BAC Information

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BAC

Clone NameB6Ng01-321J20
Chromosome9 (Build37)
Map Location 104,571,026 - 104,572,206
singlet/doubletsinglet
Overlap geneCpne4
Upstream geneTmem108, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
Downstream geneMrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J20.bB6Ng01-321J20.g
ACCGA110672GA110673
length6851,164
definitionB6Ng01-321J20.b B6Ng01-321J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctattttggtatgataatatgccttaggctgagttgtttgctt
ttctttccttttcttcccatctgttcccgtctcttttcttcattgtttga
ggccatcggtctttttctgtctgtgccctctgtgattatgttctcatata
tttgtaattgttttcagctgtgtctattatactcagatgttccaccgtgg
gatgttatggttggtgactgattttcttgtatttgcaatctccattttca
tctcagcctctccctttaccatcttgtttgtggtcttgttgatgttctct
gtaaacctacagaaaccagatgcacagtgtccttactacctggggaattt
tcttctatgttatgtttttgtgaagtttggggttatttataactttgacc
ttttggctctcctttagcactctcatttggttgaggtatattcttgtgat
aacacatcatttccttctgattttgtttatgagcaccatggacagacaac
cgaaattcccatttgtcctaacagtatagatagattctgcttgagtatcc
actctgtcagtgagttcttttttttctcttctgagctgctgggtacatgt
gttttgtgtgtttctgtatttgcacatgtgtgtgtgtgtgtttatgtgct
cacatatgtatgagatggtgtggtgtgtgtgtgca
gaattcacagggattagaacctagatgggacaggtcatacacaaaggact
aggaacaatactgaaatgaatctccttggaccttaatctccaatgggtgg
tgatgtttctgccaaaagtttcaaaatctaggagcttgttttgtgggaaa
aaaaatgcttttgctcattttatatgagttggtacttcatataaaatcct
gctaacacacctaagatcctgacattaaggcaggtggatcttgggagctt
ggcggaatgagctgtcaattcagtgagagatcttgactcaaaaagcaaga
gagagaaatgattgaggaaaaattctatgtaaatttttgacctccaaact
caaccatatgactgagttatataccagcacatacacacacacacacacac
atgtatataaaccagagagagagagacagagagagacagagagagagagt
gacagagagagacagagagttcaaaatggcggaacattgggttcatgtca
aatagacttattaggacagttatgaagtaaaatagagatttggatttatg
tataaatattgtgagaagagaacctggttcttcagtgtaagagaaagggt
gaggttaaaggcagaacatgtcagaagccagcatcatgcccatctcagtg
acccctcaagtaagtgcccgctctcctgaaaacatggccaatgtttacag
aagaggaaagtcacagatgaaggaagggatgtgtgctcatcagtgagtat
gcacaggtatgtgacatcctgtgtacaagagtgtcaacttggtgagatga
actgccatggaacaatgtcagacacgcacagtgagtggaggcatttagca
ggaaggaacggcaaaggaaaaacagcatttggcatggagaaattttagaa
gctcgtgacagcagaaacaagtgttggctgaatcaagtctgtgtccctgc
acatgatttactgtgatacacaagaagaagaaatttagccatgtcatagc
ggggtagctgaaaattctatggctttcttattgttcatcaaatatgaaag
aatcagatgacacgaaatcccatgctgttcagtgtgggcgcaaccgacta
gagaacaatggagattgatagcccacgcaacgggacttcaaactgtcctg
tttcgaatgcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_104571026_104572206
seq2: B6Ng01-321J20.g_66_1229 (reverse)

seq1  GCAAGCATCTGGAAACAGGACAGTTTTGATGTCACTGTTGCCGTTGGCTT  50
      |||||||| | |||||||||||| ||||| ||| | |||| ||| ||| |
seq2  GCAAGCAT-TCGAAACAGGACAG-TTTGAAGTC-CCGTTG-CGTGGGC-T  45

seq1  ATTCATCTACCATTTGTTCCTCTAGTCTGTTTGCGCCCACACTGGACACC  100
      ||  |||| ||| ||||| |||||||| | |||||||||||||| ||| |
seq2  ATCAATCT-CCA-TTGTT-CTCTAGTC-GGTTGCGCCCACACTGAACAGC  91

seq1  ATGGGATTTCGTGTTCATTCTTGAATTCTTTTCATATTTGATGAACAAT-  149
      ||||||||||||| ||| |||   |||| |||||||||||||||||||| 
seq2  ATGGGATTTCGTG-TCA-TCT--GATTC-TTTCATATTTGATGAACAATA  136

