BAC Information

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BAC

Clone NameB6Ng01-317M22
Chromosome9 (Build37)
Map Location 110,613,240 - 110,740,802
singlet/doubletdoublet
Overlap geneCcdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230
Upstream geneEG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2
Downstream gene1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M22.bB6Ng01-317M22.g
ACCGA107861GA107862
length1,0291,023
definitionB6Ng01-317M22.b B6Ng01-317M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,613,240 - 110,614,279)(110,739,766 - 110,740,802)
sequence
gaattctggaagccccaggagtgggggtcggaggctgtggcaagaggtgg
aatagggctggcagttggccacggcaagttcctctccgatgccgacttag
tggggacataacaggaggatcccaaggagccagccaccatgtgtctcagt
gtccgccttgactgggtctgtggtacacatccccttatctcagtggagct
gggaagaatgatgggtcttggggtccagaagagcagagcaggcagcatct
caggcagctgaggatataaatatcaaagcactgcaggaggatctcagggc
cacaccacgaaagcccttagcttctcagtttcccctctttcctgttccag
ggatctcaagagagatgtggccaagaagctagagaagctagaaaagcgga
cccagagagccatcgcggagctgatccgtaagtgccggctgccccgtggg
ctgggtcctgccctcaggacagtggcttcagcacagccctttccacttgt
ttgctctccatccaggtgagcggctaaaaggccaggaggacagcctggcc
tctgcagtggatgccaccaccggacaagaggcttgtgactctgactgaca
tgttgtccgtgtcccatctgatctgttcagcacacacatcctgtgggaag
atggtctcaggcagggagggggttaggctggccagtacttctgggtcttg
agaactgagccaacctactgagtctcagtttctgttggtgtgacctgttc
atcgcccaagggtgcccaccacgccgagtggctcaaagctgggatctgta
catatgtatgcaaactgagcttttttcaacttctgcaaataaacctctat
ttagtagaggcctgtttgtttcatttcctagttgctctggatttgaactc
tttgaatgcagaggttatgctctgtgatcttaaccctgggttgggcctgc
ctagtagcctggagggagtgggtaagggtcaagttgacctgctgaggtaa
gacagccagtgaccttctgctccagtctc
gaattcagcttaggctccttcccatttcaaagagaagagactgtcatgga
gaggacagtggacctcaagggtactgaaccgaataagcaatgacagttac
agagataaagaaagacacagagagacctttcagccggagactgagatcca
cagagggagacctgtgcccaacctcaagacaatgcggaaacaaaacaggg
atttcaagatgagaaatgccttccttgcacacaggatcctgttcttcaaa
gctgtactgtccgctgcatttctttgatgcccccctccaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaacccaaccaaccaaaaaaaagacctcccctc
ctctctatgggaggtctttaccctaagcagtctggagctcacagttatta
gtggtctaccatttgccaagatttatgaacgaatgaatgaatgaatgaac
atcagtgcagagattctaaataaagtacaatgtgctgagggtgtgtgtgg
caaacacctttaatcccagcgttcaggaggcagaggcaagcggatcactg
tgagtttaaggccagcctgatctacacaaggagttccaaatagccagggc
gatgtagagagatcctgtctccaataaacagataaaataataaaaataaa
aacaaaaaatttaaagagaggagacagaaaacctcaaaacatatttgcgg
gaagcaggtgtgctgcatgggccaagatggtgccctgaccccttgccagg
ccctgtgaaacccacatgtttactgccttgcccgaacatgcgcagtgaaa
ctgcatgcgtaagctgcctgccaagttagattattcctcgtgatccggat
ctgtcagcctatctgtgaccgacctgaggttgtgcctggagtgtgtgtga
tctgatggatgagtggtgtggaggcgagatgaggtcagtgccgctaacgt
ataatatagccttgcctaagtaaaagagctgtaagtaaagctgcgacaaa
aggctgcaagtaagagacgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110613240_110614279
seq2: B6Ng01-317M22.b_48_1076

seq1  GAATTCTGGAAGCCCCAGGAGTGGGGGTCGGAGGCTGTGGCAAGAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAGCCCCAGGAGTGGGGGTCGGAGGCTGTGGCAAGAGGTGG  50

seq1  AATAGGGCTGGCAGTTGGCCACGGCAAGTTCCTCTCCGATGCCGACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCTGGCAGTTGGCCACGGCAAGTTCCTCTCCGATGCCGACTTAG  100

