BAC Information

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BAC

Clone NameB6Ng01-319B17
Chromosome9 (Build37)
Map Location 112,213,039 - 112,214,186
singlet/doubletsinglet
Overlap geneLOC620760
Upstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B17.bB6Ng01-319B17.g
ACCGA108825GA108826
length1,1611,149
definitionB6Ng01-319B17.b B6Ng01-319B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaaggtctttcatttctttctttatttcttccatgacctagt
taccattgagtagaaacttgttcagtttccatgagtatgtgggctttcta
ttgttccattattaatctctaaccttagtccatggtgatctgacaggatg
cataggattatttcaaacttcttgtatctgttgaggcttgatttttgttt
gattatacggccaatttttcagaaggtaccatgaggtgctgaagagacgg
tatattcttttgttttagggtgaaatgttctgtacatatttgataaatcc
atttgcttcataacttatattactttcactgtgcctctgtttagtttttg
tttcaatgacctgcccattggtgagaataaggccttgacgttccccacta
ttattgtgtgaggttccgtgtgtgttttgagttttactaaagtttctttt
ctaaatgtgggcacccttgcatatgaggcataggtgtccagaattgagac
ttcctcttggtggatttttcctttgttgagtatgaagtgtccatccttat
ctattttggtaacttttgactgaaatatatactttattggatgttagaat
gctactccagcacgtttcttgggattatttgcttagaaaacttttttcca
gccttttactctgaggtgagtttcctgtatgcagctaaacactagatctt
tgtagatccaacctgttagcttatgtctttttattggagaattgagtctg
ttgatgctgagagatattaaggacaggagattgttagtttctgttctgtt
tgttgttggaagtgtattatgtgtgtgtgattctctcctttttggtttgt
tgttaaatgtttaatttctcaattttttctttgtggtagataccctccct
tgtgttggagttttccttctagaatcatctgtagagctgaattggtagac
agacattgtttaaatttagttttgtcatagagcatttttggtttcttctg
ttctatggtgattagatttttaactgagtatagtagccttgaatgcattg
tgttctcttagtgtctgcacgacatctcttcagatctttctggccttgaa
gtttctgtttggaatgtcagggttaatcctgaataggtttgccctttatt
tagtgttactg

gaattcacgcattatgttttgttattcattcaacatacatttgcactatt
taagaaatgttttattctatttatttattttgtatgttgtatatatgtgt
aatcacacacatttaaggaagcacacacagaggtcaaaggatggtctgtt
agctctttgtactatgtaggccctggtataacagagccctagaaattagg
agacaccttactgggagtgaaggtagctagttccaagaacactgggccat
gctcctaatagaaagagatggagagattgttcaggttttctgcctgacag
ccttggtcttgcaaagtgaatgacaaagctgactctgggctctttatgaa
tgtgagtgcacacaccatcacacatgcacacatacctacatacaaaagtc
ccttatccttaatcctgattacatttatttttatagatgaatggttatga
cctcaaagaaatccccacagaaaatactcagatgccttattttctatgca
tcacacacatctaagggtgtgattttgtttgccagagatctgtatgggtc
ttgggagccactgcatcttagatgtactatgttgaaaaggctggggatgt
agctcagttggcagagtgcttacttagcaggaggccctgtatgcataaat
aggacatggtggtacccacccgtaatcccagcactcatgaagttaggaca
ggagaatcaagggtttgaggctagcctggactagacgagctgtctccaaa
caaaataagaacttgagaagagagagaaagttggtgcaaaaataatgctg
tgttttacgactggcatacactcacactgtaatcataagaaaaattagct
gaagtccttggctctcagacgaaaggctttaaaacagtgtttgagatctt
tgtacaagtgacacacagagaaagcatcagagagctgggaagcaggcaag
gtacagagaaatggccaacataaaaataaagagactgtggtagagctctg
tgaccaatacagatgtcactctgactctcagagaacacagctgccagaat
acagcccctgtcttccctagctcccctctataaactctgctaacgaattc
ggaaataactccctgccagttcagtactgtaagcatgcaagtcaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112213039_112214186
seq2: B6Ng01-319B17.g_67_1215

seq1  GAATTCACGCATTATGTTTTGTTATTCATTCAACATACATTTGCACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCATTATGTTTTGTTATTCATTCAACATACATTTGCACTATT  50

seq1  TAAGAAATGTTTTATTCTATTTATTTATTTTGTATGTTGTATATATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGTTTTATTCTATTTATTTATTTTGTATGTTGTATATATGTGT  100

seq1  AATCACACACATTTAAGGAAGCACACACAGAGGTCAAAGGATGGTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACACATTTAAGGAAGCACACACAGAGGTCAAAGGATGGTCTGTT  150

