BAC Information

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BAC

Clone NameB6Ng01-322M01
Chromosome9 (Build37)
Map Location 90,177,418 - 90,321,271
singlet/doubletdoublet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
Downstream geneLOC100039777, LOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322M01.bB6Ng01-322M01.g
ACCGA111514GA111515
length1,0101,100
definitionB6Ng01-322M01.b B6Ng01-322M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,320,726 - 90,321,271)(90,177,418 - 90,178,536)
sequence
gaattctccaaagaaaaaaagtcttgttaaatttgagccatgcttggggg
ctggagagatgactcagtgattaagagcacggactgctcttccagaggtc
ctgagttcaattcccaacaaccacatagtggctcacaatcatctgtaata
ggatctaatgccctcttctggtgggtccgtaggcagctgcagtgtactct
tatacataaaataagtaaacaaatcttcaaaaacataaaaataaaaaatt
tgaggactgctcaatagaagcagtaatttcatgcctgaagttcgaactgc
tatgttattttacagtattcactgtcttagggtttcatttctgtgaagag
acaccataaccacagcaactcttataagggaaaacattttaccgaggctg
atttatggtttcagaggtttagtccattatcatcatagcaatatcatcaa
agtgagaaacatggcagcatccagacggacatggtgctggaggagccaag
atttctacatcctgatccccagccagcagaagactgtatgccacactgga
cagtctgagcttagaaaaccttcctctaacaaggccacaccttccccaat
taagccacacctcctaatagtgccactccctatgggacaagcatttaaac
acctgagtttatgggggccatacctattcataccacaatatttgtgctgt
taaattgttttttaaatatctctatttatactcagaatgttctctacctt
ggtcagagaagaatcatacagccccttcaactcccagcagacagcagtca
ctacagaggttcataactggttaaatgtttcaataagtaactgaggggtc
agccctaaatgagacatctatattaaccacatcactactagctcaggaac
agcacagaaaaggaggccaaaagaatgcaagaactaggcggccagtgatg
gcacatgactttaatcccagtactctggagtcagagccaggcagttttct
gaattcaaag
gaattcaagtctcaacatcctgaagcttacatgaagttaaagtttacaaa
aggagaccaaaggtttaggtacattagtgttaccactgtttgtaatctgt
agagaaatccacattgtagaaaagcagtagacccatacctttgagtcata
gtaaaagcttttggctcccaaagtgattttgaagtgaaagcattaaaaca
cacacacacacacacacacacacacacacatacacacgtgtgtatgtgtg
tgtgtgtgtgtgttatttttagcatgagaatcaccttttggtttatattt
aggaaaaaaaaaaaccaaagggactttttaaaaccaaagggaattaatac
caaactctattgattaacatgattaaactcttaaccttttgagtcttaac
atcatatattggtctttacgttttattattattttaattattttctcaga
tccttataacttgcataaacttcaaacctttctccttttcccatttagtc
atttaccacatgatacaagtggttgagagcatagaaaagcaagttctttt
aaataaaggaatagtaaaatgttacattgaaacctgttttgtaccaggag
acctaatcgctgtataaaaagcaaggcctgattttcatatatgagaatgt
attgacaaggtagctgcagctaaactgataaagctgtagtgtaaaagtga
cttttgttctcctgatgtaatcatttctctgatgcttactgcttccatct
gctaacctaggcctagtcctggagcattctagtctctgtacaaatctacg
cctagaatgttttcagcctccaagacttactactgaataagctaacccct
tcttgtttttctgaacctggcgggctgcttcaactcagctgtttagctca
aaactcctctccaagctgactgattcaatctggcttctcttggcctctga
atgaattgctctgcttggctcatactaacttgggcaatatttctattttc
tggctcttctcatctctggctcatctgtttcactgtgctagttgtctctc
ttcaactatctctgtaaactctccagtaaactgaccttctcatgatgctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90320726_90321271
seq2: B6Ng01-322M01.b_45_590 (reverse)

