BAC Information

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BAC

Clone NameB6Ng01-320I20
Chromosome9 (Build37)
Map Location 27,316,831 - 27,484,634
singlet/doubletdoublet
Overlap geneLOC666440, LOC100041202
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
Downstream geneOpcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320I20.bB6Ng01-320I20.g
ACCGA109891GA109892
length2221,052
definitionB6Ng01-320I20.b B6Ng01-320I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,316,831 - 27,317,052)(27,483,577 - 27,484,634)
sequence
tgtttaagactgaaaacctcgaagttccatctgtaacaagactcgaaata
attacagctgatgattgcctagtactctcagccagaaaaaacagaacagc
ttttggccgccagcaattacaagcggcaccggctttagcagagacagaac
ttttaaatgaatacatgaatacattgctgaagatcagaaggcaagagagt
gaagaggtgggggtgggggggg
gaattccagaaccaagacgtgggagtagaggctggagcatggggtttttc
tattagtaactgacttgcctgggcttgcctggacttgcccagttcttagg
cctagtctcccaacctgccaatttgaagcctgtcatggagtcagcctacc
cttctcacagtgatttacacattgtaaggtggtttgtatatgcttggccc
aaggaggtgtgtccttggagtaggtgtggccttgttggaggaagtatgtc
actgttggggtaggctttgagaccttcctcgtagccacatgggagtcagt
ctttttctgtttgacttctgaaaaagctgtagaactctcagctcctctag
ccccatgtctatctggatgctcaaaccttaatgattatggtctgaacctc
tgaacctgtaagccagccccaattaaatgttgttcttataagagttgcct
tggtcacggtgtctgttctcatcaatgaaaatcctaactaacgcagaggg
attagctgatctctccattttcttggttcagtccaatttgcagtctcagg
caatatgtttttactgatttcctgagtgtaaagaaataaatcatagtagt
atgttcttttcaagaggatctcccctttcctatgggaggtagtaagctga
gagaataccagaatacctctgagaaaggattacaaatctctgtctactta
tggttaatttttagtgaacccaactgaaagaatggggattttttttaaac
cagatgccatccacaccagtacagtttaaactccaagtcttgtcttcttg
ttatcaaaccatctaagtctgtttgtttgtcaagactttctgctaaattc
ctcaaatttctgtcttggcaagctcagactgacaaacttatggaacaaga
atggacacatttcaggatatattctctaatatttcctttctccagggaga
gatcctagaatttccatattttattttgcaccttagcaccagagatggcc
atacctctctgcttacttggtgcatactagcaataacccttctggggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27316831_27317052
seq2: B6Ng01-320I20.b_52_273

seq1  TGTTTAAGACTGAAAACCTCGAAGTTCCATCTGTAACAAGACTCGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGACTGAAAACCTCGAAGTTCCATCTGTAACAAGACTCGAAATA  50

seq1  ATTACAGCTGATGATTGCCTAGTACTCTCAGCCAGAAAAAACAGAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCTGATGATTGCCTAGTACTCTCAGCCAGAAAAAACAGAACAGC  100

seq1  TTTTGGCCGCCAGCAATTACAAGCGGCACCGGCTTTAGCAGAGACAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCGCCAGCAATTACAAGCGGCACCGGCTTTAGCAGAGACAGAAC  150

seq1  TTTTAAATGAATACATGAATACATTGCTGAAGATCAGAAGGCAAGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGAATACATGAATACATTGCTGAAGATCAGAAGGCAAGAGAGT  200

seq1  GAAGAGGTGGGGGTGGGGGGGG  222
      ||||||||||||||||||||||
seq2  GAAGAGGTGGGGGTGGGGGGGG  222

seq1: chr9_27483577_27484634
seq2: B6Ng01-320I20.g_66_1117 (reverse)

seq1  CCCCCCCCCAGAA-GGTTATTGCTAGTATGCACCAAGTAAAGCAGAGAGG  49
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  CCCCCCCCCAGAAGGGTTATTGCTAGTATGCACCAAGT-AAGCAGAGAGG  49

seq1  TATTGGCCATCTTCTGGTGCTAAAGGTGCAAAATTAAATATTGGAAATTC  99
      || |||||||| ||||||||| |||||||||||| ||||| |||||||||
seq2  TA-TGGCCATC-TCTGGTGCT-AAGGTGCAAAATAAAATA-TGGAAATTC  95

