MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-322F24
Chromosome	9 (Build37)
Map Location	8,497,396 - 8,655,973
singlet/doublet	doublet
Overlap gene	Trpc6
Upstream gene	Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream gene	Pgr, 9030420J04Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mmp10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17384 MGI:97007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmp8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17394 MGI:1202395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmp27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234911 MGI:3039232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmp20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30800 MGI:1353466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17393 MGI:103189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665057 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 343 ESTs, 9 Proteins pseudo : _no_value

name	LOC100039782 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 980 ESTs, 5 Proteins

name	Tmem123 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71929 MGI:1919179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Birc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11797 MGI:1197009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Birc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11796 MGI:1197007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22601 MGI:103262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665090 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665090 MGI:3647003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	9230110C19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234912 MGI:3045346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AK129341 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234915 MGI:2680221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039855 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039855
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	1700018P22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69395 MGI:1916645
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC665108 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665108
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	1700128F08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76669 MGI:1923919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Trpc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22068 MGI:109523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pgr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18667 MGI:97567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030420J04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71544 MGI:1918794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins

name	Mmp10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130723 GeneID:17384 MGI:97007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 10 transcript_id : NM_019471.2

name	Mmp8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801809 GeneID:17394 MGI:1202395
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 8 transcript_id : NM_008611.3

name	Mmp27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71892409 GeneID:234911 MGI:3039232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 27 transcript_id : NM_001030289.1

name	Mmp20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130938 GeneID:30800 MGI:1353466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 20 (enamelysin) transcript_id : NM_013903.2

name	Mmp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227218 GeneID:17393 MGI:103189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix metallopeptidase 7 transcript_id : NM_010810.3

name	LOC100039782 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259453 GeneID:100039782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 980 ESTs, 5 Proteins product : similar to ribosomal protein transcript_id : XM_001473311.1

name	Tmem123 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526937 GeneID:71929 MGI:1919179
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 123 transcript_id : NM_133739.1

name	Birc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680697 GeneID:11797 MGI:1197009
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : baculoviral IAP repeat-containing 2 transcript_id : NM_007465.1

name	Birc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803312 GeneID:11796 MGI:1197007
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : baculoviral IAP repeat-containing 3 transcript_id : NM_007464.2

name	Yap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130327 GeneID:22601 MGI:103262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : yes-associated protein 1 transcript_id : NM_009534.2

name	EG665090 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94385573 GeneID:665090 MGI:3647003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG665090 transcript_id : XM_974531.1

name	9230110C19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802300 GeneID:234912 MGI:3045346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9230110C19 gene transcript_id : NM_199017.2

name	AK129341 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113866018 GeneID:234915 MGI:2680221
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence AK129341 transcript_id : NM_001045524.1

name	LOC100039855 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259455 GeneID:100039855
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100039855 transcript_id : XM_001473651.1

name	1700018P22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259443 GeneID:69395 MGI:1916645
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 1700018P22 gene transcript_id : XM_001472999.1

name	Trpc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305596 GeneID:22068 MGI:109523
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 6 transcript_id : NM_013838.1

name	Pgr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363097 GeneID:18667 MGI:97567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progesterone receptor transcript_id : NM_008829.2

name	9030420J04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94385576 GeneID:71544 MGI:1918794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 49 ESTs, 4 Proteins product : RIKEN cDNA 9030420J04 gene transcript_id : XM_146632.7

name	Mmp10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506899 CCDS:CCDS22807.1 GeneID:17384 MGI:97007
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0030303 - stromelysin 2 activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030574 - collagen catabolism [Evidence IEA]; GO:0000270 - peptidoglycan metabolism [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : stromelysin 2 product : matrix metalloproteinase 10 protein_id : NP_062344.1

name	Mmp8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982184 CCDS:CCDS22808.1 GeneID:17394 MGI:1202395
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005615 - extracellular space [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004232 - interstitial collagenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008130 - neutrophil collagenase activity [Evidence ISS] [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0030574 - collagen catabolism [Evidence IEA]; GO:0000270 - peptidoglycan metabolism [Evidence IEA]; GO:0006508 - proteolysis [Evidence ISS] [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Collagenase-2 product : matrix metalloproteinase 8 protein_id : NP_032637.2

