BAC Information

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BAC

Clone NameB6Ng01-321H04
Chromosome14 (Build37)9 (Build37)
Map Location 92,880,726 - 92,881,88440,612,644 - 40,613,285
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321H04.bB6Ng01-321H04.g
ACCGA110550GA110551
length1,1501,000
definitionB6Ng01-321H04.b B6Ng01-321H04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,880,726 - 92,881,884)(40,612,644 - 40,613,285)
sequence
gaattcatttcttattgctccatgatgaattgccatgtatagaatagctt
aaaagaagaccgtttctttatgctatttcctacattagaaatcctaaagg
ttccagtgactatagcaaagttgtagcagggattataggcttatctaagg
ttcttggtcactgtagaaagctaattatttgaaaaagaatctatgttttt
tttttttcagtttcagattcccatttactttcatggtcatctagccattt
ctcctgtccttccccacatctgatcctgaaccctccattctcttccccat
ccccctccctcccagttctctctacctcttatggctattttatttccctt
tctaagtgagattcaacctttatcacttgggccttccttcttggttagat
tctttgggtctgtggagtataataacatggtacctatgttttatggttaa
tattcacctataagtgagcacatactatgcttgttcttttgagactgtgt
tacctcattcacgatgatattcttaagttacatccatttgcatgagaatc
tatgttttttaaatatactaaacagaaagtctatccaaggccaagtagag
attttctttgaaaaatattcaccatttaaacatcttagttggcaatataa
gcaccacacaaggcaggtttccttttgaatatttacaactcaaccaatta
gtaacctcatcttgacagatagtcccattttatataatgggtatgaatat
tataggatccagtccaaagagttggtagaaatgctttagtctgtcttaga
atctttcttacatagcttaagaaaggggtatggagaacatccatatttgt
tacttattttggaaatgtatatgtagcagataagtgtaattttatttaat
gactttaaacattaaaataatcttatttaatgaagtgcagcccacaggcc
aaagctttggcatcttctccattcccgtaatcagattctctgaatgttgt
tacttggctcagcaaatcagcaaaagcaggtgcatcagtattagatagag
ggcttagaaactcagtggagatctacacgcagaatgagaacaactcactt
ctgcagcagccagaacaatatcttcatctggaaacagctactgacagtga


gaattcactggagtcctatgccttcaacatgaaagcaactgtggaagatg
agaaacttcaaggcaagatcaatgataaagacaagcagattcttgacaag
tgcaatgaaatcatcagctggctggataagaaccagactgcagagaagga
agaatttgagcatcagcagaaagaactggagaaagtctgcaaccctatca
ttaccaagctgtaccagagtgctggtgctggtggcatgcctgggggaatg
cctggtggcttcccaggtggaggagctcccccatctggtggtgcttcttc
aggccccacaattgaagaggtggattaagtcagtccaagaagagggtgta
gcattgttccacagggacccaaaacaagtaacatggaataataaaactac
ttaaattgttaccatatatatatatatatatatctgtattatccccttac
tagatataatcttgttatagccatacaatcttttttttttccatttttta
ttaggtatttaactcatttacatttccaatgctataccaaaagtccccca
tatccacccacccccactcccccgcccacccactccccctttttggccct
ggtgttcccctgtactggggcatataaagtttgcaagtccaaatgggcct
ctctttccagtgatggccgactaggccatcttttgatatatatgcagcta
gagtcaagagctccggggtactggttagctcataatgttgttccacctat
agggttgcagatccctttagctccttggctactttctctagctcctccat
tgggagccctatgatccatccattagctgactgtgagcatccacttctgt
gtttgctgggccccgggcatagtctcacaagagacagctacatctgcgtc
ctttcaataaatcttgctagtctatgcaatggtgtcagcgtttggatgct
gattatgggggtggatccctggatatggcagtcctctacatggtccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92880726_92881884
seq2: B6Ng01-321H04.b_51_1200

seq1  GAATTCATTTCTTATTGCTCCATGATGAATTGCCATGTATAGAATAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTATTGCTCCATGATGAATTGCCATGTATAGAATAGCTT  50

