BAC Information

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BAC

Clone NameB6Ng01-318K17
Chromosome9 (Build37)
Map Location 122,818,737 - 123,000,660
singlet/doubletdoublet
Overlap geneZfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3
Upstream geneCcbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257
Downstream geneExosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318K17.bB6Ng01-318K17.g
ACCGA108496GA108497
length9531,138
definitionB6Ng01-318K17.b B6Ng01-318K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,999,715 - 123,000,660)(122,818,737 - 122,819,846)
sequence
gaattcctctccatgaggtagtaacggtttccacagccctgaggttcaaa
cagacaagtgtggaagagggaattttggtggggattgggaggggaccctg
ctggaaccctcaaggcactttcatcacaggctcaggtggctggacaggtg
ggaccttggtcttctgggagtttgtgcaattggagacacactttcaggaa
ggctctaatcaccagctgactaataaacaatgatgagaatattacatgag
gctctggttaccctcacaaaggggcttcctctggcagccctgtgtgggct
ctctaaggtttataggaaattctgggagctagtaccttcaggtactttcc
tggcctgcctcactgcatctgtgtctgcattccacagctcttatcattgc
ttctttgcagggcaggaggactgttatttggccagtgtctgaagtcactt
tagctggagtctgttccctgtgagacatctcggttgcaaaagcaaaccac
aacttgcatgcatctttgcatttcttaagaagtttttttttccgggctgg
caagatgactcaacgggtaagagcatgactgctcttccaggggtcctgag
ttcaaatcccagcaaccacatggtggctcacaaccacccattatgaaatc
ttacgccctctctgggtgcatctgaagtcagttacagtgtacctatgtat
aataaataaatctttaaaaaaaagaagaagaagaagaagttgttcttctc
ctcctaaaattcttccataggatagatcctaacaaccagctcttgttcct
tctgccttgctggcctgctccagtttggggaagtggtgctctgtgtgaag
cctccaaccccctacgcacacaccctctggatcctaatttgagttgttgt
gcagcacaggtacgcaagcttttgctttccctgcttgacctttgcacagc
agt
gaattcacactggggagaagccctacgagtgtgccgagtgtgggaaagcc
ttcatcttcaggaaggctcttaatgaacaccagagactccaccgcagaga
gaaaccttacaaatgtaatgagtgtgggaaagcctttacttctaaccgaa
accttatagatcatcagagagttcacactggagagaagccttataaatgt
aatgaatgtggtaagacattcaggcagacatctcaggttattctacattt
gagaactcatactaaagagaaaccctataagtgtagtgagtgtgggagag
cttatcgttacagctcccagctcattcagcatcaaaggaagcacaatgaa
gagaaagaaaccttactgtttaccagccaggtgtgatggcacttgccgtt
aatcccggcatttaggagacattagttttaggccagcctggtctacatag
cgagttctagactagccaaggccacaaagtgagaccctgtcttagggaaa
aaaatggcaataatgttaattactactttttcgaaaattagattttttaa
taacattaaaattaattctgcttctacaaatccgtacacagaaaatagta
agtagctaaagtctaacaaaagggatattcatgccaacattatacatagc
taaaggggaaaacaaagaaacaaacaaaataccaaaccaaacaaccaaac
agagaccacccaaactgtagattattatatgagcagtgtgaaaggaaatg
atagtctattcatattatgcttctgaaacccattttgttttttaaaagaa
ttttttaatgtatgccatgggagaaatttctgggataacatgggaaagtg
gaggaatgaaatatccaggataaaatattttcacctagaaaacggagaaa
gagagaaccaaacctaaattttcaccatagtttattcttcgaggtgataa
ggttgtaggattattttctatttttctttctgtatactttttcttaggct
ttcttagattttttctacaatggagagtggttactttttaatatttacaa
aaaaggtataattctatttttaaatacaggcacaattgcttgctttttaa
tcagtgggtagcaacgtacctattgtggtagtttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122999715_123000660
seq2: B6Ng01-318K17.b_48_1000 (reverse)

seq1  ACTGCTGTGCAAA-GTC-AGCAGGG--AGC-AAAGCCTGCGTACCTGTGC  45
      ||||||||||||| ||| |||||||  ||| ||||| |||||||||||||
seq2  ACTGCTGTGCAAAGGTCAAGCAGGGAAAGCAAAAGCTTGCGTACCTGTGC  50

seq1  TGCACAACAACTCAAA-TAGGATCCAGAGGGTGTGTGCGTA-GGGGTTGG  93
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TGCACAACAACTCAAATTAGGATCCAGAGGGTGTGTGCGTAGGGGGTTGG  100