seq1  GTGTGGCATACAGTCTTCTGCTGGCTGGGGATCAGGATGTAGAAATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCATACAGTCTTCTGCTGGCTGGGGATCAGGATGTAGAAATCTTG  50

seq1  GCTCCTCCAGCACCATGTCCGTCTGGATGCTGCCATGTTTCTCACTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCAGCACCATGTCCGTCTGGATGCTGCCATGTTTCTCACTTTGA  100

seq1  TGATATTGCTATGATGATAATGGACTAAACCTCTGAAACCATAAATCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGCTATGATGATAATGGACTAAACCTCTGAAACCATAAATCAGC  150

seq1  CTCGGTAAAATGTTTTCCCTTATAAGAGTTGCTGTGGTTATGGTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAAAATGTTTTCCCTTATAAGAGTTGCTGTGGTTATGGTGTCTCT  200

seq1  TCACAGAAATGAAACCCTAAGACAGTGAATACTGTAAAATAACATAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAATGAAACCCTAAGACAGTGAATACTGTAAAATAACATAGCAG  250

seq1  TTCGAACTTCAGGCATGAAATTACTGCTTCTATTGAGCAGTCCTCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAACTTCAGGCATGAAATTACTGCTTCTATTGAGCAGTCCTCAAATT  300

seq1  TTTTATTTTTATGTTTTTGAAGATTTGTTTACTTATTTTATGTATAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTATGTTTTTGAAGATTTGTTTACTTATTTTATGTATAAGAG  350

seq1  TACACTGCAGCTGCCTACGGACCCACCAGAAGAGGGCATTAGATCCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCAGCTGCCTACGGACCCACCAGAAGAGGGCATTAGATCCTATT  400

seq1  ACAGATGATTGTGAGCCACTATGTGGTTGTTGGGAATTGAACTCAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGATTGTGAGCCACTATGTGGTTGTTGGGAATTGAACTCAGGACC  450

seq1  TCTGGAAGAGCAGTCCGTGCTCTTAATCACTGAGTCATCTCTCCAGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAGCAGTCCGTGCTCTTAATCACTGAGTCATCTCTCCAGCCCC  500

seq1  CAAGCATGGCTCAAATTTAACAAGACTTTTTTTCTTTGGAGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGGCTCAAATTTAACAAGACTTTTTTTCTTTGGAGAATTC  546

seq1: chr9_90177418_90178536
seq2: B6Ng01-322M01.g_67_1166

seq1  GAATTCAAGTCTCAACATCCTGAAGCTTACATGAAGTTAAAGTTTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCTCAACATCCTGAAGCTTACATGAAGTTAAAGTTTACAAA  50

seq1  AGGAGACCAAAGGTTTAGGTACATTAGTGTTACCACTGTTTGTAATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCAAAGGTTTAGGTACATTAGTGTTACCACTGTTTGTAATCTGT  100

seq1  AGAGAAATCCACATTGTAGAAAAGCAGTAGACCCATACCTTTGAGTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCCACATTGTAGAAAAGCAGTAGACCCATACCTTTGAGTCATA  150

seq1  GTAAAAGCTTTTGGCTCCCAAAGTGATTTTGAAGTGAAAGCATTAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCTTTTGGCTCCCAAAGTGATTTTGAAGTGAAAGCATTAAAACA  200

seq1  CACACACACACACACACACACACACACACATACACACGTGTGTATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATACACACGTGTGTATGTGTG  250

seq1  TGTGTGTGTGTGTTATTTTTAGCATGAGAATCACCTTTTGGTTTATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTATTTTTAGCATGAGAATCACCTTTTGGTTTATATTT  300

seq1  AGGAAAAAAAAAAACCAAAGGGACTTTTTAAAACCAAAGGGAATTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAAACCAAAGGGACTTTTTAAAACCAAAGGGAATTAATAC  350

