BAC Information

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BAC

Clone NameB6Ng01-317M16
Chromosome9 (Build37)
Map Location 54,377,549 - 54,378,736
singlet/doubletsinglet
Overlap genenone
Upstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
Downstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M16.bB6Ng01-317M16.g
ACCGA107849GA107850
length4321,165
definitionB6Ng01-317M16.b B6Ng01-317M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atcccatactcagctcaacacatgctcttgagaagcaggaagagagaagc
tggcgtctgagcagttgcagccgcaagggctccaggactttcacatcttt
gccaacacacctccccttttgttacagcaagcctggcaggtgtaagctgt
tatttcgtgtggctttgaattgtgtgtcccaatggctgatgttaagtaac
ctttaaagattttgtcaatgtttatacttcttcagagagaagtcttttca
attctcctttgtttattgttgattctgtttattattgagtggcaaaggtt
agtttttgttggtattggtttggtttggtttggtttggcttctgtctgta
gccctggctgtccaggaattcactatgtagaccaggctggctttgaactc
acactgatctgcctgtctcttcctcctaagtg
gaattctgagccactgagcctgactccagagactgctgccccacatatgc
tccatccttacatatttgggtcccaggggagaataggaggtggtctactc
cacaatattctctctatctagagcccaccatcctgtaagtgaacatgtag
tgaactgaatgatgggatgcaggcttctttctaaacaatcttttcctacc
cataatcctttacatagcacccctagctctctccaaacctgggctttgcc
cctcctcagtcccatatttcctttgagtataaatacagagctctccttat
ttgcttaactctcagaattgtcacccctggtccacaaccatctgggctac
atccctttttgtacaaaaaaagcctttgtcttcttatgaaaatgatgggg
tcccgcccataactgtacccagcattaacggtggtggagtgagacttgcc
tcatggaaaaagagagcagcatatttctttgcatttgaatacttccagga
ccttgccttggcagcaaaccagttctggattggcccccaggatgctcact
ctgtatggtgccatgggtctctggaaaatctactgagtcttgtgtgcctc
ttggatattttttaagtgcacaaaattggactcatagaggaacagtggaa
ttaaattatgtggaaatagggtcacaggaaagtattggtgaggtagcact
gtgtgttttcattgtactacagagttagattcagcactgggttgaagttt
tataattctgatatgataacaaaaatggtctgtacatgtatctgcagctg
ccgtcgtgagataggaaaatctctgtggtttctggtggtaatgagttaga
gctgctgctgatgtcagtggggtctgttgccttctgtttgccaggaaaga
gatgctgaatttcaatgaaaagttaggagaaatcagcacagagacctccc
tcctccttgaatgtgcattctagggattatatccttgccaacttgggttg
gagattccagacctcatggtagcatgcttgtctgtatgaaaagacaaaac
agtcaaaatgatgcccccttttgacatctcatgttcagcctggaaatcag
aatttattttaaaaatcatgttcgagtggactctcagaaccatgctatgt
tgccaatgtggctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54377549_54378736
seq2: B6Ng01-317M16.g_68_1232

seq1  GAATTCTGAGCCACTGAGCCTGACTCCAGAGACTGCTGCCCCACATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCACTGAGCCTGACTCCAGAGACTGCTGCCCCACATATGC  50

seq1  TCCATCCTTACATATTTGGGTCCCAGGGGAGAATAGGAGGTGGTCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTTACATATTTGGGTCCCAGGGGAGAATAGGAGGTGGTCTACTC  100

seq1  CACAATATTCTCTCTATCTAGAGCCCACCATCCTGTAAGTGAACATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATTCTCTCTATCTAGAGCCCACCATCCTGTAAGTGAACATGTAG  150

seq1  TGAACTGAATGATGGGATGCAGGCTTCTTTCTAAACAATCTTTTCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAATGATGGGATGCAGGCTTCTTTCTAAACAATCTTTTCCTACC  200

seq1  CATAATCCTTTACATAGCACCCCTAGCTCTCTCCAAACCTGGGCTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCCTTTACATAGCACCCCTAGCTCTCTCCAAACCTGGGCTTTGCC  250

seq1  CCTCCTCAGTCCCATATTTCCTTTGAGTATAAATACAGAGCTCTCCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGTCCCATATTTCCTTTGAGTATAAATACAGAGCTCTCCTTAT  300