seq1  AGGCTTCACACAGAGCACCACTTCCCCAAACTGGAGCAGGCCAGCAAGGC  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACACAGAGCACCACTTCCCCAAACTGGAGCAGGCCAGCAAGGC  150

seq1  AGAAGGAACAAGAGCTGGTTGTTAGGATCTATCCTATGGAAGAATTTTAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACAAGAGCTGGTTGTTAGGATCTATCCTATGGAAGAATTTTAG  200

seq1  GAGGAGAAGAACAACTTCTTCTTCTTCTTCTTTTTTTTTAAAGATTTATT  243
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGGAGAAGAACAACTTCTTCTTCTTCTTC-TTTTTTTTAAAGATTTATT  249

seq1  TATTATACATAGGTACACTGTAACTGACTTCAGATGCA-CCAGAGAGGGC  292
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTATACATAGGTACACTGTAACTGACTTCAGATGCACCCAGAGAGGGC  299

seq1  GTAAGATTTCATAATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTTCATAATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATT  349

seq1  TGAACTCAGGACCCCTGGAAGAGCAGTCATGCTCTTACCCGTTGAGTCAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCCCTGGAAGAGCAGTCATGCTCTTACCCGTTGAGTCAT  399

seq1  CTTGCCAGCCCGGAAAAAAAAACTTCTTAAGAAATGCAAAGATGCATGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGCCCGGAAAAAAAAACTTCTTAAGAAATGCAAAGATGCATGCA  449

seq1  AGTTGTGGTTTGCTTTTGCAACCGAGATGTCTCACAGGGAACAGACTCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGTTTGCTTTTGCAACCGAGATGTCTCACAGGGAACAGACTCCA  499

seq1  GCTAAAGTGACTTCAGACACTGGCCAAATAACAGTCCTCCTGCCCTGCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTGACTTCAGACACTGGCCAAATAACAGTCCTCCTGCCCTGCAA  549

seq1  AGAAGCAATGATAAGAGCTGTGGAATGCAGACACAGATGCAGTGAGGCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAATGATAAGAGCTGTGGAATGCAGACACAGATGCAGTGAGGCAG  599

seq1  GCCAGGAAAGTACCTGAAGGTACTAGCTCCCAGAATTTCCTATAAACCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAGTACCTGAAGGTACTAGCTCCCAGAATTTCCTATAAACCTT  649

seq1  AGAGAGCCCACACAGGGCTGCCAGAGGAAGCCCCTTTGTGAGGGTAACCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCCACACAGGGCTGCCAGAGGAAGCCCCTTTGTGAGGGTAACCA  699

seq1  GAGCCTCATGTAATATTCTCATCATTGTTTATTAGTCAGCTGGTGATTAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATGTAATATTCTCATCATTGTTTATTAGTCAGCTGGTGATTAG  749

seq1  AGCCTTCCTGAAAGTGTGTCTCCAATTGCACAAACTCCCAGAAGACCAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTGAAAGTGTGTCTCCAATTGCACAAACTCCCAGAAGACCAAG  799

seq1  GTCCCACCTGTCCAGCCACCTGAGCCTGTGATGAAAGTGCCTTGAGGGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCTGTCCAGCCACCTGAGCCTGTGATGAAAGTGCCTTGAGGGTT  849

seq1  CCAGCAGGGTCCCCTCCCAATCCCCACCAAAATTCCCTCTTCCACACTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGGTCCCCTCCCAATCCCCACCAAAATTCCCTCTTCCACACTTG  899

seq1  TCTGTTTGAACCTCAGGGCTGTGGAAACCGTTACTACCTCATGGAGAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGAACCTCAGGGCTGTGGAAACCGTTACTACCTCATGGAGAGGA  949

seq1  ATTC  946
      ||||
seq2  ATTC  953

seq1: chr9_122818737_122819846
seq2: B6Ng01-318K17.g_73_1210

seq1  GAATTCACACTGGGGAGAAGCCCTACGAGTGTGCCGAGTGTGGGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGGGAGAAGCCCTACGAGTGTGCCGAGTGTGGGAAAGCC  50

seq1  TTCATCTTCAGGAAGGCTCTTAATGAACACCAGAGACTCCACCGCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTCAGGAAGGCTCTTAATGAACACCAGAGACTCCACCGCAGAGA  100

seq1  GAAACCTTACAAATGTAATGAGTGTGGGAAAGCCTTTACTTCTAACCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTACAAATGTAATGAGTGTGGGAAAGCCTTTACTTCTAACCGAA  150

seq1  ACCTTATAGATCATCAGAGAGTTCACACTGGAGAGAAGCCTTATAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATAGATCATCAGAGAGTTCACACTGGAGAGAAGCCTTATAAATGT  200

