BAC Information

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BAC

Clone NameB6Ng01-317G23
Chromosome9 (Build37)
Map Location 82,408,552 - 82,409,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317G23.bB6Ng01-317G23.g
ACCGA107579GA107580
length9871,062
definitionB6Ng01-317G23.b B6Ng01-317G23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatgtctgagaagcacctgaaaaaaat
gttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccaatcagaatggctaagatcaaaaattcaggtgacag
cagatgctgtcgaggatgtggagaaagaggaacactcctccattgttggt
gggatttcaagcttgtacaaccactctggaaatcagtctggtggttcctc
agaaaattgtacatagtactatcggaggatccagcaatacctctcctggg
catatatccagaagatgtctcaaccagtaagaaggacacatgctccacta
tgttcatagcagcgttatttataatagccagaagctggaaagaacccaga
tgcccctcatcagaggaatggatacagaaaatgtggtactttttcacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagagcatcatcctgagtgaggtaacccaatcacaa
aagaactcataggatatgtactcactgataagtggatattagctcagaaa
cttagaatacccaagatacaagatacaatttgcaaaacacatgaaactca
agaataacaagaccaaagtgtagacactttccccttctcagaattgggaa
caaaacacccatttaaggagttacagagataaagtttgcagctgagatga
aaggatggaccatctagagactgtcatatctagggatccatcccacaatc
agcctccaaacactgacaccattgcatataccagcaagatttttctgaaa
ggaccctgatatagctatctcttgtgaggctatgccagggcctggcaaac
acaaaagtggatgctcacagtcagctattggatggaacacagggccccca
atggaggagctagagaaagtaaccaagagctaaaggg
gaattctctaacaacacagaagtatgcacacaagtctttatctgctgcat
tgatagagatttccgcttacttttgtcttttgttgaaaaacaattcacta
tcttttggagacagtgttaggaatgtgggttgatttttatgaaacagaat
tttttaaaaaatatattttatttttaatttattttttacactccatatta
cattcccaccccacccccatccactttctgtctgctccacatcccatact
tcctccccaccccaccccatctctacgtggatgtccccaatagagatttt
taaatttagccttcaaagattctttccacagtcatgatccagatcccctt
aaagaacattaaaatagcttgtggaaactcttaataaaataaaactgtat
ttctcaaatgttgcactcttggactcccttccttatgtctcgtcctggct
gttagatttgtaaatatttgaattgttccatgactcatggaagtcaagtt
ttaaacaatgtatgactctactagagtttttattcctgaggtggttggta
attcaagtatgttttctctagtcttccattgttattaaaattaatggcac
ttatcaagagtgacatattataaatgcacagtcagataccaatgaaagag
actaataagagttaattataactggaaatcaatctcttaacataaattaa
taagctgtaagaaattgatttctcatttcttttgctacttcattaaacac
attaatgccttaaatgaaaagctattccatgttccttaatatcttgttga
gtcatttgtcaagacaggtcatataaaaatcccttggaatcttcaccagt
cttattgtaatggatttctggatagactcacagaaggaaaaaaaaatcaa
catttaaacagtatttgaacactggattaataatttaatgcctttcgtgt
aacagaaagctcagtcatgtctggtgattttttttccctgtttttattga
tgtgtatcggggcagctgtgagtacctgagagctggtagtaggaaaatga
gattaatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82408552_82409623
seq2: B6Ng01-317G23.g_64_1125 (reverse)

seq1  AAGAA--TAATCTCATTTCCCCTACTTACAAGCTCTCAGGGTACTTCACA  48
      |||||  |||||||||||  ||||| ||| |||||||| ||||| |||||
seq2  AAGAAATTAATCTCATTT-TCCTAC-TACCAGCTCTCA-GGTAC-TCACA  46

seq1  GCTGCCCCGAATACCACCATCAATAAAAACAAGGGGAAAAAAAATCAACC  98
      ||||||||| ||||   ||||||||||||||  ||||||||||||| |||
seq2  GCTGCCCCG-ATAC--ACATCAATAAAAACA--GGGAAAAAAAATC-ACC  90

