BAC Information

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BAC

Clone NameB6Ng01-317A13
Chromosome9 (Build37)
Map Location 4,120,857 - 4,121,930
singlet/doubletsinglet
Overlap genenone
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236
Downstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317A13.bB6Ng01-317A13.g
ACCGA107278GA107279
length7631,195
definitionB6Ng01-317A13.b B6Ng01-317A13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagaaatgcaatgaatatcatttgaatctattttttccttt
agaatcctttaaatcaaccgtactaaacactggtaattggacataaaatg
accatttctctcaaggtattttgttagttgcttttcccctgtaattttga
gaacctatattgtgattattccaatgtttcctttcttgaattgcattata
caaatgacaggagatatttttatggtgttttattctatcaagagaaataa
gctttgtaagttttcattaaaataaatgatttccagagaaaaacataagt
gaatttaaaaattatgatttctctgtatcaaatgatctagtataaagcat
aaaacaattatctagaatattttataataatattactaaaaatttatttt
actggggtatattacatttgtgagagatgaatatataattacagtttaat
aattaatttaaagatgtttttctagtgtaagggactacagttgcaatttt
agaagacagaaaatacatgcaatacatatttcctagttctgtttgtctaa
gcacattaagacgccattcgtattccatgaagcaaatctctctctctctc
tctctctctctctctctctctctctctctctctctctctcacttttcccc
cttctttgtttgtgtgtttttataaccttctattttattgcacttacgta
ttgtctgcatttacatttccatatctatccccaaatcccccccataccct
ctcccactctcat

gaattccaagctcaatgccggcttcaaggattttctaggaaccattggaa
cactggtggaggcttagctatgtcaaaaatcaatccttaaaggcacttat
aatgaaacaatactgaaagagagcatacaacagattattgcagggacagg
gtttgagtatacaggatatggaaatgtcaaggttccaggaggcaaagctt
ccttgaaactcttcacctcgtgcctggtttcaggcctttaggcctacaaa
gcagactacactggagtggacgtagcatgtgagcaccagaggaatttatt
ttctggtccaatctatttggagttctgtaggattcttgtatgttcatggg
catgactttctttaggttagggaagttttcttctataatttcattgcaga
tatttactatccctttaagttgggaatcttcactctcttctatacctatt
atccttaggtttggtcttcttattgtgccctggatttcctgtatgttttg
tgttatcagccttttgcattttgcatattctttcactgttgtgtcaatgt
tttctatggtatcttccgcacctgagcttctctcttctatctcttctatt
ctgttggtgatgctcgcatctatgactcctgatctctttcctaggtcttc
tatctccagtgctctcaccctttatgatttctttattgtctctgtttcca
tttttagatcctggatgcttttcttcagttccttcacctgtttgattatg
ttgtcctgtaattctttaagggattttttgtttcctctttaaggtcttct
accagtttgcttgtgttctcttgtatttcatcctacttaatgtcctctat
catcacaatgagatgcgatttttcatcagtcttgcttttctggtgttttt
ggggtaaccaggcctcattgtggtgagaaaactcgtttctgatgatgcca
agtaggcttggtttctgtggctatgttcttgtgcttgccttttgccatct
gggatatctcagtgtagctaaccttccttgctgtctcctgactgtgcctt
ctcttgtctgcaatctgtgtgtctgtactttctggagacaagttctctca
ggagggaataaggtatggaaagctgtcgtatagggtaatcttggtcaaag
acaatgattcggtttcaattgaatccttggtactgcgtggctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4120857_4121930
seq2: B6Ng01-317A13.b_46_808 (reverse)

seq1  ATGAGAGTGGGTGGGTTAGTGAGCAGGGTGAGGGGGGATACGATGGGGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGGAGGGGAAATGAGGAAAGGGGACAAAATTTGAAGTGAAAATAAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAACTAATAAAAAATAAAGTAAAACAAAAATAAGTAGAGAATTAAATCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTGCACATGTTCCAAATGCTAGTGCTTTTGTAAAAGAAACATGATAGC  200
                                                |||| || 
seq2  ------------------------------------------ATGAGAG-  7