name	Mmp27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71892410 GeneID:234911 MGI:3039232
definition	codon_start : 1 product : matrix metalloproteinase 27 protein_id : NP_001025460.1

name	Mmp20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305275 CCDS:CCDS22809.1 GeneID:30800 MGI:1353466
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000270 - peptidoglycan metabolism [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : matrix metalloproteinase 20 (enamelysin) protein_id : NP_038931.1

name	Mmp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955033 GeneID:17393 MGI:103189
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004235 - matrilysin activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030574 - collagen catabolism [Evidence IEA]; GO:0000270 - peptidoglycan metabolism [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : matrilysin, uterine; matrix metalloproteinase 7 product : matrix metallopeptidase 7 protein_id : NP_034940.2

name	LOC100039782 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259454 GeneID:100039782
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_001473361.1

name	Tmem123 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526938 CCDS:CCDS22810.1 GeneID:71929 MGI:1919179
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : pro-oncosis receptor inducing membrane injury protein_id : NP_598500.1

name	Birc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680698 CCDS:CCDS22811.1 GeneID:11797 MGI:1197009
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IEA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : apoptosis inhibitor 2; baculoviral IAP repeat-containing 3 product : baculoviral IAP repeat-containing 2 protein_id : NP_031491.1

name	Birc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680696 CCDS:CCDS22812.1 GeneID:11796 MGI:1197007
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IEA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : apoptosis inhibitor 1; baculoviral IAP repeat-containing 2 product : baculoviral IAP repeat-containing 3 protein_id : NP_031490.1

name	Yap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678615 GeneID:22601 MGI:103262
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IGI] GO_function : GO:0016563 - transcriptional activator activity [Evidence IGI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] codon_start : 1 note : yes-associated protein, 65 kDa; yes-associated protein 1, 65kDa product : yes-associated protein 1 protein_id : NP_033560.1

name	EG665090 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94385574 GeneID:665090 MGI:3647003
definition	codon_start : 1 product : hypothetical protein protein_id : XP_979625.1

name	9230110C19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841033 CCDS:CCDS22813.1 GeneID:234912 MGI:3045346
definition	codon_start : 1 product : hypothetical protein LOC234912 protein_id : NP_950182.1

name	AK129341 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113866019 GeneID:234915 MGI:2680221
definition	codon_start : 1 product : hypothetical protein LOC234915 protein_id : NP_001038989.1

name	LOC100039855 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259456 GeneID:100039855
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473701.1

name	1700018P22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259444 GeneID:69395 MGI:1916645
definition	codon_start : 1 product : hypothetical protein LOC69395 protein_id : XP_001473049.1

name	Trpc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305597 CCDS:CCDS22815.1 GeneID:22068 MGI:109523
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0015279 - store-operated calcium channel activity [Evidence IDA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0007204 - elevation of cytosolic calcium ion concentration [Evidence IDA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : transient receptor protein 6 product : transient receptor potential cation channel, subfamily C, member 6 protein_id : NP_038866.1

name	Pgr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363098 CCDS:CCDS22816.1 GeneID:18667 MGI:97567
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IMP]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030879 - mammary gland development [Evidence IMP]; GO:0001542 - ovulation (sensu Mammalia) [Evidence IMP]; GO:0050847 - progesterone receptor signaling pathway [Evidence IDA]; GO:0050678 - regulation of epithelial cell proliferation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : progesterone receptor protein_id : NP_032855.2

name	9030420J04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94385577 GeneID:71544 MGI:1918794
definition	codon_start : 1 product : hypothetical protein LOC71544 protein_id : XP_146632.7

name	LOC665108 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665108
definition	number : 1 pseudo : _no_value

name	1700128F08Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:76669
definition	number : 1 pseudo : _no_value

name	1700128F08Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:76669
definition	number : 2 pseudo : _no_value

name	1700128F08Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:76669
definition	number : 3 pseudo : _no_value

name	LOC665057 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259452 GeneID:665057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 343 ESTs, 9 Proteins product : similar to Chromobox homolog 3 (HP1 gamma homolog, Drosophila) pseudo : _no_value transcript_id : XR_031139.1