seq1  AGAAAGCCATAGAATTTTCAGCTACCCCGCTATGACATTGGCTAAATTTC  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAGCCATAGAATTTTCAGCTACCCCGCTATGACA-TGGCTAAATTTC  185

seq1  TTCCTTCTTTGTTGTATCACAGTAAATCATGTGCAGGGACACAGACTTGA  249
      || ||||||   ||||||||||||||||||||||||||||||||||||||
seq2  TT-CTTCTT--GTGTATCACAGTAAATCATGTGCAGGGACACAGACTTGA  232

seq1  TTCAGCCAACACTTGTTTCTGCTGTCACGAGCTTCTAAAATTTCTCCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAACACTTGTTTCTGCTGTCACGAGCTTCTAAAATTTCTCCATG  282

seq1  CCAAATGCTGTTTTTCCTTTGCCGTTCCTTCCTGCTAAATGCCTCCACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTGTTTTTCCTTTGCCGTTCCTTCCTGCTAAATGCCTCCACTC  332

seq1  ACTGTGCGTGTCTGACATTGTTCCATGGCAGTTCATCTCACCAAGTTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCGTGTCTGACATTGTTCCATGGCAGTTCATCTCACCAAGTTGAC  382

seq1  ACTCTTGTACACAGGATGTCACATACCTGTGCATACTCACTGATGAGCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTACACAGGATGTCACATACCTGTGCATACTCACTGATGAGCAC  432

seq1  ACATCCCTTCCTTCATCTGTGACTTTCCTCTTCTGTAAACATTGGCCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTTCCTTCATCTGTGACTTTCCTCTTCTGTAAACATTGGCCATG  482

seq1  TTTTCAGGAGAGCGGGCACTTACTTGAGGGGTCACTGAGATGGGCATGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAGAGCGGGCACTTACTTGAGGGGTCACTGAGATGGGCATGAT  532

seq1  GCTGGCTTCTGACATGTTCTGCCTTTAACCTCACCCTTTCTCTTACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCTGACATGTTCTGCCTTTAACCTCACCCTTTCTCTTACACTG  582

seq1  AAGAACCAGGTTCTCTTCTCACAATATTTATACATAAATCCAAATCTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGGTTCTCTTCTCACAATATTTATACATAAATCCAAATCTCTA  632

seq1  TTTTACTTCATAACTGTCCTAATAAGTCTATTTGACATGAACCCAATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCATAACTGTCCTAATAAGTCTATTTGACATGAACCCAATGTT  682

seq1  CCGCCATTTTGAACTCTCTGTCTCTCTCTGTCACTCTCTCTCTCTGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATTTTGAACTCTCTGTCTCTCTCTGTCACTCTCTCTCTCTGTCTC  732

seq1  TCTCTGTCTCTCTCTCTCTGGTTTATATACATGTGTGTGTGTGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTCTCTGGTTTATATACATGTGTGTGTGTGTGTGTGT  782

seq1  ATGTGCTGGTATATAACTCAGTCATATGGTTGAGTTTGGAGGTCAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGTATATAACTCAGTCATATGGTTGAGTTTGGAGGTCAAAAAT  832

seq1  TTACATAGAATTTTTCCTCAATCATTTCTCTCTCTTGCTTTTTGAGTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGAATTTTTCCTCAATCATTTCTCTCTCTTGCTTTTTGAGTCAA  882

seq1  GATCTCTCACTGAATTGACAGCTCATTCCGCCAAGCTCCCAAGATCCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCACTGAATTGACAGCTCATTCCGCCAAGCTCCCAAGATCCACC  932

seq1  TGCCTTAATGTCAGGATCTTAGGTGTGTTAGCAGGATTTTATATGAAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAATGTCAGGATCTTAGGTGTGTTAGCAGGATTTTATATGAAGTA  982

seq1  CCAACTCATATAAAATGAGCAAAAGCATTTTTTTTCCCACAAAACAAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATATAAAATGAGCAAAAGCATTTTTTTTCCCACAAAACAAGCT  1032

seq1  CCTAGATTTTGAAACTTTTGGCAGAAACATCACCACCCATTGGAGATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTTTGAAACTTTTGGCAGAAACATCACCACCCATTGGAGATTAA  1082

seq1  GGTCCAAGGAGATTCATTTCAGTATTGTTCCTAGTCCTTTGTGTATGACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGGAGATTCATTTCAGTATTGTTCCTAGTCCTTTGTGTATGACC  1132

seq1  TGTCCCATCTAGGTTCTAATCCCTGTGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  TGTCCCATCTAGGTTCTAATCCCTGTGAATTC  1164