seq1  AGACATGACCTGAGCTTTCTGTTACACGAAAGGCATTAAATTATTAATCC  148
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGA-CTGAGCTTTCTGTTACACGAAAGGCATTAAATTATTAATCC  139

seq1  AGTGTTCAAATACTGTTTTAAATGTTGATTTTTTTTTCCTTCTGTGAGTC  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAATACTG-TTTAAATGTTGATTTTTTTTTCCTTCTGTGAGTC  188

seq1  TATCCAGAAATCCATTACAATAAGACTGGTGAAGATTCCAAGGGATTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAAATCCATTACAATAAGACTGGTGAAGATTCCAAGGGATTTTT  238

seq1  ATATGACCTGTCTTGACAAATGACTCAACAAGATATTAAGGAACATGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCTGTCTTGACAAATGACTCAACAAGATATTAAGGAACATGGAA  288

seq1  TAGCTTTTCATTTAAGGCATTAATGTGTTTAATGAAGTAGCAAAAGAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTCATTTAAGGCATTAATGTGTTTAATGAAGTAGCAAAAGAAAT  338

seq1  GAGAAATCAATTTCTTACAGCTTATTAATTTATGTTAAGAGATTGATTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCAATTTCTTACAGCTTATTAATTTATGTTAAGAGATTGATTTC  388

seq1  CAGTTATAATTAACTCTTATTAGTCTCTTTCATTGGTATCTGACTGTGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATAATTAACTCTTATTAGTCTCTTTCATTGGTATCTGACTGTGCA  438

seq1  TTTATAATATGTCACTCTTGATAAGTGCCATTAATTTTAATAACAATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATGTCACTCTTGATAAGTGCCATTAATTTTAATAACAATGGA  488

seq1  AGACTAGAGAAAACATACTTGAATTACCAACCACCTCAGGAATAAAAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAGAAAACATACTTGAATTACCAACCACCTCAGGAATAAAAACT  538

seq1  CTAGTAGAGTCATACATTGTTTAAAACTTGACTTCCATGAGTCATGGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGAGTCATACATTGTTTAAAACTTGACTTCCATGAGTCATGGAAC  588

seq1  AATTCAAATATTTACAAATCTAACAGCCAGGACGAGACATAAGGAAGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATATTTACAAATCTAACAGCCAGGACGAGACATAAGGAAGGGA  638

seq1  GTCCAAGAGTGCAACATTTGAGAAATACAGTTTTATTTTATTAAGAGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGAGTGCAACATTTGAGAAATACAGTTTTATTTTATTAAGAGTTT  688

seq1  CCACAAGCTATTTTAATGTTCTTTAAGGGGATCTGGATCATGACTGTGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCTATTTTAATGTTCTTTAAGGGGATCTGGATCATGACTGTGGA  738

seq1  AAGAATCTTTGAAGGCTAAATTTAAAAATCTCTATTGGGGACATCCACGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTTGAAGGCTAAATTTAAAAATCTCTATTGGGGACATCCACGT  788

seq1  AGAGATGGGGTGGGGTGGGGAGGAAGTATGGGATGTGGAGCAGACAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGGTGGGGTGGGGAGGAAGTATGGGATGTGGAGCAGACAGAAA  838

seq1  GTGGATGGGGGTGGGGTGGGAATGTAATATGGAGTGTAAAAAATAAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGGGGTGGGGTGGGAATGTAATATGGAGTGTAAAAAATAAATTA  888

seq1  AAAATAAAATATATTTTTTAAAAAATTCTGTTTCATAAAAATCAACCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATATATTTTTTAAAAAATTCTGTTTCATAAAAATCAACCCAC  938

seq1  ATTCCTAACACTGTCTCCAAAAGATAGTGAATTGTTTTTCAACAAAAGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACACTGTCTCCAAAAGATAGTGAATTGTTTTTCAACAAAAGAC  988

seq1  AAAAGTAAGCGGAAATCTCTATCAATGCAGCAGATAAAGACTTGTGTGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGCGGAAATCTCTATCAATGCAGCAGATAAAGACTTGTGTGCA  1038

seq1  TACTTCTGTGTTGTTAGAGAATTC  1072
      ||||||||||||||||||||||||
seq2  TACTTCTGTGTTGTTAGAGAATTC  1062