clone name	MSMg01-111N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140O01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-465B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117N22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-393L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334L03
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-322F24.b	B6Ng01-322F24.g
ACC	GA111231	GA111232
length	1,177	1,146
definition	B6Ng01-322F24.b	B6Ng01-322F24.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(8,497,396 - 8,498,558)	(8,654,830 - 8,655,973)
sequence	gaattctttgtttagctctgtaccccatttttaatagggttgtttgattt tctggagtcccactttttgagttctttatatatatataggatattagtgt cctatcagatttaggattggtaaagatcctttcccaatctgttggtggcc tttttgtcttagctcgtacttagatggacatctgagctatacagggtttc tttcctcttctataaggcagtattcacacaatgacacagctagacacaac aagatcaccatcacagaactatttgtaatagcattcatcatctacacagc tgcaacctcttgagtatttagtacatgagtctctagagctgagccaaaag ctttttatcatttaaatatcacaaaccacttgatgcaatgacctttacta cacgttaagaaattaaaacttgaatataagagctcaggctctgtgaagca gtatggaaaatctcttcacagtctctccatagggcagtgtcactcaaaag gtctcaggtcttacagtctaacaagagttgagtgttgaatgtgttgtggc tccctacattgcttcacagaagagactgtccctgttgcacatctcccatt gctggagcagcatttctctggctagtgccaggattttgtggatttcagta agcatgcatgagccaggctcccaggatgtgaccacctcaaggtgctgacc caatcgagtcttagagcccagatgcctccgtgtctgcttgctgcccttgc aggtttgcacagagtctgctcattctaagtaccatggcaaagtatattgg acattgtcacaaggatttttgtgcccagaaaattgcaagagaatgtgttc ttagaggagaaaacagttcctccatagcttggtcagagaaaaagtggtct gtgttggtactttttcaacacagctttcggtaattagttctgatttcctc aggcttctgtgagaacacttatgcccactcttgcatgaaatctcaataca caatacacaaaattcatctgcatgttataatcctaattgaatcgtttttc tattataggagtgttgtacgcacagaagccattgttacagaaacaagttt ccttatcacaatttcttaaggcatcgaatgagtcattgtgcttggattga gtgaatgtccttctactaggcagtgct	gaattcatcactaggcacagtgacacacagacccagaaggtagaggctgg aggaccaggagataaaggtcattctctggaatgcaacaagttctaggcta ccttgaactacaaagaatcctatctccacaaaaagtagaaaacaaaaaca tcacaaaaaaataaaaattcaccttgttacagtattttaaggtttttttt aagatattttctttatttacatttcaaatgttatcctctttcccattttc ctctccccaaatcccctatcccctctgccctttccctgctccccaaccca cccactcccacttcctggccctggaattcccctatactggggcatagaac cttcacaagaccaagaaacagtgatgcattagatatgacaaaccccctgg attttgctgactcagcatatccaatcaatactgtgtttaagagcaaggtt aaagtcttcagcattccttgaccaacactgaccagagaaacatggaaagt ggagaaataacaggcagaatctgcttcattccattgattatttatcctta tactacttgaaagatgtaagcatgaactataagatcatatagatttcata cctcaatttcctggaatgaactattgatcatcgcaattaacatatttagc aaaacaatgaccattgtgacattatagacaccatacagaacgtagccgat gttttcaatgaacttgtgattgtagttaatgaccactgacttcacttcag aaagaccaaagatagcccagaacagtgtcttaaaactttcctcaactctg gagaatcaaatagaaagaagaatatgagaaaagatataaatacataataa tagaatcatcataaaatcagttgtttcaatttccttgtttcaactactag atactcatgagaaatcaaaattgcctgaatttttagtttcccttctgtaa aacggagaaaatagcagatctgggttcattgcaatgatctgatactatga atctgaagcatatgccttgaggtttagcattggatagatggtaaggctta tgagaataacaatcattactaataagaacttttatatttcatgatcgatg ggaatttgcaagtttaaatgaatgcctttaaatacaactgttagag
quality values	Open. Hide. 58 29 29 26 58 58 58 58 58 58 58 58 41 31 62 62 62 62 62 62 62 62 47 62 62 54 41 62 62 62 62 47 56 56 56 44 38 49 44 56 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 62 62 59 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 46 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 58 54 58 58 54 58 58 58 58 58 52 54 58 58 58 58 58 58 48 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 54 58 58 54 58 54 58 58 58 54 54 50 58 58 58 58 58 58 54 52 54 52 54 58 58 40 58 49 54 47 58 58 58 54 58 58 51 58 58 58 58 51 50 52 53 58 58 58 51 58 47 47 54 58 54 58 58 58 58 58 32 58 53 49 58 52 58 58 51 46 54 54 58 58 49 34 49 52 51 49 58 48 46 46 41 58 32 28 58 58 58 58 53 58 49 53 33 58 58 53 53 53 53 58 51 50 54 52 58 58 52 46 54 58 58 32 58 37 41 49 49 52 53 53 58 58 49 52 58 39 32 53 41 49 35 33 