seq1  TGGGGACATAACAGGAGGATCCCAAGGAGCCAGCCACCATGTGTCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACATAACAGGAGGATCCCAAGGAGCCAGCCACCATGTGTCTCAGT  150

seq1  GTCCGCCTTGACTGGGTCTGTGGTACACATCCCCTTATCTCAGTGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCCTTGACTGGGTCTGTGGTACACATCCCCTTATCTCAGTGGAGCT  200

seq1  GGGAAGAATGATGGGTCTTGGGGTCCAGAAGAGCAGAGCAGGCAGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATGATGGGTCTTGGGGTCCAGAAGAGCAGAGCAGGCAGCATCT  250

seq1  CAGGCAGCTGAGGATATAAATATCAAAGCACTGCAGGAGGATCTCAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTGAGGATATAAATATCAAAGCACTGCAGGAGGATCTCAGGGC  300

seq1  CACACCACGAAAGCCCTTAGCTTCTCAGTTTCCCCTCTTTCCTGTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACGAAAGCCCTTAGCTTCTCAGTTTCCCCTCTTTCCTGTTCCAG  350

seq1  GGATCTCAAGAGAGATGTGGCCAAGAAGCTAGAGAAGCTAGAAAAGCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAAGAGAGATGTGGCCAAGAAGCTAGAGAAGCTAGAAAAGCGGA  400

seq1  CCCAGAGAGCCATCGCGGAGCTGATCCGTAAGTGCCGGCTGCCCCGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGCCATCGCGGAGCTGATCCGTAAGTGCCGGCTGCCCCGTGGG  450

seq1  CTGGGTCCTGCCCTCAGGACAGTGGCTTCAGCACAGCCCTTTCCACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTGCCCTCAGGACAGTGGCTTCAGCACAGCCCTTTCCACTTGT  500

seq1  TTGCTCTCCATCCAGGTGAGCGGCTAAAAGGCCAGGAGGACAGCCTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCATCCAGGTGAGCGGCTAAAAGGCCAGGAGGACAGCCTGGCC  550

seq1  TCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTGGATGCCACCACCGGACAAGAGGCTTGTGACTCTGACTGACA  600

seq1  TGTTGTCCGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCGTGTCCCATCTGATCTGTTCAGCACACACATCCTGTGGGAAG  650

seq1  ATGGTCTCAGGCAGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCAGGCAGGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTG  700

seq1  AGAACTGAGCCAACCTACTGAGTCTCAGTTTCTGTTGGTGTGACCTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGCCAACCTACTGAGTCTCAGTTTCTGTTGGTGTGACCTGTTC  750

seq1  ATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCCAAGGGTGCCCACCACGCCGAGTGGCTCAAAGCTGGGATCTGTA  800

seq1  CATATGTATGCAAACTGAGCTTTTTTCAACTTCTGCAAATAAACCTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGCAAACTGAGCTTTTTTCAACTTCTGCAAATAAACCTCTAT  850

seq1  TTAGTAGAGGCCTG-TTGTTTCATTTCCTAGTTGCTCTGGATTTGAACTC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAGGCCTGTTTGTTTCATTTCCTAGTTGCTCTGGATTTGAACTC  900

seq1  TTTGAATGCAGAGGTTATGCTCTGTGATCTTAACCCTGGGTTGGGCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGAATGCAGAGGTTATGCTCTGTGATCTTAACCCTGGGTTGGGCCTGC  950

seq1  CTAGTTAAGCCTGGAGGGGAGTGGGT-AGGGCCAAGGTTGACCTGCCTGG  998
      |||||  |||||||| |||||||||| |||| ||| ||||||||||    
seq2  CTAGT--AGCCTGGA-GGGAGTGGGTAAGGGTCAA-GTTGACCTGC----  992

seq1  AGGGGTAGGCAGGGCCAAGGTTGACCTTCTGCTCCAGGTCTC  1040
       | |||| | |  ||||    ||||||||||||||| |||||
seq2  TGAGGTAAG-ACAGCCA---GTGACCTTCTGCTCCA-GTCTC  1029

seq1: chr9_110739766_110740802
seq2: B6Ng01-317M22.g_66_1088 (reverse)

seq1  GCAACGTCCTCTTTACTTGCAGCTTTTTTTCTCCGCAGCTTTTTACTTAC  50
      ||||||| ||| ||||||||||| |||| |   ||||||  |||||||||
seq2  GCAACGT-CTC-TTACTTGCAGCCTTTTGT---CGCAGC--TTTACTTAC  43

