BAC Information

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BAC

Clone NameB6Ng01-317H07
Chromosome9 (Build37)
Map Location 90,539,958 - 90,691,974
singlet/doubletdoublet
Overlap geneLOC100039925
Upstream geneTmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H07.bB6Ng01-317H07.g
ACCGA107595GA107596
length6491,089
definitionB6Ng01-317H07.b B6Ng01-317H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,539,958 - 90,540,606)(90,690,881 - 90,691,974)
sequence
gaattcctagagataaaaaaaaaatgccttcactaaagtggctgcctata
aaatcaaatcatcccctcccccacaaaaaaagccaaacaacaacatctac
aaaaacaaaaacaaaaaacaaaaaaaacaaccactccccccaaaagaaac
aaacaaaaaacccaacagctccattgtatataaacaataaaaagaaatca
tggaaacaacacccttcacaatagccacaaataatataaaatatcttggt
ataactctgaacaaaaaagtggaagacctgtaggggaagaacttcaagga
tttgaagaaactgaagatatcaaaagttaggaagttgtctcatgctcatg
gattaataggattaatatagtaaaaaatgactatcaaaagcaatctacag
atacaatataattcccatcaaaattccaacacaattctttacagaccttg
aatgaacaatattcagatccataggaaaaaacaaacaaaacaaaacaaaa
caaagtaataaacaaacaaaaatccaggattgctaaacaatcttgtacaa
taaaataacgtctgcaggtatcaccatccctgatttcaagctatactacc
aagccctactaatataaacttcataggattggcataaaaacagacaggt
gaattccaaacaatctaggtagagtttatatatcagtgtccaaatagatg
agtctacctaaagggaaaatcaagcccctaagaaattgttaaaatatttc
tatcttttattttcagatacatcaacgttgaaactatccccatctctaac
ttaattattaaacatgagtaaaacacctttctcatgctgttcagtcacca
tcactatgccaatggcttccactttagatattttaattgcttctcctctc
ttaatgtaagaagattaataaacagataaactaccattggcaaacagtac
ttcaggtgttctcttcctccttggaggcccccctttactgtttgatactt
gtctctaaggtagttccttggtttccttaagatcctctcttgcttaaact
tccctttaaccaattcatcacctcaataacactaaaagatgactgaatag
attaaatagattatttttaatgattaaaaagaagtcctaggaattttacg
actgaggaagatggagggtgagtgagttctgtgtgggaggaaataagaca
gagatttcttgtccttcatttggacattgatacttaggacatatcaggat
ggaaatcaaggtctgtcccagatgactgccgctgagaccagcattaaaaa
cagaatttggatttggtcacactaacaagagttacttaggtagcatgata
cagagagaggagatgaaataaaagttgggaataaaaactaaaattaggag
aatatgcctcccaaggaatagtggatttgtaagacaggataaaggagctg
tggatactgtagaaagaggccaaggctggttattgttttcaaattggctt
gactgttgtgttgttaaatacttcaaagaatctgctttgactatacaaca
agaaaggagaaagtcaacagaatatcattccaggcaaagaagtgataaat
agaagtttaggaaagagagagatttagttctaattcttcagaacttgtga
agagcagaggagaaggttaactggtgttttgaagaacttgaagaatttta
aatgcatttattacttttgtggtctgaatttttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90539958_90540606
seq2: B6Ng01-317H07.b_43_691

seq1  GAATTCCTAGAGATAAAAAAAAAATGCCTTCACTAAAGTGGCTGCATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATTCCTAGAGATAAAAAAAAAATGCCTTCACTAAAGTGGCTGCCTATA  50

seq1  AAATCAAATCATCCCCTCCCCCACAAAAAAAGCCAAACAACAACATCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATCAAATCATCCCCTCCCCCACAAAAAAAGCCAAACAACAACATCTAC  100

seq1  AAAAACAAAAACAAAAAACAAAAAAAACAACCACTCCCCCCAAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAAAAACAAAAAAAACAACCACTCCCCCCAAAAGAAAC  150