46 36 49 43 43 41 35 43 50 58 39 58 49 50 50 50 31 58 39 37 51 53 53 32 58 50 50 41 33 33 39 31 46 37 44 33 39 32 43 53 43 53 54 36 42 40 54 32 42 51 52 52 45 54 35 39 41 52 33 41 52 42 54 51 46 38 37 39 31 27 40 28 54 40 40 35 33 42 33 35 53 45 39 52 37 47 35 32 40 33 36 32 52 40 39 45 33 29 35 37 31 27 27 54 25 33 41 54 53 33 45 36 39 40 36 28 40 25 32 25 29 29 32 32 32 32 31 32 19 47 32 52 19 18 51 49 52 52 40 23 32 25 51 33 21 25 53 49 49 32 26 28 21 25 31 27 29 46 19 32 31 27 31 31 33 30 11 26 31 27 30 31 42 24 30 31 16 37 51 51 29 29 25 31 18 14 30 31 31 31 31 28 31 38 20 31 30 31 30 25 14 31 33 28 42 21 36 46 47 46 32 17 18 41 31 31 38 31 27 21 31 26 31 33 31 31 31 31 30 46 47 48 15 15 26 21 28 24 31 30 23 27 41 48 31 18 25 31 14 28 13 26 32 31 24 24 15 24 31 24 31 19 41 6 6 29 29 31 8 4 16 15 19 31 24 19 38 28 13 43 11 37 31 25 23 33 21 44 21 22 22 19 36 24 18 33 31 16 24 23 32 8 22 14 29 21 44 14 11 26 32 34 33 22 26 14 14 10 19 7 28 21 20 10 9 4 4 34 37 6 6 13 21 22 27 32 14 26 32 24 28 17 15 5 10 19 26 33 10 11 6 6 7 4 22 16 19 17 26 32 30 11 21 31 38 32 10 11 15 22 4 14 9 6 13 28 11 21 6 9 11 9 7 8 7 4 8 5 6 9 9 8 8 6 6 4 5 8 19 6 7 27 6 20 6 7 5 7 17 27 13 8 6 6 3 5 21 20 3 3 5 9 8 3 3 4 10 4 5 17 25 9 14 6 5 7 4 14 18 10 15 18 21 10 19 4 4 4 3 1 1 2 14 8 5 6 5 9 2 3 12 7 5 9 4 8 12 10 4 5 5 1 4 4 4 4 4 6 6 9 11 4 7 3 1 2 6 3 7 4 9 4 5 16 7	Open. Hide. 62 47 56 54 62 54 44 62 47 51 54 47 47 56 49 35 56 62 59 59 59 59 59 62 51 62 62 62 59 62 59 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 39 62 59 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 59 59 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 49 62 62 62 62 62 62 62 62 47 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 47 62 62 62 62 62 62 62 62 62 62 54 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 53 58 58 54 54 58 58 58 54 58 58 58 58 54 58 54 54 58 58 58 58 58 58 54 54 58 58 58 42 37 58 58 58 38 42 54 58 54 58 54 58 54 58 58 58 58 54 58 54 58 54 58 58 58 58 58 58 58 58 54 54 42 54 58 54 58 58 58 54 58 58 58 54 58 58 54 54 58 58 54 46 40 58 49 58 52 58 58 58 48 54 58 58 53 42 58 50 49 58 58 53 51 51 54 58 50 54 50 47 58 51 58 49 42 58 54 48 43 49 49 53 53 58 49 54 54 50 54 53 53 51 53 50 51 50 32 51 50 50 51 53 50 58 50 51 52 49 32 58 58 28 41 50 51 50 58 41 47 41 42 43 40 54 42 58 32 33 31 53 52 40 50 47 29 53 52 41 41 24 22 46 50 53 41 36 58 49 38 42 45 53 42 54 44 36 58 31 51 52 58 54 38 42 30 49 52 53 54 49 41 50 49 53 41 51 35 26 47 51 32 52 37 51 42 26 54 37 52 33 37 50 37 49 40 49 28 19 37 52 40 32 38 46 46 33 27 23 54 54 45 26 43 33 40 25 51 54 42 34 32 40 34 28 54 34 42 27 54 27 33 33 33 32 47 22 28 32 36 29 49 49 32 32 32 52 42 32 32 32 39 30 31 34 52 32 31 52 53 34 22 45 30 27 31 29 52 34 52 31 35 34 52 31 31 36 33 16 33 30 31 23 31 30 51 31 32 46 46 31 30 31 18 26 33 33 46 27 51 30 51 21 42 21 33 33 31 31 51 31 31 44 31 25 31 29 37 43 35 42 29 46 46 13 16 37 33 17 12 27 36 22 46 32 18 14 30 31 48 41 24 19 32 17 43 24 47 26 30 24 29 31 34 27 42 31 26 21 35 31 27 34 21 26 24 32 34 42 24 31 48 36 32 18 8 47 47 24 29 31 36 15 16 27 35 27 25 35 47 47 47 18 21 21 28 48 21 27 42 25 30 21 19 14 20 18 26 44 48 32 25 25 19 17 5 10 44 38 38 22 15 13 28 33 11 21 19 31 27 28 43 23 4 9 19 15 27 16 30 18 14 22 20 32 27 31 20 25 27 21 19 22 32 25 32 21 19 20 30 33 32 32 32 29 30 22 8 8 22 6 9 20 14 22 16 16 21 21 11 18 8 40 20 27 10 20 24 21 16 16 21 10 7 4 6 22 18 14 21 14 17 15 3 8 11 21 5 5 15 20 23 9 10 28 9 10 16 6 4 8 14 6 5 7 6 27 27 14 18 27 12 10 7 5 11 7 4 7 47 29 10 14 15 8 19 26 14 18 24 7 22 18 20 16 16 25 9 9 28 9 15 6 20 24 6 18 5 20 23 10 11 23 8 19 26 17 6 6 11 8 3 4 7 7 25 28 8 3 14 4 4 5 13 13 4 7 5 5 5 3 6 4 10 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_8497396_8498558
seq2: B6Ng01-322F24.b_47_1223