seq1  AATGAATGTGGTAAGACATTCAGGCAGACATCTCAGGTTATTCTACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTGGTAAGACATTCAGGCAGACATCTCAGGTTATTCTACATTT  250

seq1  GAGAACTCATACTAAAGAGAAACCCTATAAGTGTAGTGAGTGTGGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCATACTAAAGAGAAACCCTATAAGTGTAGTGAGTGTGGGAGAG  300

seq1  CTTATCGTTACAGCTCCCAGCTCATTCAGCATCAAAGGAAGCACAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCGTTACAGCTCCCAGCTCATTCAGCATCAAAGGAAGCACAATGAA  350

seq1  GAGAAAGAAACCTTACTGTTTACCAGCCAGGTGTGATGGCACTTGCCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAACCTTACTGTTTACCAGCCAGGTGTGATGGCACTTGCCGTT  400

seq1  AATCCCGGCATTTAGGAGACATTAGTTTTAGGCCAGCCTGGTCTACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGGCATTTAGGAGACATTAGTTTTAGGCCAGCCTGGTCTACATAG  450

seq1  CGAGTTCTAGACTAGCCAAGGCCACAAAGTGAGACCCTGTCTTAGGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCTAGACTAGCCAAGGCCACAAAGTGAGACCCTGTCTTAGGGAAA  500

seq1  AAAATGGCAATAATGTTAATTACTACTTTTTCGAAAATTAGATTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAATAATGTTAATTACTACTTTTTCGAAAATTAGATTTTTTAA  550

seq1  TAACATTAAAATTAATTCTGCTTCTACAAATCCGTACACAGAAAATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAAAATTAATTCTGCTTCTACAAATCCGTACACAGAAAATAGTA  600

seq1  AGTAGCTAAAGTCTAACAAAAGGGATATTCATGCCAACATTATACATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAAAGTCTAACAAAAGGGATATTCATGCCAACATTATACATAGC  650

seq1  TAAAGGGGAAAACAAAGAAACAAACAAAATACCAAACCAAACAACCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGAAAACAAAGAAACAAACAAAATACCAAACCAAACAACCAAAC  700

seq1  AGAGACCACCCAAACTGTAGATTATTATATGAGCAGTGTGAAAGG-AATG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGACCACCCAAACTGTAGATTATTATATGAGCAGTGTGAAAGGAAATG  750

seq1  ATAGTCTATTCATATTATGCTTCTGAAA-CCATTTTG-TTTTTAAAAGAA  797
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  ATAGTCTATTCATATTATGCTTCTGAAACCCATTTTGTTTTTTAAAAGAA  800

seq1  -TTTTTAATGTATGCCATGGGAGAAATTTCT-GGATAACAT-GGAAAGTG  844
       |||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TTTTTTAATGTATGCCATGGGAGAAATTTCTGGGATAACATGGGAAAGTG  850

seq1  GAGGAATGAAATATCCA-GATAAAATATTTTCACCTAGGAAAACGGAGAA  893
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  GAGGAATGAAATATCCAGGATAAAATATTTTCACCTA-GAAAACGGAGAA  899

seq1  AGAGAAGAACCAAACCTAAATTTTCACCATAG-TTAT--CTCGAGGTGAT  940
      |||| ||||||||||||||||||||||||||| ||||   ||||||||||
seq2  AGAG-AGAACCAAACCTAAATTTTCACCATAGTTTATTCTTCGAGGTGAT  948

seq1  -AGGTTGTA-GATTA-TTTCTATTTT--CTTCTGTATACTTTT--CTAGG  983
       |||||||| ||||| ||||||||||   ||||||||||||||   ||||
seq2  AAGGTTGTAGGATTATTTTCTATTTTTCTTTCTGTATACTTTTTCTTAGG  998

seq1  CTTTC-TAGA--TTTTCTACAAT-GAGAGT-GTTACTTTT--ATATTTAC  1026
      ||||| ||||  ||||||||||| |||||| |||||||||  ||||||||
seq2  CTTTCTTAGATTTTTTCTACAATGGAGAGTGGTTACTTTTTAATATTTAC  1048

seq1  AAAAAA-GTATAA-TCTA-TTTTAAATACAAGCACA--TGCTTGTTTTTA  1071
      |||||| |||||| |||| ||||||||||| |||||  |||||| |||| 
seq2  AAAAAAGGTATAATTCTATTTTTAAATACAGGCACAATTGCTTGCTTTTT  1098

seq1  ATTCAGTGGTAGGAAAAGTACCTATTGT-GTAGTCTTTAA  1110
      | |||||||   | || ||||||||||| ||||| |||||
seq2  AATCAGTGGGTAGCAACGTACCTATTGTGGTAGTTTTTAA  1138