seq1  ATTAAAAATTCTGCCTTGGCAGATGATAAACTGGATTGTTTTTTGGTAGG  250
                      ||| ||| | ||   |||   |  ||| |   ||
seq2  ----------------TGGGAGAGGGTA---TGGGGGGGATTTGG---GG  35

seq1  AAACATCCTTTCATAATCCTTAAAT-CAAATGATCAAAAAATAATCGGAA  299
      | | ||         ||    ||||  |||||  || | ||||  || ||
seq2  ATAGAT---------AT--GGAAATGTAAATG--CAGACAATA--CGTAA  70

seq1  ACATTTTTTTAAAAGACCAAATGATAAGGATTTTAATTAATTAAGAATAC  349
               |  || |  |||| | ||||       |||  ||| || ||
seq2  --------GTGCAATA--AAAT-AGAAGG-------TTA--TAAAAACAC  100

seq1  ACATTTGGTTTGTAAATGAAGATAATAGATAAGTAAAAATAACATGTAGG  399
      ||           |||  ||||     || ||||                
seq2  AC-----------AAACAAAGAAGGGGGAAAAGT----------------  123

seq1  ATGTGGGTGTGGGTGAGTGTGTGTGTGTGTGTGGGGAGAGAGAGAGAGAG  449
                                         |||||||||||||||
seq2  -----------------------------------GAGAGAGAGAGAGAG  138

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGCTTCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGCTTCATG  188

seq1  GAATACGAATGGCGTCTTAATGTGCTTAGACAAACAGAACTAGGAAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACGAATGGCGTCTTAATGTGCTTAGACAAACAGAACTAGGAAATAT  238

seq1  GTATTGCATGTATTTTCTGTCTTCTAAAATTGCAACTGTAGTCCCTTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCATGTATTTTCTGTCTTCTAAAATTGCAACTGTAGTCCCTTACA  288

seq1  CTAGAAAAACATCTTTAAATTAATTATTAAACTGTAATTATATATTCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAACATCTTTAAATTAATTATTAAACTGTAATTATATATTCATC  338

seq1  TCTCACAAATGTAATATACCCCAGTAAAATAAATTTTTAGTAATATTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATGTAATATACCCCAGTAAAATAAATTTTTAGTAATATTATT  388

seq1  ATAAAATATTCTAGATAATTGTTTTATGCTTTATACTAGATCATTTGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTCTAGATAATTGTTTTATGCTTTATACTAGATCATTTGATA  438

seq1  CAGAGAAATCATAATTTTTAAATTCACTTATGTTTTTCTCTGGAAATCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATCATAATTTTTAAATTCACTTATGTTTTTCTCTGGAAATCAT  488

seq1  TTATTTTAATGAAAACTTACAAAGCTTATTTCTCTTGATAGAATAAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAATGAAAACTTACAAAGCTTATTTCTCTTGATAGAATAAAACA  538

seq1  CCATAAAAATATCTCCTGTCATTTGTATAATGCAATTCAAGAAAGGAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAATATCTCCTGTCATTTGTATAATGCAATTCAAGAAAGGAAAC  588

seq1  ATTGGAATAATCACAATATAGGTTCTCAAAATTACAGGGGAAAAGCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATAATCACAATATAGGTTCTCAAAATTACAGGGGAAAAGCAACT  638

seq1  AACAAAATACCTTGAGAGAAATGGTCATTTTATGTCCAATTACCAGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATACCTTGAGAGAAATGGTCATTTTATGTCCAATTACCAGTGTT  688

seq1  TAGTACGGTTGATTTAAAGGATTCTAAAGGAAAAAATAGATTCAAATGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGGTTGATTTAAAGGATTCTAAAGGAAAAAATAGATTCAAATGAT  738

seq1  ATTCATTGCATTTCTTACTGAATTC  1074
      |||||||||||||||||||||||||
seq2  ATTCATTGCATTTCTTACTGAATTC  763


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