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTGTTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTGTTTGATTT  50

seq1  TCTGGAGTCCCACTTTTTGAGTTCTTTATATATATATAGGATATTAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCCACTTTTTGAGTTCTTTATATATATATAGGATATTAGTGT  100

seq1  CCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC  150

seq1  TTTTTGTCTTAGCTCGTACTTAGATGGACATCTGAGCTATACAGGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTAGCTCGTACTTAGATGGACATCTGAGCTATACAGGGTTTC  200

seq1  TTTCCTCTTCTATAAGGCAGTATTCACACAATGACACAGCTAGACACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCTATAAGGCAGTATTCACACAATGACACAGCTAGACACAAC  250

seq1  AAGATCACCATCACAGAACTATTTGTAATAGCATTCATCATCTACACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACCATCACAGAACTATTTGTAATAGCATTCATCATCTACACAGC  300

seq1  TGCAACCTCTTGAGTATTTAGTACATGAGTCTCTAGAGCTGAGCCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTCTTGAGTATTTAGTACATGAGTCTCTAGAGCTGAGCCAAAAG  350

seq1  CTTTTTATCATTTAAATATCACAAACCACTTGATGCAATGACCTTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATCATTTAAATATCACAAACCACTTGATGCAATGACCTTTACTA  400

seq1  CACGTTAAGAAATTAAAACTTGAATATAAGAGCTCAGGCTCTGTGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTAAGAAATTAAAACTTGAATATAAGAGCTCAGGCTCTGTGAAGCA  450

seq1  GTATGGAAAATCTCTTCACAGTCTCTCCATAGGGCAGTGTCACTCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAAATCTCTTCACAGTCTCTCCATAGGGCAGTGTCACTCAAAAG  500

seq1  GTCTCAGGTCTTACAGTCTAACAAGAGTTGAGTGTTGAATGTGTTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTCTTACAGTCTAACAAGAGTTGAGTGTTGAATGTGTTGTGGC  550