seq1  AGCTCTTTTTACTTAGGGCAAGGGCTATATTTATACCGTAGCGGCAACTG  100
      ||||| ||||||||| ||||| ||||||| ||||||  ||||||| ||||
seq2  AGCTC-TTTTACTTA-GGCAA-GGCTATA-TTATACGTTAGCGGC-ACTG  88

seq1  ACCTCATCTCG-CTCCACACCACCTCATCCAATCAGAATCACACACACTC  149
      ||||||||||| |||||||||| ||||||| ||||| |||||||||||||
seq2  ACCTCATCTCGCCTCCACACCA-CTCATCC-ATCAG-ATCACACACACTC  135

seq1  CAGGCACAACCTCAGGTCGGTCACAGATAGGCTGACAGATCCGGATCACG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAACCTCAGGTCGGTCACAGATAGGCTGACAGATCCGGATCACG  185

seq1  AGGAATAATCTAACTTGGCAGGCAGCTTACGCATGCAGTTTCACTGCGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATCTAACTTGGCAGGCAGCTTACGCATGCAGTTTCACTGCGCA  235

seq1  TGTTCGGGCAAGGCAGTAAACATGTGGGTTTCACAGGGCCTGGCAAGGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGGCAAGGCAGTAAACATGTGGGTTTCACAGGGCCTGGCAAGGGG  285

seq1  TCAGGGCACCATCTTGGCCCATGCAGCACACCTGCTTCCCGCAAATATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCACCATCTTGGCCCATGCAGCACACCTGCTTCCCGCAAATATGT  335

seq1  TTTGAGGTTTTCTGTCTCCTCTCTTTAAATTTTTTGTTTTTATTTTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTTTTCTGTCTCCTCTCTTTAAATTTTTTGTTTTTATTTTTATT  385

seq1  ATTTTATCTGTTTATTGGAGACAGGATCTCTCTACATCGCCCTGGCTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTGTTTATTGGAGACAGGATCTCTCTACATCGCCCTGGCTATT  435

seq1  TGGAACTCCTTGTGTAGATCAGGCTGGCCTTAAACTCACAGTGATCCGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCCTTGTGTAGATCAGGCTGGCCTTAAACTCACAGTGATCCGCT  485

seq1  TGCCTCTGCCTCCTGAACGCTGGGATTAAAGGTGTTTGCCACACACACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCTGAACGCTGGGATTAAAGGTGTTTGCCACACACACCC  535

seq1  TCAGCACATTGTACTTTATTTAGAATCTCTGCACTGATGTTCATTCATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACATTGTACTTTATTTAGAATCTCTGCACTGATGTTCATTCATTC  585

seq1  ATTCATTCGTTCATAAATCTTGGCAAATGGTAGACCACTAATAACTGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCGTTCATAAATCTTGGCAAATGGTAGACCACTAATAACTGTGA  635

seq1  GCTCCAGACTGCTTAGGGTAAAGACCTCCCATAGAGAGGAGGGGAGGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACTGCTTAGGGTAAAGACCTCCCATAGAGAGGAGGGGAGGTCT  685

seq1  TTTTTTTGGTTGGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTTGGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  735

seq1  GGAGGGGGGCATCAAAGAAATGCAGCGGACAGTACAGCTTTGAAGAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGCATCAAAGAAATGCAGCGGACAGTACAGCTTTGAAGAACAG  785

seq1  GATCCTGTGTGCAAGGAAGGCATTTCTCATCTTGAAATCCCTGTTTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGTGCAAGGAAGGCATTTCTCATCTTGAAATCCCTGTTTTGTT  835

seq1  TCCGCATTGTCTTGAGGTTGGGCACAGGTCTCCCTCTGTGGATCTCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCATTGTCTTGAGGTTGGGCACAGGTCTCCCTCTGTGGATCTCAGTC  885

seq1  TCCGGCTGAAAGGTCTCTCTGTGTCTTTCTTTATCTCTGTAACTGTCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCTGAAAGGTCTCTCTGTGTCTTTCTTTATCTCTGTAACTGTCATT  935

seq1  GCTTATTCGGTTCAGTACCCTTGAGGTCCACTGTCCTCTCCATGACAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCGGTTCAGTACCCTTGAGGTCCACTGTCCTCTCCATGACAGTC  985

seq1  TCTTCTCTTTGAAATGGGAAGGAGCCTAAGCTGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTTGAAATGGGAAGGAGCCTAAGCTGAATTC  1023