BAC Information

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BAC

Clone NameB6Ng01-319L21
Chromosome9 (Build37)
Map Location 9,220,199 - 9,221,313
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319L21.bB6Ng01-319L21.g
ACCGA109297GA109298
length1,1941,098
definitionB6Ng01-319L21.b B6Ng01-319L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaattagcaccacagtagccttataataggatgttaaaacttt
aaggtgaagaagaatgattttacattaatgttttttcttgccaaagaata
gctgtggacacatttaataacaatagctagaatatgtagctaatatttga
ttaacaccaactataattgataccaatagattatagaagtttcctctact
ttctgttaaagcccttttggttctcaccagttaatttgaatctcacttga
tagcacctaaccaaggcttaggctctcctgtggtgagtttaaggtgaggt
ctttagccaattaacatctcctggaagcttttgaaaattaaattttgaag
caaataaatttctctttcttagattttctgtaactaaaatcttagatatt
aaaaatatattgcctctgaatcttatggagcaacaactattctccagaac
tttaaacttccctttagaggcattagctaataaaatactttgtacttagg
aaacaatatatactgaaagatttaaactctttgtttttttgtattgaagc
agacaataaaaatttcttacatattgtaaagctatgttagccatacctac
aggcaaaattatctagtgatcaccagtttgctgaaagcaaaactctttga
atttaagcattattttaaacatctaaatagatctgcaacaaacctaaaaa
gaaactcccttgaacacagaggaaactttctcaggcactgtttgcaaaat
aaaagaaggttacaagcttctctgggcctgccttgagccctgcattaact
caaacgtaaaatattttttaatctgagcattttggccttcctgtaataag
gaccgattttagaggaacaatttaactgtctatgcctctaatttttgata
ctatttctcaaaatgattactcttataattatcttaattgcaatatatgg
gtgagttaaaatcttaagctttcgatcaatttgcaaactgcagtcatggg
acactggccaattttaccataattttagtttccgttgcatattagaaata
tatctatactttggaaagcagaacccattttaaacaatttattctcctta
aaatcatactagaaaccatcaacttgttcccatttacgaagtaggctgca
tcatgaatggcatgacacggtgtaaatttaaatgttccccagtg

gaattcattgctaatcctctgaaatgttttaataattttagcagaagtag
gaatataaaatgccgctaaccacaacctttctacctcaggccatttaaga
aattactttacaggtgcgtagattttaactcccttttaagcaaattgatt
gatcatctgaagaccatttggaagatctgctaaaaagattccattttcac
aaaaacaggattccagaaatctttgcttcattcttgcacgacactctctc
ttgatttaaatagcagaaagtaagtcaggatattgataccacattagaaa
accatatctgctcagaggggccagacaaggtcagcgtcacaagtcttgcc
tttatttatttacttattcatttttttttttagtgaaaatgagcagaaga
gacactgtggtacagtaatttggctagaaaagatgcctggcaaatatgat
aaaatccaagccatatgaaagacatagacacatgggtctcctatgtcgaa
agacatagacatggggtaagagaatccagtgaagctgggcatagacaagg
caatgggctggggcagaccacagtagtacttctacaggaacaagtcttgc
agatcccctaaaggagaactagtaaacaagtaacattttattatctcaaa
ttcctcttggctaaagtctttaaaatgtccaagtgatgctcaacagaaat
tagagaaagtacaaattaacgttcatcccagcacaggtgggaagggctgg
acccttgagagatacagtcactgtgggacgccctgaagaactgtaggaac
ctcagccctggttctcactctctgttttccagctatcaaatacagaacag
ttttctatcccattcactccccacctcagcattctgccccgagctcccaa
aacatcaaacaaccgagaacggactgatgcgtgagacaaagggaaacctg
ggaaatatgagcccaaactacttgtctctgctgaaatatcgtctaaagta
ttttgttagtgattttaaaaataataaaaataaaccatgatgacacatgg
tataatgattggacttaatgcgacatctatcttctgtagcaagccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9220199_9221313
seq2: B6Ng01-319L21.g_68_1165

seq1  GAATTCATTGCTAATCCTCTGAAATGTTTTAATAATTTTAGCAGAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTAATCCTCTGAAATGTTTTAATAATTTTAGCAGAAGTAG  50

seq1  GAATATAAAATGCCGCTAACCACAACCTTTCTACCTCAGGCCATTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAAATGCCGCTAACCACAACCTTTCTACCTCAGGCCATTTAAGA  100

seq1  AATTACTTTACAGGTGCGTAGATTTTAACTCCCTTTTAAGCAAATTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTTACAGGTGCGTAGATTTTAACTCCCTTTTAAGCAAATTGATT  150