seq1  TCCCTACATTGCTTCACAGAAGAGACTGTCCCTGTTGCACATCTCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACATTGCTTCACAGAAGAGACTGTCCCTGTTGCACATCTCCCATT  600

seq1  GCTGGAGCAGCATTTCTCTGGCTAGTGCCAGGATTTTGTGGATTTCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCAGCATTTCTCTGGCTAGTGCCAGGATTTTGTGGATTTCAGTA  650

seq1  AGCATGCATGAGCCAGGCTCCCAGGATGTGACCACCTCAAGGTGCTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATGAGCCAGGCTCCCAGGATGTGACCACCTCAAGGTGCTGACC  700

seq1  CAATCGAGTCTTAGAGCCCAGATGCCTCCGTGTCTGCTTGCTGCCCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGAGTCTTAGAGCCCAGATGCCTCCGTGTCTGCTTGCTGCCCTTGC  750

seq1  AGGTTTGCACAGAGTCTGCTCATTCTAAGTACCATGGCAAAGTATATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCACAGAGTCTGCTCATTCTAAGTACCATGGCAAAGTATATTGG  800

seq1  ACATTGTCACAAGGATTTTTGTGCCCAGAAAATTGCAAGAGAATGTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCACAAGGATTTTTGTGCCCAGAAAATTGCAAGAGAATGTGTTC  850

seq1  TTAGAGGAGAAAACAGTTCCTCCATAGCTTGGTCAGAGAAAAAGTGGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAGAAAACAGTTCCTCCATAGCTTGGTCAGAGAAAAAGTGGTCT  900

seq1  GTGTTGGTAC-TTTTCAACACAGCTTTCGGTAATTAGTTCTGA-TTCCTC  948
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GTGTTGGTACTTTTTCAACACAGCTTTCGGTAATTAGTTCTGATTTCCTC  950

seq1  AGGCTTCTGTGAAGAACACTTATGCCCACTCTTGCAATGAAATCTCAATA  998
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AGGCTTCTGTG-AGAACACTTATGCCCACTCTTGC-ATGAAATCTCAATA  998

seq1  CACAATACACAAAATTCATCTGCATGTTATAAT-CTAATTGAATCGTTTT  1047
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACAATACACAAAATTCATCTGCATGTTATAATCCTAATTGAATCGTTTT  1048

seq1  CTAATTATAGGAGTG-TGTACGCACAG-AGC--ATGTT-CAG-AACACGT  1091
         |||||||||||| ||||||||||| |||   |||| ||| |||| ||
seq2  TCTATTATAGGAGTGTTGTACGCACAGAAGCCATTGTTACAGAAACAAGT  1098

seq1  TTTCTTATCACA--TTC-TAGGGCATCGAATGAG-CA-TGTGGTT-GAAT  1135
      || |||||||||  ||| || ||||||||||||| || |||| || || |
seq2  TTCCTTATCACAATTTCTTAAGGCATCGAATGAGTCATTGTGCTTGGATT  1148

seq1  GAGTG-ATGT-CTTCTACATAGGCAGTGCT  1163
      ||||| |||| ||||||| |||||||||||
seq2  GAGTGAATGTCCTTCTAC-TAGGCAGTGCT  1177

seq1: chr9_8654830_8655973
seq2: B6Ng01-322F24.g_69_1214 (reverse)

seq1  CTCTAACAAGTTGTATTTTAAAAGCAATTCATTTAACTTTGCCAAAT-CC  49
      ||||||| ||||||||||  ||||  ||||||||||  |||| || | ||
seq2  CTCTAAC-AGTTGTATTT--AAAGGCATTCATTTAAACTTGCAAATTCCC  47

seq1  ATCGATCATTGAAATATAAATGT--CTATTAGTTATGA-TGTTA-TCTCA  95
      |||||||| ||||||||||| ||   ||||||| |||| ||||| |||||
seq2  ATCGATCA-TGAAATATAAAAGTTCTTATTAGTAATGATTGTTATTCTCA  96

seq1  TAGCCTTTACCATCTATCCAATGCTAAACCTCAAGGCATATGCTTCAGAT  145
      ||  | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTACCATCTATCCAATGCTAAACCTCAAGGCATATGCTTCAGAT  146

seq1  TCATAGTATCAGATCATTGCAATGAACCCAGATCTGCTATTTTCTCCGTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTATCAGATCATTGCAATGAACCCAGATCTGCTATTTTCTCCGTT  196