seq1  AAAAGAAGACCGTTTCTTTATGCTATTTCCTACATTAGAAATCCTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGACCGTTTCTTTATGCTATTTCCTACATTAGAAATCCTAAAGG  100

seq1  TTCCAGTGACTATAGCAAAGTTGTAGCAGGGATTATAGGCTTATCTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGACTATAGCAAAGTTGTAGCAGGGATTATAGGCTTATCTAAGG  150

seq1  TTCTTGGTCACTGTAGAAAGCTAATTATTTGAAAAAGAATCTATGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCACTGTAGAAAGCTAATTATTTGAAAAAGAATCTATGTTTTT  200

seq1  TTTTTTTCAGTTTCAGATTCCCATTTACTTTCATGGTCATCTAGCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGTTTCAGATTCCCATTTACTTTCATGGTCATCTAGCCATTT  250

seq1  CTCCTGTCCTTCCCCACATCTGATCCTGAACCCTCCATTCTCTTCCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCTTCCCCACATCTGATCCTGAACCCTCCATTCTCTTCCCCAT  300

seq1  CCCCCTCCCTCCCAGTTCTCTCTACCTCTTATGGCTATTTTATTTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCTCCCAGTTCTCTCTACCTCTTATGGCTATTTTATTTCCCTT  350

seq1  TCTAAGTGAGATTCAACCTTTATCACTTGGGCCTTCCTTCTTGGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGAGATTCAACCTTTATCACTTGGGCCTTCCTTCTTGGTTAGAT  400

seq1  TCTTTGGGTCTGTGGAGTATAATAACATGGTACCTATGTTTTATGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGTCTGTGGAGTATAATAACATGGTACCTATGTTTTATGGTTAA  450

seq1  TATTCACCTATAAGTGAGCACATACTATGCTTGTTCTTTTGAGACTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACCTATAAGTGAGCACATACTATGCTTGTTCTTTTGAGACTGTGT  500

seq1  TACCTCATTCACGATGATATTCTTAAGTTACATCCATTTGCATGAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATTCACGATGATATTCTTAAGTTACATCCATTTGCATGAGAATC  550

seq1  TATGTTTTTTAAATATACTAAACAGAAAGTCTATCCAAGGCCAAGTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTTAAATATACTAAACAGAAAGTCTATCCAAGGCCAAGTAGAG  600

seq1  ATTTTCTTTGAAAAATATTCACCATTTAAACATCTTAGTTGGCAATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGAAAAATATTCACCATTTAAACATCTTAGTTGGCAATATAA  650

seq1  GCACCACACAAGGCAGGTTTCCTTTTGAATATTTACAACTCAACCAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACACAAGGCAGGTTTCCTTTTGAATATTTACAACTCAACCAATTA  700

seq1  GTAACCTCATCTTGACAGATAGTCCCATTTTATATAATGGGTATGAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCATCTTGACAGATAGTCCCATTTTATATAATGGGTATGAATAT  750

seq1  TATAGGATCCAGTCCAAAGAGTTGGTAGAAATGCTTTAGTCTGTCTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATCCAGTCCAAAGAGTTGGTAGAAATGCTTTAGTCTGTCTTAGA  800

seq1  ATCTTTCTTACATAGCTTAAGAAAGGGGTATGGAGAACATCCATATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTACATAGCTTAAGAAAGGGGTATGGAGAACATCCATATTTGT  850

seq1  TACTTATTTTGGAAATGTATATGTAGCAGATAAGTGTAATTTTATTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTGGAAATGTATATGTAGCAGATAAGTGTAATTTTATTTAAT  900

seq1  GACTTTAAACATTAAAAATAATCTTATTTAATGAAGTGCAGCCCACAGGC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAACATT-AAAATAATCTTATTTAATGAAGTGCAGCCCACAGGC  949

seq1  CAAAGCTTTGGCATCTTCTCCATTCCCGTAATCAGAATTCTCTGAATGTT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAAGCTTTGGCATCTTCTCCATTCCCGTAATCAG-ATTCTCTGAATGTT  998

seq1  GTTACTTGGCTCAGCAAATCAGCAAAAGCAGGTGCATCAGTATTAGATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGGCTCAGCAAATCAGCAAAAGCAGGTGCATCAGTATTAGATAG  1048

