BAC Information

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BAC

Clone NameB6Ng01-320L19
Chromosome9 (Build37)
Map Location 43,528,022 - 43,684,362
singlet/doubletdoublet
Overlap genePvrl1, LOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320L19.bB6Ng01-320L19.g
ACCGA110031GA110032
length9571,130
definitionB6Ng01-320L19.b B6Ng01-320L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,683,419 - 43,684,362)(43,528,022 - 43,529,164)
sequence
gaattccttctgaagaatctattcttaaaaagatgaaaaggtcaggcatg
atggtggtcgctgcttacaatccagcacctgagagacacaggccaaagga
atcgctgcacttcccagccagccagggctacatagtaagaccctggctca
gaacagaaagactccgttgccttccatgtaaagtcaccaacataccaaag
agccatgcctgaaggcttcaccctctgagccttcaaataggcaatataga
gtgtatgttccaatacatgttaggagaaggactgttctcctctgagtaca
gtttcttttctttctttctttttctttttttttttttttttttttttttt
ttgggttttcgagacagggtttctctgtgtagccctggctatcctggaac
tcactctgtagaccaggctggcctcaaactcagaaatccacctgcctctg
cctcacaaatgctgggattaaaggtatgcgccaccacacccagcctgagt
acagtttctatctgctatattctggttctggagtgttcccgaaatctcag
atgttaaatccatcatccccagcttgacactattgatagatgatggaacc
tctaagaggtaggactaatagaaggcgttggctcactggagacttacctt
tcaaaggcattatggaaccttggcgcctatctttttctccctgctttgag
ttctagccacgtgccctactatgatataccaccttgatatagacccaaga
cagcaagatcccaaaccatggactggaaatcccccaaatcagcaacccaa
atccacctttttctctctgcaagttgattatcccagggttgcactgaagt
cctggaaagctgactcaaactccatttctcaggaggacagttgatgcctc
tgtaggggaaaatggagcctgcttccacctggggcttgggtgagaggggg
gggggtc
gaattccacaggccaaggaaaatacacacagactaggtatgcacatacat
gtgttcacgcatgtgtacaaatacatggacaatcacacacatggacatac
agatacacatatgtattcatgagcacacacacacacaaacacacacaggc
tgtgctgtgtaggtggtaccaggaacaagaaaagcaagtaaaaagccaag
agttgaactgctgtcagagtgagccaagaacagacttgtttgtgtctgtg
acagcaggctgtgacagcagaggacagagcatgcctgtgcatgtggacca
catgggtatgtgcctcaggaacctgtggctgcccctgcaggcagtagcct
acagtgtactctgacacttgtgagggtcagacacttgcagccagagtctc
cttcactggggacctaactcacagcccctgtcagtgactactcaacccag
ggtgctccttacccctcgacttcttcctccttaggcactaatatgaccat
ccccaactctgggacaagtctctctgttctgggggacagccatggcatcc
aatccagtacaataaccactaaaccaaatgcatgtcctgatcccatcagc
ctcatgtgactaaattcaaataataatatttgtatccctctcccctactc
ctccttctcttgttcctcttcttctccttcctcatccactccttctctcc
tctcctcctccttctttttaaaagatgaatagatattttttgtaggagat
taaatgagataatgagataaagaatgtgaagcccctggcattgcaccaac
tacaaagcaaacacttcctcttcggcctctaattcactctcccaggagta
aattggtcaaaactcccagggacttcccaagtcacaccacctgcctgaaa
ctggaggtgaccttagaagccatgtgttctaggtcccacctcaccaagtt
gtaaatgtagactctcattcctggagaggcctgtgcattgacactggagc
agagatcagcatacagactgctgcctcatctgagtcagtctagcatcggc
ttcagcagcaaagtcagagcaggagccttccaggtggctcctttggcctg
gaatgaagtgaactctgagatggcaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43683419_43684362
seq2: B6Ng01-320L19.b_48_1004 (reverse)

seq1  GA-CCCCCCCCCTCTCACCC-AGCCC--AGTTGAAGCAGGCTCCA-TTTC  45
      || ||||||||||||||||| |||||   || ||||||||||||| ||||
seq2  GACCCCCCCCCCTCTCACCCAAGCCCCAGGTGGAAGCAGGCTCCATTTTC  50

seq1  CCCT-CAGA-GCATC-ACTGT-CTCCT--GGAATGGAGTTTGAGTCAGCT  89
      |||| |||| ||||| ||||| |||||  | |||||||||||||||||||
seq2  CCCTACAGAGGCATCAACTGTCCTCCTGAGAAATGGAGTTTGAGTCAGCT  100