seq1  GATCATCTGAAGACCATTTGGAAGATCTGCTAAAAAGATTCCATTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTGAAGACCATTTGGAAGATCTGCTAAAAAGATTCCATTTTCAC  200

seq1  AAAAACAGGATTCCAGAAATCTTTGCTTCATTCTTGCACGACACTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGATTCCAGAAATCTTTGCTTCATTCTTGCACGACACTCTCTC  250

seq1  TTGATTTAAATAGCAGAAAGTAAGTCAGGATATTGATACCACATTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAAATAGCAGAAAGTAAGTCAGGATATTGATACCACATTAGAAA  300

seq1  ACCATATCTGCTCAGAGGGGCCAGACAAGGTCAGCGTCACAAGTCTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTGCTCAGAGGGGCCAGACAAGGTCAGCGTCACAAGTCTTGCC  350

seq1  TTTATTTATTTACTTATTCATTTTTTTTTTTAGTGAAAATGAGCAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTACTTATTCATTTTTTTTTTTAGTGAAAATGAGCAGAAGA  400

seq1  GACACTGTGGTACAGTAATTTGGCTAGAAAAGATGCCTGGCAAATATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTGGTACAGTAATTTGGCTAGAAAAGATGCCTGGCAAATATGAT  450

seq1  AAAATCCAAGCCATATGAAAGACATAGACACATGGGTCTCCTATGTCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAGCCATATGAAAGACATAGACACATGGGTCTCCTATGTCGAA  500

seq1  AGACATAGACATGGGGTAAGAGAATCCAGTGAAGCTGGGCATAGACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGACATGGGGTAAGAGAATCCAGTGAAGCTGGGCATAGACAAGG  550

seq1  CAATGGGCTGGGGCAGACCACAGTAGTACTTCTACAGGAACAAGTCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCTGGGGCAGACCACAGTAGTACTTCTACAGGAACAAGTCTTGC  600

seq1  AGATCCCCTAAAGGAGAACTAGTAAACAAGTAACATTTTATTATCTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCCTAAAGGAGAACTAGTAAACAAGTAACATTTTATTATCTCAAA  650

seq1  TTCCTCTTGGCTAAAGTCTTTAAAATGTCCAAGTGATGCTCAACAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGGCTAAAGTCTTTAAAATGTCCAAGTGATGCTCAACAGAAAT  700

seq1  TAGAGAAAGTACAAATTAACGTTCATCCCAGCACAGGTGGGAAGGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTACAAATTAACGTTCATCCCAGCACAGGTGGGAAGGGCTGG  750

seq1  ACCCTTGAGAGATACAGTCACTGTGGGACGCCCTGAAGAACTGTAGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAGAGATACAGTCACTGTGGGACGCCCTGAAGAACTGTAGGAAC  800

seq1  CTCAGGCCCTGGTTCTCACTCTCTGTTTTCCAGCTATCAAATACAGAACA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-GCCCTGGTTCTCACTCTCTGTTTTCCAGCTATCAAATACAGAACA  849

seq1  GTTTTCTATCCCATTCACTCCCCACCTCAGCATTCTGCCCCGAGCTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATCCCATTCACTCCCCACCTCAGCATTCTGCCCCGAGCTCCCA  899

seq1  AAACATCAAAACAACCGAGAACGGACTGATGCGTGAGACAAAGGGAAACC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATC-AAACAACCGAGAACGGACTGATGCGTGAGACAAAGGGAAACC  948

seq1  TGGGAAATATGAGCCCAAACTAACTTTGTCTTCTGCTGAAATAATCGTCT  1000
      ||||||||||||||||||||||   ||||| ||||||||||| |||||||
seq2  TGGGAAATATGAGCCCAAACTA--CTTGTC-TCTGCTGAAAT-ATCGTCT  994

seq1  AAAGTATTTTGTTAGTGATTTTTAAAAAATTAAATAAAAATAAACCATGA  1050
      ||||||||||||||||||||||  ||||||  ||||||||||||||||||
seq2  AAAGTATTTTGTTAGTGATTTT--AAAAAT--AATAAAAATAAACCATGA  1040

seq1  TTGACACAATGGTTAATAAATGATTGGACTTAATTGCGACAATCTATC-T  1099
       |||||| |||||  || ||||||||||||||| |||||| ||||||| |
seq2  -TGACAC-ATGGT--AT-AATGATTGGACTTAA-TGCGAC-ATCTATCTT  1083

seq1  CTGTAGCAAAGCCAGC  1115
      ||||||| ||||||||
seq2  CTGTAGC-AAGCCAGC  1098


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