seq1  AGCTCTTTGTACTATGTAGGCCCTGGTATAACAGAGCCCTAGAAATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGTACTATGTAGGCCCTGGTATAACAGAGCCCTAGAAATTAGG  200

seq1  AGACACCTTACTGGGAGTGAAGGTAGCTAGTTCCAAGAACACTGGGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTTACTGGGAGTGAAGGTAGCTAGTTCCAAGAACACTGGGCCAT  250

seq1  GCTCCTAATAGAAAGAGATGGAGAGATTGTTCAGGTTTTCTGCCTGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAATAGAAAGAGATGGAGAGATTGTTCAGGTTTTCTGCCTGACAG  300

seq1  CCTTGGTCTTGCAAAGTGAATGACAAAGCTGACTCTGGGCTCTTTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCTTGCAAAGTGAATGACAAAGCTGACTCTGGGCTCTTTATGAA  350

seq1  TGTGAGTGCACACACCATCACACATGCACACATACCTACATACAAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGCACACACCATCACACATGCACACATACCTACATACAAAAGTC  400

seq1  CCTTATCCTTAATCCTGATTACATTTATTTTTATAGATGAATGGTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCCTTAATCCTGATTACATTTATTTTTATAGATGAATGGTTATGA  450

seq1  CCTCAAAGAAATCCCCACAGAAAATACTCAGATGCCTTATTTTCTATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGAAATCCCCACAGAAAATACTCAGATGCCTTATTTTCTATGCA  500

seq1  TCACACACATCTAAGGGTGTGATTTTGTTTGCCAGAGATCTGTATGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACATCTAAGGGTGTGATTTTGTTTGCCAGAGATCTGTATGGGTC  550

seq1  TTGGGAGCCACTGCATCTTAGATGTACTATGTTGAAAAGGCTGGGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCACTGCATCTTAGATGTACTATGTTGAAAAGGCTGGGGATGT  600

seq1  AGCTCAGTTGGCAGAGTGCTTACTTAGCAGGAGGCCCTGTATGCATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTGGCAGAGTGCTTACTTAGCAGGAGGCCCTGTATGCATAAAT  650

seq1  AGGACATGGTGGTACCCACCCGTAATCCCAGCACTCATGAAGTTAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGGTGGTACCCACCCGTAATCCCAGCACTCATGAAGTTAGGACA  700

seq1  GGAGAATCAAGGGTTTGAGGCTAGCCTGGACTAGACGAGCTGTCTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCAAGGGTTTGAGGCTAGCCTGGACTAGACGAGCTGTCTCCAAA  750

seq1  CAAAATAAGAACTTGAGAAGAGAGAGAAAGTTGGTGCAAAAATAATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGAACTTGAGAAGAGAGAGAAAGTTGGTGCAAAAATAATGCTG  800

seq1  TGTTTTACGACTGGCATACACTCACACTGTAATCATAAGAAAAATTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACGACTGGCATACACTCACACTGTAATCATAAGAAAAATTAGCT  850

seq1  GAAGTCCTTGGCTCTCAGACGAAAGGCTTTAAAACAGTGTTTGAGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTTGGCTCTCAGACGAAAGGCTTTAAAACAGTGTTTGAGATCTT  900

seq1  TGTACAAGTGACACACAGAGAAAGCATCAGAGAGCTGGGAAGCAGGGCAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTACAAGTGACACACAGAGAAAGCATCAGAGAGCTGGGAAGCA-GGCAA  949

seq1  GGTACAGAGAAATGGCCAACAT-AAAATAAAGAGACTGTGGTAGAGCTCT  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTACAGAGAAATGGCCAACATAAAAATAAAGAGACTGTGGTAGAGCTCT  999

seq1  GTGACC-ATACAGATGTCACTCTGACTCTCAGGAGACACAGCTGGCAAGA  1048
      |||||| |||||||||||||||||||||||||   ||||||||| ||  |
seq2  GTGACCAATACAGATGTCACTCTGACTCTCAGAGAACACAGCTGCCAGAA  1049

seq1  TACAGCCCCTGTCTTCCCTAGCTCCCTCCTATAAACTCCTGCTTACAGAT  1098
      ||||||||||||||||||||||||||  ||||||||| ||||| ||  ||
seq2  TACAGCCCCTGTCTTCCCTAGCTCCCCTCTATAAACT-CTGCTAACGAAT  1098

seq1  TCGGAAATACTTCCCTGCGAG-TCAGTACTGT-AGCATGCAGAGTCCAGT  1146
      |||||||||  ||||||| || |||||||||| |||||||| |||| |||
seq2  TCGGAAATAACTCCCTGCCAGTTCAGTACTGTAAGCATGCA-AGTCAAGT  1147

seq1  GT  1148
      ||
seq2  GT  1149


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