seq1  AAACAAAAAACCCAACAGCTCCATTGTATATAAACAATAAAAAGAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCCAACAGCTCCATTGTATATAAACAATAAAAAGAAATCA  200

seq1  TGGAAACAACACCCTTCACAATAGCCACAAATAATATAAAATATCTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAACACCCTTCACAATAGCCACAAATAATATAAAATATCTTGGT  250

seq1  ATAACTCTAAACAAAAAAGTGGAAGACCTGTAGGGCAAGAACTTCAAGTA  300
      |||||||| |||||||||||||||||||||||||| |||||||||||| |
seq2  ATAACTCTGAACAAAAAAGTGGAAGACCTGTAGGGGAAGAACTTCAAGGA  300

seq1  TTTGAAGAAACTGAAGATATCAGAAGTTAGGAAGTTGTCTCATGCTCATG  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGAAGAAACTGAAGATATCAAAAGTTAGGAAGTTGTCTCATGCTCATG  350

seq1  GATTAATAGGATTAATATAGTAAAAAATGACTATCAAAAGCAATCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATAGGATTAATATAGTAAAAAATGACTATCAAAAGCAATCTACAG  400

seq1  ATACAATATAATTCCCATCAAAATTCCAACACAATTCTTTACAGACCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATAATTCCCATCAAAATTCCAACACAATTCTTTACAGACCTTG  450

seq1  AATGAACAATATTCAGATCCATAGGAAAAAACAAACAAAACAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAATATTCAGATCCATAGGAAAAAACAAACAAAACAAAACAAAA  500

seq1  CAAAGTAATAAACAAACAAAAATCCAGGATTGCTAAACAATCTTGTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAATAAACAAACAAAAATCCAGGATTGCTAAACAATCTTGTACAA  550

seq1  TAAAATAACGTCTGCAGGTATCACCATCCCTGATTTCAAGCTATACTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACGTCTGCAGGTATCACCATCCCTGATTTCAAGCTATACTACC  600

seq1  AAGCCCTACTAATATAAACTTCATAGGATTGGCATAAAAACAGACAGGT  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTACTAATATAAACTTCATAGGATTGGCATAAAAACAGACAGGT  649

seq1: chr9_90690881_90691974
seq2: B6Ng01-317H07.g_64_1152 (reverse)

seq1  TTTTAAAAAAA-TCAGAACAC-AAAGTAATTAAAATGACATTTTAAAATT  48
      ||||||||||| ||||| ||| ||||||||  ||||| || |||||||||
seq2  TTTTAAAAAAATTCAGACCACAAAAGTAAT--AAATG-CA-TTTAAAATT  46

seq1  TCTCAAG-TCTTCAAAACACCAGTTTACCCTCCTCCTCTGCTCTCCACAA  97
        ||||| ||||||||||||||| ||| ||| |||||||||||| |||||
seq2  CTTCAAGTTCTTCAAAACACCAG-TTAACCTTCTCCTCTGCTCTTCACAA  95

seq1  GTCCTGAAGAATTAGGACTAAATTCTCTTCTCTTTCCTAAACTTCTATTT  147
      || |||||||||||| |||||| |||| ||||||||||||||||||||||
seq2  GTTCTGAAGAATTAGAACTAAA-TCTC-TCTCTTTCCTAAACTTCTATTT  143

seq1  ATCACTTCTTTGCCTTGGAATGATATTCTGTTGACTTTCTCTTTTCTTGT  197
      |||||||||||||| |||||||||||||||||||||||||| ||||||| 
seq2  ATCACTTCTTTGCC-TGGAATGATATTCTGTTGACTTTCTCCTTTCTTG-  191

seq1  TTGTATAGTCAAAGCAGATTCTTTGAAGTATTTAACAACACAACAGTCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGTCAAAGCAGATTCTTTGAAGTATTTAACAACACAACAGTCAA  241