seq1  TTCCAGGACTTCAGTGCAACCCTGGGATAATCAACTTGCAGAGAG-AAAA  138
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCAGGACTTCAGTGCAACCCTGGGATAATCAACTTGCAGAGAGAAAAA  150

seq1  GGTGGATTTGGGTTGCTGATTTGGGGGATTT-CAGTCCATGGTTTGGGAT  187
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGGATTTGGGTTGCTGATTTGGGGGATTTCCAGTCCATGGTTTGGGAT  200

seq1  CTTGCTGTCTTGGGTCTATATCAAGGTGGTATATCATAGTAGGGCACGTG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCTTGGGTCTATATCAAGGTGGTATATCATAGTAGGGCACGTG  250

seq1  GCTAGAACTCAAAGCAGGGAGAAAAAGATAGGCGCCAAGGTTCCATAATG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACTCAAAGCAGGGAGAAAAAGATAGGCGCCAAGGTTCCATAATG  300

seq1  CCTTTGAAAGGTAAGTCTCCAGTGAGCCAACGCCTTCTATTAGTCCTACC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAAGGTAAGTCTCCAGTGAGCCAACGCCTTCTATTAGTCCTACC  350

seq1  TCTTAGAGGTTCCATCATCTATCAATAGTGTCAAGCTGGGGATGATGGAT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGGTTCCATCATCTATCAATAGTGTCAAGCTGGGGATGATGGAT  400

seq1  TTAACATCTGAGATTTCGGGAACACTCCAGAACCAGAATATAGCAGATAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCTGAGATTTCGGGAACACTCCAGAACCAGAATATAGCAGATAG  450

seq1  AAACTGTACTCAGGCTGGGTGTGGTGGCGCATACCTTTAATCCCAGCATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACTCAGGCTGGGTGTGGTGGCGCATACCTTTAATCCCAGCATT  500

seq1  TGTGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  550

seq1  AGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  600

seq1  AAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAGAAAGAA  637
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAGAAAGAA  650

seq1  AAGAAACTGTACTCAGAGGAGAACAGTCCTTCTCCTAACATGTATTGGAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGTACTCAGAGGAGAACAGTCCTTCTCCTAACATGTATTGGAA  700

seq1  CATACACTCTATATTGCCTATTTGAAGGCTCAGAGGGTGAAGCCTTCAGG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTCTATATTGCCTATTTGAAGGCTCAGAGGGTGAAGCCTTCAGG  750

seq1  CATGGCTCTTTGGTATGTTGGTGACTTTACATGGAAGGCAACGGAGTCTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCTTTGGTATGTTGGTGACTTTACATGGAAGGCAACGGAGTCTT  800

seq1  TCTGTTCTGAGCCAGGGTCTTACTATGTAGCCCTGGCTGGCTGGGAAGTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGAGCCAGGGTCTTACTATGTAGCCCTGGCTGGCTGGGAAGTG  850

seq1  CAGCGATTCCTTTGGCCTGTGTCTCTCAGGTGCTGGATTGTAAGCAGCGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATTCCTTTGGCCTGTGTCTCTCAGGTGCTGGATTGTAAGCAGCGA  900

seq1  CCACCATCATGCCTGACCTTTTCATCTTTTTAAGAATAGATTCTTCAGAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCATGCCTGACCTTTTCATCTTTTTAAGAATAGATTCTTCAGAA  950

seq1  GGAATTC  944
      |||||||
seq2  GGAATTC  957

seq1: chr9_43528022_43529164
seq2: B6Ng01-320L19.g_67_1196

seq1  GAATTCCACAGGCCAAGGAAAATACACACAGACTAGGTATGCACATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCCAAGGAAAATACACACAGACTAGGTATGCACATACAT  50

seq1  GTGTTCACGCATGTGTACAAATACATGGACAATCACACACATGGACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACGCATGTGTACAAATACATGGACAATCACACACATGGACATAC  100

seq1  AGATACACATATGTATTCATGAGCACACACACACACAAACACACACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACATATGTATTCATGAGCACACACACACACAAACACACACAGGC  150

seq1  TGTGCTGTGTAGGTGGTACCAGGAACAAGAAAAGCAAGTAAAAAGCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGTAGGTGGTACCAGGAACAAGAAAAGCAAGTAAAAAGCCAAG  200