seq1  TTACAGAAGGGAAACTAAAAATTCAGGCAATTTTGATTTCTCATGAGTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGGGAAACTAAAAATTCAGGCAATTTTGATTTCTCATGAGTAT  246

seq1  CTAGTAGTTGAAACAAGGAAATTGAAACAACTGA-TTTATGATGATTCTA  294
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAGTAGTTGAAACAAGGAAATTGAAACAACTGATTTTATGATGATTCTA  296

seq1  TTATTATGTATTTATATCTTTTCTCATATTCTTCTTTCTATTTGATTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTATTTATATCTTTTCTCATATTCTTCTTTCTATTTGATTCTC  346

seq1  CAGAGTTGAGGAAAGTTTTAAGACACTGTTCTGGGCTATCTTTGGTCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGAGGAAAGTTTTAAGACACTGTTCTGGGCTATCTTTGGTCTTT  396

seq1  CTGAAGTGAAGTCAGTGGTCATTAACTACAATCACAAGTTCATTGAAAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGAAGTCAGTGGTCATTAACTACAATCACAAGTTCATTGAAAAC  446

seq1  ATCGGCTACGTTCTGTATGGTGTCTATAATGTCACAATGGTCATTGTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTACGTTCTGTATGGTGTCTATAATGTCACAATGGTCATTGTTTT  496

seq1  GCTAAATATGTTAATTGCGATGATCAATAGTTCATTCCAGGAAATTGAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATATGTTAATTGCGATGATCAATAGTTCATTCCAGGAAATTGAGG  546

seq1  TATGAAATCTATATGATCTTATAGTTCATGCTTACATCTTTCAAGTAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATCTATATGATCTTATAGTTCATGCTTACATCTTTCAAGTAGTA  596

seq1  TAAGGATAAATAATCAATGGAATGAAGCAGATTCTGCCTGTTATTTCTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAAATAATCAATGGAATGAAGCAGATTCTGCCTGTTATTTCTCC  646

seq1  ACTTTCCATGTTTCTCTGGTCAGTGTTGGTCAAGGAATGCTGAAGACTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCATGTTTCTCTGGTCAGTGTTGGTCAAGGAATGCTGAAGACTTT  696

seq1  AACCTTGCTCTTAAACACAGTATTGATTGGATATGCTGAGTCAGCAAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTCTTAAACACAGTATTGATTGGATATGCTGAGTCAGCAAAAT  746

seq1  CCAGGGGGTTTGTCATATCTAATGCATCACTGTTTCTTGGTCTTGTGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGTTTGTCATATCTAATGCATCACTGTTTCTTGGTCTTGTGAAG  796

seq1  GTTCTATGCCCCAGTATAGGGGAATTCCAGGGCCAGGAAGTGGGAGTGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGCCCCAGTATAGGGGAATTCCAGGGCCAGGAAGTGGGAGTGGG  846

seq1  TGGGTTGGGGAGCAGGGAAAGGGCAGAGGGGATAGGGGATTTGGGGAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGGGAGCAGGGAAAGGGCAGAGGGGATAGGGGATTTGGGGAGAG  896

seq1  GAAAATGGGAAAGAGGATAACATTTGAAATGTAAATAAAGAAAATATCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGAAAGAGGATAACATTTGAAATGTAAATAAAGAAAATATCTT  946

seq1  AAAAAAAACCTTAAAATACTGTAACAAGGTGAATTTTTATTTTTTTGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCTTAAAATACTGTAACAAGGTGAATTTTTATTTTTTTGTGA  996

seq1  TGTTTTTGTTTTCTACTTTTTGTGGAGATAGGATTCTTTGTAGTTCAAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTCTACTTTTTGTGGAGATAGGATTCTTTGTAGTTCAAGG  1046

seq1  TAGCCTAGAACTTGTTGCATTCCAGAGAATGACCTTTATCTCCTGGTCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGAACTTGTTGCATTCCAGAGAATGACCTTTATCTCCTGGTCCT  1096

seq1  CCAGCCTCTACCTTCTGGGTCTGTGTGTCACTGTGCCTAGTGATGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTACCTTCTGGGTCTGTGTGTCACTGTGCCTAGTGATGAATTC  1146

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information