seq1  AGGGCTTAGAAAACTCCAGTTGGAGATCTACAACGCAG-ATGAGAAACAA  1099
      ||||||||| ||||| ||| ||||||||||| |||||| |||||||   |
seq2  AGGGCTTAG-AAACT-CAG-TGGAGATCTAC-ACGCAGAATGAGAA--CA  1092

seq1  ACTCACTTCTGCAGCAG-CAG-ACAATAATCTTTCATCTGAAAAACAGCT  1147
      ||||||||||||||||| ||| ||||| ||| ||||||||  ||||||||
seq2  ACTCACTTCTGCAGCAGCCAGAACAAT-ATC-TTCATCTG-GAAACAGCT  1139

seq1  ACTGACAAGTGA  1159
      |||||| |||||
seq2  ACTGAC-AGTGA  1150


seq1: chr9_40612644_40613285
seq2: B6Ng01-321H04.g_72_483

seq1  TCACTGGAGTCCTATGCCTTCAACATGAAAGCAACTGTGGAAGATGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAGTCCTATGCCTTCAACATGAAAGCAACTGTGGAAGATGAGAA  50

seq1  ACTTCAAGGCAAGATCAATGATGAGGACAAACAGAAGATTCTTGACAAGT  100
      |||||||||||||||||||||| | ||||   || |||||||||||||||
seq2  ACTTCAAGGCAAGATCAATGATAAAGACA---AGCAGATTCTTGACAAGT  97

seq1  GCAATGAAATCATCAGCTGGCTGGATAAGAACCAGGTATGTGTTTTGCCA  150
      ||||||||||||||||||||||||||||||||                  
seq2  GCAATGAAATCATCAGCTGGCTGGATAAGAAC------------------  129

seq1  ATAAGTAGATGTTCATTCAGAAAAGGGCTGAGAGGGGTCACAATGATGAT  200
                                                        
seq2  --------------------------------------------------  129

seq1  GAATGGTCCAAACATTCGCGGTTTCCACCAGAACGCAAGGCAGTGTTGGC  250
                                                        
seq2  --------------------------------------------------  129

seq1  AGTTACCTTCCTTGGATGTCTGAGTGACTCAATAGCTAAGGGTTCTTTAG  300
                                                        
seq2  --------------------------------------------------  129

seq1  GCTTAGTTGTCAGTCTCCTCCCCCCAAAGTAATTGGAGATCTTTTAATAA  350
                                                        
seq2  --------------------------------------------------  129

seq1  ATTTGATTTCTTTTTTCTCAGACTGCAGAGAAGGAAGAATTTGAGCATCA  400
                        ||||||||||||||||||||||||||||||||
seq2  ------------------CAGACTGCAGAGAAGGAAGAATTTGAGCATCA  161

seq1  GCAGAAAGAACTGGAGAAAGTCTGCAACCCTATCATTACCAAGCTGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGAACTGGAGAAAGTCTGCAACCCTATCATTACCAAGCTGTACC  211

seq1  AGA------GTGCAGGTGGCATGCCTGGGGGAATGCCTGGTGGCTTCCCA  494
      |||      |||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTGGTGCTGGTGGCATGCCTGGGGGAATGCCTGGTGGCTTCCCA  261

seq1  GGTGGAGGAGCTCCCCCATCTGGTGGTGCTTCTTCAGGCCCCACCATTGA  544
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTGGAGGAGCTCCCCCATCTGGTGGTGCTTCTTCAGGCCCCACAATTGA  311

seq1  AGAGGTGGATTAAGTCAGTCCAAGAA---GGTGTAGCTTTGTTCCACAGG  591
      ||||||||||||||||||||||||||   |||||||| ||||||||||||
seq2  AGAGGTGGATTAAGTCAGTCCAAGAAGAGGGTGTAGCATTGTTCCACAGG  361

seq1  GACCCAAAACAAGTAACATGGAATAATAAAACTATTTAAATTGGCACCAT  641
      |||||||||||||||||||||||||||||||||| ||||||||  |||||
seq2  GACCCAAAACAAGTAACATGGAATAATAAAACTACTTAAATTGTTACCAT  411

seq1  A  642
      |
seq2  A  412


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