seq1  CAAACTCTATTGATTAACATGATTAAACTCTTAACCTTTTGAGTCTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTATTGATTAACATGATTAAACTCTTAACCTTTTGAGTCTTAAC  400

seq1  ATCATATATTGGTCTTTACGTTTTATTATTATTTTAATTATTTTCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATTGGTCTTTACGTTTTATTATTATTTTAATTATTTTCTCAGA  450

seq1  TCCTTATAACTTGCATAAACTTCAAACCTTTCTCCTTTTCCCATTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATAACTTGCATAAACTTCAAACCTTTCTCCTTTTCCCATTTAGTC  500

seq1  ATTTACCACATGATACAAGTGGTTGAGAGCATAGAAAAGCAAGTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCACATGATACAAGTGGTTGAGAGCATAGAAAAGCAAGTTCTTTT  550

seq1  AAATAAAGGAATAGTAAAATGTTACATTGAAACCTGTTTTGTACCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGAATAGTAAAATGTTACATTGAAACCTGTTTTGTACCAGGAG  600

seq1  ACCTAATCGCTGTATAAAAAGCAAGGCCTGATTTTCATATATGAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCGCTGTATAAAAAGCAAGGCCTGATTTTCATATATGAGAATGT  650

seq1  ATTGACAAGGTAGCTGCAGCTAAACTGATAAAGCTGTAGTGTAAAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAGGTAGCTGCAGCTAAACTGATAAAGCTGTAGTGTAAAAGTGA  700

seq1  CTTTTGTTCTCCTGATGTAATCATTTCTCTGATGCTTACTGCTTCCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCTCCTGATGTAATCATTTCTCTGATGCTTACTGCTTCCATCT  750

seq1  GCTAACCTAGGCCTAGTCCTGGAGCATTCTAGTCTCTGTACAAATCTACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTAGGCCTAGTCCTGGAGCATTCTAGTCTCTGTACAAATCTACG  800

seq1  CCTAGAATGTTTTCAGCCTCCAAGACTTACTACTGAATAAGCTAACCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATGTTTTCAGCCTCCAAGACTTACTACTGAATAAGCTAACCCCT  850

seq1  TCTTGTTTTTTCTGAACCTGGCGGGCTGCTTCAACTCAGCTGTTTTAGCT  900
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTG-TTTTTCTGAACCTGGCGGGCTGCTTCAACTCAGCTG-TTTAGCT  898

seq1  CAAAACTCCTCTCCAAGCTGACTGATTCAATCTGGCTTCTCTTGGCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCTCTCCAAGCTGACTGATTCAATCTGGCTTCTCTTGGCCTCT  948

seq1  GAATGAATTGCTCTGCTTGGCCTCATACTAACTTGGGCAATATTTTCTAT  1000
      |||||||||||||||||||| ||||||||||||||||||||| |||||| 
seq2  GAATGAATTGCTCTGCTTGG-CTCATACTAACTTGGGCAATA-TTTCTA-  995

seq1  TTTTCTGGCTCTTTCTCATTCTCTGGCTCATTCTGTTTTCACCTGTGCCT  1050
      ||||||||||| |||||| ||||||||||| |||| ||||| ||||| ||
seq2  TTTTCTGGCTC-TTCTCA-TCTCTGGCTCA-TCTG-TTTCA-CTGTG-CT  1039

seq1  AGTTTGTTCTCTCTTCAACTTATCTCTGTAAAACTCTCCCAGTAAAACTG  1100
      ||||   |||||||||||| ||||||||| ||||||| ||||| ||||||
seq2  AGTT--GTCTCTCTTCAAC-TATCTCTGT-AAACTCT-CCAGT-AAACTG  1083

seq1  CCCCTTCTCCATGATGCTC  1119
        |||||| ||||||||||
seq2  -ACCTTCT-CATGATGCTC  1100