BAC Information

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BAC

Clone NameB6Ng01-316P09
Chromosome9 (Build37)
Map Location 80,814,433 - 80,815,507
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316P09.bB6Ng01-316P09.g
ACCGA107226GA107227
length1,1761,065
definitionB6Ng01-316P09.b B6Ng01-316P09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagtattgagcaggctggacattaagttcggtcatgtagcag
tttcctcttaggttaaaaaattacaccctaagccaagatataaatggaaa
gtgaaacaacacaatattttagaactggatatttagaaggaggtgaaaca
ctctacagagaatcaccactcagacagccagacacatacaagcaactcaa
aatagcttcagaaaatacctgaagctgaccagaatcactagaccctcctc
atcactatatatgtccaagagatagagacacttgcatccatgctacaatg
aagaagcatagaccagccaatcatcctgaaagaagcagagaccagaaaaa
cagccttaaaaagtaacagatagtagactaactgcctagaaaaaaacaaa
gatccgagaggctgcctgaagaagctcaaaccaacccaggtacctggaaa
ggacattctaaaaccagttcagctgcctccagaatgatatgtaacacagg
ttcccaggttttgtgaattgtcatccatgttggctaggctttggtgaatc
acctgtctgaatcatttctgcatgttcctgcaagtgacctaaataaaact
cattggtccactaatctggactttgatgtattcatactttaatttttcat
gggctctctacttgcagttagtaggggactacgtgtgtgtatctcccttg
gaaaagtttttcatacaataatatcaattagacagttatggttgccctaa
ggtataagtgtcattgctgcaactttgaaatatcttacaaggatgataat
tgttatggttcacaggcttaatagcttactagggccaatgattactcctc
tcccttggcagaaggcttgcacagaacctttccatattatgaaagctagc
tttttaaggagacaagcagatccaagagattcttggcagatatctagtgt
ctagtgtctaaggaatgacacttgaaactgactgtactacttacctatac
acacacacacacacacacactcacacactacactcacacactctgaagag
agagaagagagagtagagagtgagaagatagtagatgagagagagagtac
ggactgagaccgagacgaaggactgaacgatggagcatctcattttctcc
cctcgatattttgttgagtccaagac

gaattccatattagaaagaagtaggttgatcctttaaacttatattagct
ataacattaaaatgatgacatgtttcttaaaatatgaactaaatggcttc
atgcagttagttctcaagctggtggctttatttcctcactgtcgtataca
ttagaattgacgaatctaggcaagatgttccgttcagccaccccaggccc
attattttgatgttaggaaggtttttctttttgggtggttttgaattagc
aattatataaccaaggataatgattgctgtttaatcttaggggccatcat
tatgaaattaacaatctgtttcactgcttcgctgttgaacactctgcttc
acttcctgagggagaaaataaaaatcacagtatgtccagtacttcttgtc
ttccacattccattttcgtttttcatggcaaagaataagtgcattggctt
aacttgactcaattttgacttctggcaattaaacattaattactgaatgt
tctttagtatgctttcattatgtctgatgttcctcatgggactctggaag
cttggatttggatcatgtgacttgtgtaggacacaggaaaataacactag
gtagacacattgttgctgcccaggatatttctttggactttattttactg
agtaaatttgggctctagatttttctttgccaaagaatgatgaaaacaag
ttaattaagtatataagtaaagctaaagtattttaaatatttacattggt
cccgtatgcaacaatgactgttctttctgatgccaaaacagaaataccaa
tcatttcaaaattagatcacattatcttgcctagtcctacacaataccac
gaatgtacccaaaatgcatattctcttaccctaaagttcatagcttaata
ttaactcaaaataattatccagaagtgtttccagaatggtgagggtacca
tgtgatgaaatattttatttagtagaaggtagaggatcagatttcacaaa
tgggattctcatttggattaggatagacacctctaggaagatcttctcag
cttctagtgcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80814433_80815507
seq2: B6Ng01-316P09.g_71_1135

seq1  GAATTCCATATTAGAAAGAAGTAGGTTGATCCTTTAAACTTATATTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTAGAAAGAAGTAGGTTGATCCTTTAAACTTATATTAGCT  50

seq1  ATAACATTAAAATGATGACATGTTTCTTAAAATATGAACTAAATGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAAAATGATGACATGTTTCTTAAAATATGAACTAAATGGCTTC  100

