BAC Information

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BAC

Clone NameB6Ng01-315L09
Chromosome9 (Build37)
Map Location 93,664,692 - 93,775,667
singlet/doubletdoublet
Overlap geneLOC674371
Upstream geneLOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315L09.bB6Ng01-315L09.g
ACCGA106285GA106286
length4491,101
definitionB6Ng01-315L09.b B6Ng01-315L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,664,692 - 93,665,146)(93,774,561 - 93,775,667)
sequence
taattaggaaaaagacagacaacaaggaaaattacaaatgttcttatgct
gtaccattcacaaaaataagctgtatttactggcatttccttgtcttctc
catgtagcttattaattttctctacccttgttagactataaatagaacac
agttaaattagtcctttagtgggaataagatgaaatgaagtctttgaacc
tgggaatcatcatgttcttgaagaatgtcagtgttggctgatgaatctta
aagaaagcaacttgggaggcagaggcaggcagaatctgagtttgaggcca
gcctggtttacaaagtgagttccagaacagccagggctacacagagaaac
cctgcctccaggggaaaaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga

gaattcattaggaaatagtttatgtctctgaacctcacttcccaacattt
ctttgttcccaacacaacatcatgtgtctttatctagtttacgttgaact
gtgttatttctcatatctagttaacactgagctaaaagcacacagagctt
tcactacaggtaaagctaattaaagttaatttaatactcatagggtatcc
ggatctcttaaaagtcttatttgaagatttggaccaaagaatctaacaaa
agccagatcactatctataagtcttctaagaaagatgtaaattaaacaag
gaaccacttggaattcatgctgtgtcaactccagaatgacaaatgtttta
ctagtggcatgataagcttcatccaacagaaataggagaaaggattttta
agagaataaaagcactgaaaaacatggccagacccaagagctgttacttc
ttttaattttccacctcattaacatctcagatggggatagctgaacatgc
agaatttatgcccctttattattaaatacttccctataagctccggtttt
gtcctcagggtatgtgtctgaatgcattcgagtgtctacaaagtgtttta
cagtcttccacatagttcactggagccacaataaaaataataaaactatt
attgtaggatgatttaccaaacatagaattcaagaaattagctgtgaagt
tcccattatttacaattaaaaacacctaaagcctctgctatttcctacct
ggaaaaaagtgggctattgaatttgtcatcatatacgaagaagaaagaaa
gaaaaaagcaaaacaaagaatggggcttgctactcaaggtcttgcaacaa
attaacaccatgagaaatccttaacgttttctgactcctaaatttctttc
agattagaaaacatttcttccaagttcattagtttttctcactgttcctg
atactaaactcctggtttaactcagttttcaaaatctagtgcttgtaata
atgtgtatttttatgctcactgagtgaatgtgcaccctggagagcagcct
ctcaactatttaatcattttgtcacatgcataatgaagttacccaaggtc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93664692_93665146
seq2: B6Ng01-315L09.b_48_502

seq1  GAATTCTAATTAGGAAAAAGACAGACAACAAGGAAAATTACAAATGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTAGGAAAAAGACAGACAACAAGGAAAATTACAAATGTTCT  50

seq1  TATGCTGTACCATTCACAAAAATAAGCTGTATTTACTGGCATTTCCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTACCATTCACAAAAATAAGCTGTATTTACTGGCATTTCCTTGT  100

seq1  CTTCTCCATGTAGCTTATTAATTTTCTCTACCCTTGTTAGACTATAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATGTAGCTTATTAATTTTCTCTACCCTTGTTAGACTATAAATA  150

seq1  GAACACAGTTAAATTAGTCCTTTAGTGGGAATAAGATGAAATGAAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGTTAAATTAGTCCTTTAGTGGGAATAAGATGAAATGAAGTCTT  200

seq1  TGAACCTGGGAATCATCATGTTCTTGAAGAATGTCAGTGTTGGCTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGGAATCATCATGTTCTTGAAGAATGTCAGTGTTGGCTGATGA  250

seq1  ATCTTAAAGAAAGCAACTTGGGAGGCAGAGGCAGGCAGAATCTGAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAGAAAGCAACTTGGGAGGCAGAGGCAGGCAGAATCTGAGTTTG  300

seq1  AGGCCAGCCTGGTTTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGCCAGCCTGGTTTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAG  350

seq1  AGAAACCCTGCCTCCAGGGGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGCCTCCAGGGGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAG  400