seq1  GCCAATTTGAAAACAATAACCAGCCTTGGCCTCTTTCTACAGTATCCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTGAAAACAATAACCAGCCTTGGCCTCTTTCTACAGTATCCACA  291

seq1  GCTCCTTTATCCTGTCTTACAAATCCACTATTCCTTGGGAGGCATATTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTATCCTGTCTTACAAATCCACTATTCCTTGGGAGGCATATTCT  341

seq1  CCTAATTTTAGTTTTTATTCCCAACTTTTATTTCATCTCCTCTCTCTGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTAGTTTTTATTCCCAACTTTTATTTCATCTCCTCTCTCTGTA  391

seq1  TCATGCTACCTAAGTAACTCTTGTTAGTGTGACCAAATCCAAATTCTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTACCTAAGTAACTCTTGTTAGTGTGACCAAATCCAAATTCTGTT  441

seq1  TTTAATGCTGGTCTCAGTGGCAGTCATCTGGGACAGA-CTTGATTTCCAT  496
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTTAATGCTGGTCTCAGCGGCAGTCATCTGGGACAGACCTTGATTTCCAT  491

seq1  CCTGAAATGTCCTAAGTATCAATGTCCAAATGAAGGACAAGAAATCTCTG  546
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATGTCCTAAGTATCAATGTCCAAATGAAGGACAAGAAATCTCTG  541

seq1  TCTTATTTCCTCCCACATAGAACTCACTCACCCTCCATCTTCCTCAGTTG  596
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TCTTATTTCCTCCCACACAGAACTCACTCACCCTCCATCTTCCTCAGTCG  591

seq1  TAAAATTCCTAGGACTTCTTTTTAATCATTAAAAATAATCTATTTAATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCTAGGACTTCTTTTTAATCATTAAAAATAATCTATTTAATCT  641

seq1  ATTCAGTCATCTTTTAGTGTTATTGAGGTGATGAATTGGTTAAAGGGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCATCTTTTAGTGTTATTGAGGTGATGAATTGGTTAAAGGGAAG  691

seq1  TTTAAGCAAGAGAGGATCTTAACGAAACCAAGGAACTACCTTAGAGACAA  746
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAAGCAAGAGAGGATCTTAAGGAAACCAAGGAACTACCTTAGAGACAA  741

seq1  GTATCAAACAGTAAAGGGGGGCCTCCAAGGAGGAAGAGAACACCTGAAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAACAGTAAAGGGGGGCCTCCAAGGAGGAAGAGAACACCTGAAGT  791

seq1  ACTGTTTGCCAATGGTAGTTTATCTGTTTATTAATCTTCTTACATTAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCCAATGGTAGTTTATCTGTTTATTAATCTTCTTACATTAAGA  841

seq1  GAGGAGAAGCAATTAAAATATCTAAAGTGGAAGCCATTGGCATAGTGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGCAATTAAAATATCTAAAGTGGAAGCCATTGGCATAGTGATG  891

seq1  GTGACTGAACAGCATGAGAAAGGTGTTTTACTCATGTTTAATAATTAACT  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGACTGAACAGCATGAGAAAGGTGTTTTACTCATGTTTAATAATTAAGT  941

seq1  TAGAGATGGGGATAGTTTCAATGTTGATGTATCTGAAAATAAAAGATAGA  996
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGAGATGGGGATAGTTTCAACGTTGATGTATCTGAAAATAAAAGATAGA  991

seq1  AATATTTTAACAATTTCTTAGGGGCTTGATTTTCCCTTTAGGTAGACTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAACAATTTCTTAGGGGCTTGATTTTCCCTTTAGGTAGACTCA  1041

seq1  TCTATTTTTACATTGATATATAAACTCTACCTAGATTGTTTTGAATTC  1094
      |||||||  ||| |||||||||||||||||||||||||||| ||||||
seq2  TCTATTTGGACACTGATATATAAACTCTACCTAGATTGTTTGGAATTC  1089