seq1  AGTTGAACTGCTGTCAGAGTGAGCCAAGAACAGACTTGTTTGTGTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACTGCTGTCAGAGTGAGCCAAGAACAGACTTGTTTGTGTCTGTG  250

seq1  ACAGCAGGCTGTGACAGCAGAGGACAGAGCATGCCTGTGCATGTGGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGCTGTGACAGCAGAGGACAGAGCATGCCTGTGCATGTGGACCA  300

seq1  CATGGGTATGTGCCTCAGGAACCTGTGGCTGCCCCTGCAGGCAGTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTATGTGCCTCAGGAACCTGTGGCTGCCCCTGCAGGCAGTAGCCT  350

seq1  ACAGTGTACTCTGACACTTGTGAGGGTCAGACACTTGCAGCCAGAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTCTGACACTTGTGAGGGTCAGACACTTGCAGCCAGAGTCTC  400

seq1  CTTCACTGGGGACCTAACTCACAGCCCCTGTCAGTGACTACTCAACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGGGGACCTAACTCACAGCCCCTGTCAGTGACTACTCAACCCAG  450

seq1  GGTGCTCCTTACCCCTCGACTTCTTCCTCCTTAGGCACTAATATGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCCTTACCCCTCGACTTCTTCCTCCTTAGGCACTAATATGACCAT  500

seq1  CCCCAACTCTGGGACAAGTCTCTCTGTTCTGGGGGACAGCCATGGCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCTGGGACAAGTCTCTCTGTTCTGGGGGACAGCCATGGCATCC  550

seq1  AATCCAGTACAATAACCACTAAACCAAATGCATGTCCTGATCCCATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTACAATAACCACTAAACCAAATGCATGTCCTGATCCCATCAGC  600

seq1  CTCATGTGACTAAATTCAAATAATAATATTTGTATCCCTCTCCCCTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGACTAAATTCAAATAATAATATTTGTATCCCTCTCCCCTACTC  650

seq1  CTCCTTCTCTTGTTCCTCTTCTTCTCCTTCCTCATCCACTCCTTCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCTTGTTCCTCTTCTTCTCCTTCCTCATCCACTCCTTCTCTCC  700

seq1  TCTCCTCCTCCTTCTTTTTAAAAGATGAATAGATATTTTTTGTAGGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTCCTTCTTTTTAAAAGATGAATAGATATTTTTTGTAGGAGAT  750

seq1  TAAATGAGATAATGAGATAAAGAATGTGAAGCCCCTGGCATTGCACCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGATAATGAGATAAAGAATGTGAAGCCCCTGGCATTGCACCAAC  800

seq1  TACAAAGCAAACACTTCCTCTTCGGCCTCTAATTCACTCTCCCAGGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCAAACACTTCCTCTTCGGCCTCTAATTCACTCTCCCAGGAGTA  850

seq1  AATTGGTCAAAACTCCCAGGGACTTCCCAAGTCACACCACCTGCCTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCAAAACTCCCAGGGACTTCCCAAGTCACACCACCTGCCTGAAA  900

seq1  CTGGAGGTGACCTTAGAAGCCATGTGTTCTAGGTCCCACCTCACCAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTGACCTTAGAAGCCATGTGTTCTAGGTCCCACCTCACCAAGTT  950

seq1  GTAAATGTAGACTCTCATTCCTGGAGAGGCCTGTGCATTGACACTGGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTAGACTCTCATTCCTGGAGAGGCCTGTGCATTGACACTGGAGC  1000

seq1  AGAGATCAGCATACAGACTGCTGCCTCATCTTGAGGTCAGTCTTAGCATT  1050
      |||||||||||||||||||||||||||||| ||| ||||||| ||||| |
seq2  AGAGATCAGCATACAGACTGCTGCCTCATC-TGA-GTCAGTC-TAGCA-T  1046

seq1  CGGCCTTCAGCCAGCAAAAGGTCAGAGCAGGGAGCTTCCAAGGTTGGCTC  1100
      ||| |||||| |||||||  |||||||||||   ||||||  | ||||| 
seq2  CGG-CTTCAG-CAGCAAA--GTCAGAGCAGGAGCCTTCCA--GGTGGCT-  1089

seq1  CCTTTGGCTTGGAGATGACAGTGAACTCTGGAGATGG-AAGTGA  1143
      |||||||| |||| |||| |||||||||| ||||||| ||||||
seq2  CCTTTGGCCTGGA-ATGA-AGTGAACTCT-GAGATGGCAAGTGA  1130