seq1  TTGCTTAACTCTCAGAATTGTCACCCCTGGTCCACAACCATCTGGGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAACTCTCAGAATTGTCACCCCTGGTCCACAACCATCTGGGCTAC  350

seq1  ATCCCTTTTTGTACAAAAAAAGCCTTTGTCTTCTTATGAAAATGATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTTTGTACAAAAAAAGCCTTTGTCTTCTTATGAAAATGATGGGG  400

seq1  TCCCGCCCATAACTGTACCCAGCATTAACGGTGGTGGAGTGAGACTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCCATAACTGTACCCAGCATTAACGGTGGTGGAGTGAGACTTGCC  450

seq1  TCATGGAAAAAGAGAGCAGCATATTTCTTTGCATTTGAATACTTCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAAAGAGAGCAGCATATTTCTTTGCATTTGAATACTTCCAGGA  500

seq1  CCTTGCCTTGGCAGCAAACCAGTTCTGGATTGGCCCCCAGGATGCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTGGCAGCAAACCAGTTCTGGATTGGCCCCCAGGATGCTCACT  550

seq1  CTGTATGGTGCCATGGGTCTCTGGAAAATCTACTGAGTCTTGTGTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGTGCCATGGGTCTCTGGAAAATCTACTGAGTCTTGTGTGCCTC  600

seq1  TTGGATATTTTTTAAGTGCACAAAATTGGACTCATAGAGGAACAGTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTTTTTAAGTGCACAAAATTGGACTCATAGAGGAACAGTGGAA  650

seq1  TTAAATTATGTGGAAATAGGGTCACAGGAAAGTATTGGTGAGGTAGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGTGGAAATAGGGTCACAGGAAAGTATTGGTGAGGTAGCACT  700

seq1  GTGTGTTTTCATTGTACTACAGAGTTAGATTCAGCACTGGGTTGAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTCATTGTACTACAGAGTTAGATTCAGCACTGGGTTGAAGTTT  750

seq1  TATAATTCTGATATGATAACAAAAATGGTCTGTACATGTATCTGCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCTGATATGATAACAAAAATGGTCTGTACATGTATCTGCAGCTG  800

seq1  CCGTCGTGAGATAGGAAAATCTCTGTGGTTTCTGGTGGTAATGAGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCGTGAGATAGGAAAATCTCTGTGGTTTCTGGTGGTAATGAGTTAGA  850

seq1  GCTGCTGCTGATGTCAGTGGGGTCTGTTGCC-TCTGTTTGCCAGGAAAGA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGCTGCTGATGTCAGTGGGGTCTGTTGCCTTCTGTTTGCCAGGAAAGA  900

seq1  GATGCTGAATTTCAATGAAAAGTTAGGAGAAATCAGCACAGAGA-CTCCC  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATGCTGAATTTCAATGAAAAGTTAGGAGAAATCAGCACAGAGACCTCCC  950

seq1  TCCTCCTTGAATGTGCATTCTAGGGAATTATAATCCTTGCCAACTTGGGT  998
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TCCTCCTTGAATGTGCATTCTAGGG-ATTAT-ATCCTTGCCAACTTGGGT  998

seq1  TGGAGATTCCAGACCTCATGGTAGCCATGGCTTGTCTGTAATGAAAAGAC  1048
      |||||||||||||||||||||||| ||| |||||||||| ||||||||||
seq2  TGGAGATTCCAGACCTCATGGTAG-CAT-GCTTGTCTGT-ATGAAAAGAC  1045

seq1  CAAAAAACAGGTTCAAAAATGATGCCCCCCTTTTGACATTCTCATTGTCA  1098
         |||||||  || ||||||||| ||||||||||||| ||||||  |||
seq2  ---AAAACAG--TC-AAAATGATG-CCCCCTTTTGACA-TCTCATGTTCA  1087

seq1  GGGCTGGAAATCAAGGATTTATTTTTTAAAAAAATCAATGTTCTGAGTGG  1148
       | ||||||||| || |||||||||    ||||||| |||||| ||||| 
seq2  -GCCTGGAAATC-AGAATTTATTTT----AAAAATC-ATGTTC-GAGTG-  1128

seq1  TGACTCTCCAAGAACACTTGCTATGTCGCC-ATGTGCCTGT  1188
       |||||||  ||||| | |||||||| ||| ||||| ||||
seq2  -GACTCTC--AGAAC-CATGCTATGTTGCCAATGTGGCTGT  1165