAAATTTGGGTGCTTGTCCAGTTGTTTTTCAGATAAG  1000

seq1  GCTGCAG-CTG-ATAGAA-GTAGAAGCAG--AAACCCACAATCG-AACAT  1039
      ||||||| ||| |||||| ||||||||||  ||||||||||||| |||||
seq2  GCTGCAGCCTGAATAGAAGGTAGAAGCAGGAAAACCCACAATCGAAACAT  1050

seq1  T-AGGTGAAGAG--AGAGCT--GCATA-TGT--AGC-----AGAAGATGG  1076
      | ||||||||||   |||||   |||| |||  |||     ||||   ||
seq2  TAAGGTGAAGAGGAGGAGCTTGCCATATTGTTAAGCACGAAAGAATTGGG  1100

seq1  CC--TA-GTC--GGCC--AT-CACTGGGAAGAGA----GTCCCCTTAG--  1112
      ||  || |||  ||||  || ||||||| |||||     |||||||||  
seq2  CCCTTAGGTCCGGGCCCAATCCACTGGGGAGAGAAGAGTTCCCCTTAGGT  1150

seq1  TATTG--CAAA-CTTTATATGCCCC--AGT--ACAGGGGAACGC  1149
       ||||  |||| || ||||||||||   ||   |||||||||||
seq2  AATTGGCCAAACCTATATATGCCCCCACGTTACCAGGGGAACGC  1194


| Home | SequenceCutter | Blast | Download |