seq1  TAGGATCTCTCCCTGGAGAAAGGAAATATTAGAGAATATATCCTGAAATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTCTCCCTGGAGAAAGGAAATATTAGAGAATATATCCTGAAATG  145

seq1  TGTCCATTTCTTGTTCCATAAGTTTGTCAGTCTGAGCTTGCCAAGACAGA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCA-TTCTTGTTCCATAAGTTTGTCAGTCTGAGCTTGCCAAGACAGA  194

seq1  AATTTGAGGAATTTAGCAGAAAGTCTTTGACAAACAAACAGACTTAGATG  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTTGAGGAATTTAGCAGAAAGTC-TTGACAAACAAACAGACTTAGATG  243

seq1  GTTTGATAACAAGAAGACAAGACTTGGAGTTTAAACTGTACTGGTGTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAACAAGAAGACAAGACTTGGAGTTTAAACTGTACTGGTGTGGA  293

seq1  TGGCATCTGGTTTAAAAAAAATCCCCATTCTTTCAGTTGGGTTCACTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGGTTTAAAAAAAATCCCCATTCTTTCAGTTGGGTTCACTAAA  343

seq1  AATTAACCATAAGTAGACAGAGATTTGTAATCCTTTCTCAGAGGTATTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACCATAAGTAGACAGAGATTTGTAATCCTTTCTCAGAGGTATTCT  393

seq1  GGTATTCTCTCAGCTTACTACCTCCCATAGGAAAGGGGAGATCCTCTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCTCTCAGCTTACTACCTCCCATAGGAAAGGGGAGATCCTCTTGA  443

seq1  AAAGAACATACTACTATGATTTATTTCTTTACACTCAGGAAATCAGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATACTACTATGATTTATTTCTTTACACTCAGGAAATCAGTAAA  493

seq1  AACATATTGCCTGAGACTGCAAATTGGACTGAACCAAGAAAATGGAGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTGCCTGAGACTGCAAATTGGACTGAACCAAGAAAATGGAGAGA  543

seq1  TCAGCTAATCCCTCTGCGTTAGTTAGGATTTTCATTGATGAGAACAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAATCCCTCTGCGTTAGTTAGGATTTTCATTGATGAGAACAGACA  593

seq1  CCGTGACCAAGGCAACTCTTATAAGAACAACATTTAATTGGGGCTGGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGACCAAGGCAACTCTTATAAGAACAACATTTAATTGGGGCTGGCTT  643

seq1  ACAGGTTCAGAGGTTCAGACCATAATCATTAAGGTTTGAGCATCCAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGGTTCAGACCATAATCATTAAGGTTTGAGCATCCAGATA  693

seq1  GACATGGGGCTAGAGGAGCTGAGAGTTCTACAGCTTTTTCAGAAGTCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGGCTAGAGGAGCTGAGAGTTCTACAGCTTTTTCAGAAGTCAAA  743

seq1  CAGAAAAAGACTGACTCCCATGTGGCTACGAGGAAGGTCTCAAAGCCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGACTGACTCCCATGTGGCTACGAGGAAGGTCTCAAAGCCTAC  793

seq1  CCCAACAGTGACATACTTCCTCCAACAAGGCCACACCTACTCCAAGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGTGACATACTTCCTCCAACAAGGCCACACCTACTCCAAGGACA  843

seq1  CACCTCCTTGGGCCAAGCATATACAAACCACCTTACAATGTGTAAATCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTTGGGCCAAGCATATACAAACCACCTTACAATGTGTAAATCAC  893

seq1  TGTGAGAAGGGTAGGCTGACTCCATGACAGGCTTCAAATTGGCAGGTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGGGTAGGCTGACTCCATGACAGGCTTCAAATTGGCAGGTTGG  943

seq1  GAGACTAGGCCTAAGAACTGGGCAAGTCCAGGCAAGCCCAGGCAAGTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGGCCTAAGAACTGGGCAAGTCCAGGCAAGCCCAGGCAAGTCAG  993

seq1  TTACTAATAGAAAAACCCCATGCTCCAGCCTCTACTCCCACGTCTTGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATAGAAAAACCCCATGCTCCAGCCTCTACTCCCACGTCTTGGTT  1043

seq1  CTGGAATTC  1058
      |||||||||
seq2  CTGGAATTC  1052