BAC Information

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BAC

Clone NameB6Ng01-316O18
Chromosome9 (Build37)
Map Location 36,577,536 - 36,578,563
singlet/doubletsinglet
Overlap genenone
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
Downstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O18.bB6Ng01-316O18.g
ACCGA107197GA107198
length1,0431,158
definitionB6Ng01-316O18.b B6Ng01-316O18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
atatgtaatctgttggctgacttattcctaattttcccattctgagttga
tttgtaatacaattttgtgcacatcttttgtgcacatcttttgtgcatat
cttttgtaaatatcttcactgacaattacagattagctataattataact
agctagtctgctatcaaaaattcatcctgctctcttttgttttgtatttg
agaagagacaaggtctcactatggttctcactgacctagaactctccgtg
tagaccacatagcctacaactcatagaaatcttcctgtctctgctcctca
ccatgccaccatgtccgctctccttattaattaattaattgaatttaaga
tttatttatggtctggagagatggctcagatgttaatagtactgacttct
cttccagaggtcctaagttcaattcccagcaaccacatggtggctcacaa
ccatctgtaatgagattggatgccctcctctggtgtgtctgaagatagct
acagtgtactcatatacataaaataaataaatattttttttaaatttaat
tatttattttgtttgcttttatttcgagacagggtttctctgtatagccc
tggctgtcctggaactcctttgtagaccaggctggccttgaactcagaga
tccgccctgcctctgcctcccaagtgctgggattaaaggcgtaaaatatt
tatttattatgtataaattgttctgcctgcaggccagaagagggcatctg
accttattataggtggttgtgagccaccatgtgggaattgaactcaggac
atctggacgagcagacagatttagccatctctccagggatctctctctcc
cccaccccgtctcctttttgttaaaaggaatattactcctaaaaaacgac
gactttactttaatcacttagaatcctaaaaggtagtgtctttttagaaa
cagggttctattaaaaaaaaacagagccttcaataatcttcctatttttc
cccccctcaacggccctttttatttccatttttagggtgcatg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccagatgatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatatatgatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaagagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggccctagcaa
acacagaagtggatgctcacagtcagctaatggatgaatcatagggctcc
caatggagagctagagaaagtagccaaggagctaaagggatctacaccta
tagtgacacattatggactaaccagtacccgagctctgacttcttagctg
catatatatcaaaggattgcttagtcaggcatcactgaaagaaaagccaa
tgactgccactaaatgccagttacaggactcaaggccaaaaggggccatt
gggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36577536_36578563
seq2: B6Ng01-316O18.b_57_1099 (reverse)

seq1  CATGCACCCTAAAA--GGGAATAAAAAAGACCGTTGAGGGGGG--AAAAT  46
      ||||||||||||||  || |||||||| | |||||||||||||  |||||
seq2  CATGCACCCTAAAAATGGAAATAAAAAGGGCCGTTGAGGGGGGGAAAAAT  50

seq1  ATGAAGATTATTGAAAGCTCTG--TTTTTTTAATAGAA-CCTGTTTCT-A  92
      | ||||||||||||| ||||||  |||||||||||||| ||||||||| |
seq2  AGGAAGATTATTGAAGGCTCTGTTTTTTTTTAATAGAACCCTGTTTCTAA  100

seq1  AAAGACACTACC-TTTAGGATTCTAAGTGATTAAAGTAAAGTCGTCG-TT  140
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AAAGACACTACCTTTTAGGATTCTAAGTGATTAAAGTAAAGTCGTCGTTT  150

seq1  TTTAGGAGTAATATTCCTTTTAAC-AAAAGGAGACGGGGTGGGGGAGAGA  189
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTAGGAGTAATATTCCTTTTAACAAAAAGGAGACGGGGTGGGGGAGAGA  200

seq1  GAGAT-CCTGGAGAGATGGCT-AATCTGTCTGCTCGTCCAGATGTCCTGA  237
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGATCCCTGGAGAGATGGCTAAATCTGTCTGCTCGTCCAGATGTCCTGA  250

seq1  GTTCAATTCCCACATGGTGGCTCACAACCACCTATAATAAGGTCAGATGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCACATGGTGGCTCACAACCACCTATAATAAGGTCAGATGC  300

seq1  CCTCTTCTGGCCTGCAGGCAGAACAATTTATACATAATAAATAAATATTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGCCTGCAGGCAGAACAATTTATACATAATAAATAAATATTT  350

seq1  TACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA-GGCGGATCTCTGA  386
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGCGGATCTCTGA  400

seq1  GTTCAAGGCCAGCCTGGTCTACAAAGGAGTTCCAGGACAGCCAGGGCTAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTGGTCTACAAAGGAGTTCCAGGACAGCCAGGGCTAT  450

seq1  ACAGAGAAACCCTGTCTCGAAATAAAAGCAAACAAAATAAATAATTAAAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAATAAAAGCAAACAAAATAAATAATTAAAT  500

seq1  TTAAAAAAAATATTTATTTATTTTATGTATATGAGTACACTGTAGCTATC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATATTTATTTATTTTATGTATATGAGTACACTGTAGCTATC  550

seq1  TTCAGACACACCAGAGGAGGGCATCCAATCTCATTACAGATGGTTGTGAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAGGAGGGCATCCAATCTCATTACAGATGGTTGTGAG  600

seq1  CCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGAAGAGAAGTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGAAGAGAAGTC  650

seq1  AGTACTATTAACATCTGAGCCATCTCTCCAGACCATAAATAAATCTTAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATTAACATCTGAGCCATCTCTCCAGACCATAAATAAATCTTAAA  700

seq1  TTCAATTAATTAATTAATAAGGAGAGCGGACATGGTGGCATGGTGAGGAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATTAATTAATAAGGAGAGCGGACATGGTGGCATGGTGAGGAG  750

seq1  CAGAGACAGGAAGATTTCTATGAGTTGTAGGCTATGTGGTCTACACGGAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGAAGATTTCTATGAGTTGTAGGCTATGTGGTCTACACGGAG  800

seq1  AGTTCTAGGTCAGTGAGAACCATAGTGAGACCTTGTCTCTTCTCAAATAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGTCAGTGAGAACCATAGTGAGACCTTGTCTCTTCTCAAATAC  850

seq1  AAAACAAAAGAGAGCAGGATGAATTTTTGATAGCAGACTAGCTAGTTATA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGAGAGCAGGATGAATTTTTGATAGCAGACTAGCTAGTTATA  900

seq1  ATTATAGCTAATCTGTAATTGTCAGTGAAGATATTTACAAAAGATATGCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCTAATCTGTAATTGTCAGTGAAGATATTTACAAAAGATATGCA  950

seq1  CAAAAGATGTGCACAAAAGATGTGCACAAAATTGTATTACAAATCAACTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGTGCACAAAAGATGTGCACAAAATTGTATTACAAATCAACTC  1000

seq1  AGAATGGGAAAATTA-CAATAAGTCAGCCAACAGATTACATAT  1028
      |||||||||||||||  ||||||||||||||||||||||||||
seq2  AGAATGGGAAAATTAGGAATAAGTCAGCCAACAGATTACATAT  1043