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  450

seq1  GAAGA  455
      |||||
seq2  GAAGA  455


seq1: chr9_93774561_93775667
seq2: B6Ng01-315L09.g_66_1166 (reverse)

seq1  TGACC-TGGGTA--CTCATTAATGCATGTGACAAAATGA-TAAATAGGTT  46
      ||||| ||||||   ||||| |||||||||||||||||| |||||| |||
seq2  TGACCTTGGGTAACTTCATT-ATGCATGTGACAAAATGATTAAATA-GTT  48

seq1  GAGAAGCTGGCTCTCCAGGGTGCCACATTCAACTCAGTGAAGCAT-AAAA  95
      |||| ||| ||||||||||||| ||||||| |||||||| ||||| ||||
seq2  GAGAGGCT-GCTCTCCAGGGTG-CACATTC-ACTCAGTG-AGCATAAAAA  94

seq1  TACAACAATTATTACAAAGCACTAGATTTTGAAAACCTGAGTTAAAACCA  145
      ||||   |||||||| ||||||||||||||||||| ||||||| ||||||
seq2  TACA--CATTATTAC-AAGCACTAGATTTTGAAAA-CTGAGTT-AAACCA  139

seq1  GGAGTTTAGTATCAGGAACAGTGAG-AAAACTAATGAACTTGGAAGAAAT  194
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGTTTAGTATCAGGAACAGTGAGAAAAACTAATGAACTTGGAAGAAAT  189

seq1  GTTTTCTAATCCTGAAAGAAATTTAGGAGTCAGAAAACGTTAAGGATTTC  244
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAAT-CTGAAAGAAATTTAGGAGTCAGAAAACGTTAAGGATTTC  238

seq1  TCATGGTGTTAATTTGTTGCAAGACCTTGAGTAGCAAGCCCCATTCTTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTTAATTTGTTGCAAGACCTTGAGTAGCAAGCCCCATTCTTTG  288

seq1  TTTTGCTTTTTTCTTTCTTTCTTCTTCGTATATGATGACAAATTCAATAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTTTCTTTCTTTCTTCTTCGTATATGATGACAAATTCAATAG  338

seq1  CCCACTTTTTTCCAGGTAGGAAATAGCAGAGGCTTTAGGTGTTTTTAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTTTTCCAGGTAGGAAATAGCAGAGGCTTTAGGTGTTTTTAATT  388

seq1  GTAAATAATGGGAACTTCACAGCTAATTTCTTGAATTCTATGTTTGGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATGGGAACTTCACAGCTAATTTCTTGAATTCTATGTTTGGTAA  438

seq1  ATCATCCTACAATAATAGTTTTATTATTTTTATTGTGGCTCCAGTGAACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTACAATAATAGTTTTATTATTTTTATTGTGGCTCCAGTGAACT  488

seq1  ATGTGGAAGACTGTAAAACACTTTGTAGACACTCGAATGCATTCAGACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGACTGTAAAACACTTTGTAGACACTCGAATGCATTCAGACAC  538

seq1  ATACCCTGAGGACAAAACCGGAGCTTATAGGGAAGTATTTAATAATAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGAGGACAAAACCGGAGCTTATAGGGAAGTATTTAATAATAAAG  588

seq1  GGGCATAAATTCTGCATGTTCAGCTATCCCCATCTGAGATGTTAATGAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAATTCTGCATGTTCAGCTATCCCCATCTGAGATGTTAATGAGG  638

seq1  TGGAAAATTAAAAGAAGTAACAGCTCTTGGGTCTGGCCATGTTTTTCAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTAAAAGAAGTAACAGCTCTTGGGTCTGGCCATGTTTTTCAGT  688

seq1  GCTTTTATTCTCTTAAAAATCCTTTCTCCTATTTCTGTTGGATGAAGCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATTCTCTTAAAAATCCTTTCTCCTATTTCTGTTGGATGAAGCTT  738

seq1  ATCATGCCACTAGTAAAACATTTGTCATTCTGGAGTTGACACAGCATGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCACTAGTAAAACATTTGTCATTCTGGAGTTGACACAGCATGAA  788

seq1  TTCCAAGTGGTTCCTTGTTTAATTTACATCTTTCTTAGAAGACTTATAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGGTTCCTTGTTTAATTTACATCTTTCTTAGAAGACTTATAGA  838

seq1  TAGTGATCTGGCTTTTGTTAGATTCTTTGGTCCAAATCTTCAAATAAGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCTGGCTTTTGTTAGATTCTTTGGTCCAAATCTTCAAATAAGAC  888

seq1  TTTTAAGAGATCCGGATACCCTATGAGTATTAAATTAACTTTAATTAGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAGATCCGGATACCCTATGAGTATTAAATTAACTTTAATTAGCT  938

seq1  TTACCTGTAGTGAAAGCTCTGTGTGCTTTTAGCTCAGTGTTAACTAGATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTAGTGAAAGCTCTGTGTGCTTTTAGCTCAGTGTTAACTAGATA  988

seq1  TGAGAAATAACACAGTTCAACGTAAACTAGATAAAGACACATGATGTTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAACACAGTTCAACGTAAACTAGATAAAGACACATGATGTTGT  1038

seq1  GTTGGGAACAAAGAAATGTTGGGAAGTGAGGTTCAGAGACATAAACTATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAACAAAGAAATGTTGGGAAGTGAGGTTCAGAGACATAAACTATT  1088

seq1  TCCTAATGAATTC  1107
      |||||||||||||
seq2  TCCTAATGAATTC  1101


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