seq1  ATGCAGTTAGTTCTCAAGCTGGTGGCTTTATTTCCTCACTGTCGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTAGTTCTCAAGCTGGTGGCTTTATTTCCTCACTGTCGTATACA  150

seq1  TTAGAATTGACGAATCTAGGCAAGATGTTCCGTTCAGCCACCCCAGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTGACGAATCTAGGCAAGATGTTCCGTTCAGCCACCCCAGGCCC  200

seq1  ATTATTTTGATGTTAGGAAGGTTTTTCTTTTTGGGTGGTTTTGAATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGATGTTAGGAAGGTTTTTCTTTTTGGGTGGTTTTGAATTAGC  250

seq1  AATTATATAACCAAGGATAATGATTGCTGTTTAATCTTAGGGGCCATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAACCAAGGATAATGATTGCTGTTTAATCTTAGGGGCCATCAT  300

seq1  TATGAAATTAACAATCTGTTTCACTGCTTCGCTGTTGAACACTCTGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTAACAATCTGTTTCACTGCTTCGCTGTTGAACACTCTGCTTC  350

seq1  ACTTCCTGAGGGAGAAAATAAAAATCACAGTATGTCCAGTACTTCTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGAGGGAGAAAATAAAAATCACAGTATGTCCAGTACTTCTTGTC  400

seq1  TTCCACATTCCATTTTCGTTTTTCATGGCAAAGAATAAGTGCATTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTCCATTTTCGTTTTTCATGGCAAAGAATAAGTGCATTGGCTT  450

seq1  AACTTGACTCAATTTTGACTTCTGGCAATTAAACATTAATTACTGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACTCAATTTTGACTTCTGGCAATTAAACATTAATTACTGAATGT  500

seq1  TCTTTAGTATGCTTTCATTATGTCTGATGTTCCTCATGGGACTCTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTATGCTTTCATTATGTCTGATGTTCCTCATGGGACTCTGGAAG  550

seq1  CTTGGATTTGGATCATGTGACTTGTGTAGGACACAGGAAAATAACACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTGGATCATGTGACTTGTGTAGGACACAGGAAAATAACACTAG  600

seq1  GTAGACACATTGTTGCTGCCCAGGATATTTCTTTGGACTTTATTTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACATTGTTGCTGCCCAGGATATTTCTTTGGACTTTATTTTACTG  650

seq1  AGTAAATTTGGGCTCTAGATTTTTCTTTGCCAAAGAATGATGAAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTGGGCTCTAGATTTTTCTTTGCCAAAGAATGATGAAAACAAG  700

seq1  TTAATTAAGTATATAAGTAAAGCTAAAGTATTTTAAATATTTACATTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGTATATAAGTAAAGCTAAAGTATTTTAAATATTTACATTGGT  750

seq1  CCCGTATGCAACAATGACTGTTCTTTCTGATGCCAAAACAGAAATACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATGCAACAATGACTGTTCTTTCTGATGCCAAAACAGAAATACCAA  800

seq1  TCATTTCAAAATTAGATCACATTATCTTGCCTAGTCCTACACAATACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAAATTAGATCACATTATCTTGCCTAGTCCTACACAATACCAC  850

seq1  GAATGTACCCAAAATGCATATTCTCTTACCCTAAAGTTCATAGCTTAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTACCCAAAATGCATATTCTCTTACCCTAAAGTTCATAGCTTAATA  900

seq1  TTAACTCAAAATAATTATCCAGAAGTGTTTCCAGAATGGTGAGGGTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCAAAATAATTATCCAGAAGTGTTTCCAGAATGGTGAGGGTACCA  950

seq1  TGTGATGAAAATATTTTATTTTAGTAGAAGGTAGAGGATCAGATTTCACC  1000
      ||||||| |||||||||| |||||||||||||||||||||||||||||| 
seq2  TGTGATG-AAATATTTTA-TTTAGTAGAAGGTAGAGGATCAGATTTCAC-  997

seq1  AAAATGGAATTCTCATTTTGGAATTTAGGATAGACACCTCTAAGGGAGGA  1050
       |||||| ||||||| ||||||  ||||||||||||||||||  ||| ||
seq2  -AAATGGGATTCTCA-TTTGGA--TTAGGATAGACACCTCTA--GGAAGA  1041

seq1  TCTTCTCAGCTTCTAGTGAAATATA  1075
      ||||||||||||||||||  |||||
seq2  TCTTCTCAGCTTCTAGTG-CATATA  1065


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