BAC Information

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BAC

Clone NameB6Ng01-324B12
Chromosome9 (Build37)
Map Location 91,098,794 - 91,221,662
singlet/doubletdoublet
Overlap geneLOC621576
Upstream geneTbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, 1700057G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324B12.bB6Ng01-324B12.g
ACCGA112499GA112500
length4631,092
definitionB6Ng01-324B12.b B6Ng01-324B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,098,794 - 91,099,262)(91,220,559 - 91,221,662)
sequence
cagggccaggaagcagaagtgggtaggttgaggagcaggaggagagagga
ggggagatgggattttcggagaggaaactaggaaagggatagcatttgaa
atataaatgaagaaaatatctaatagaaaaatatatttaaaaaaaagaaa
ggaatacatccttactagccagaagctggaaaaacccagatgtcccacaa
cagaagaatggatacagaaaaatggggttcgttttcacaatggaacacta
ctcagctattaagaactgagttttgcaggcatatggacagatgttagcca
aaaagtacagaatacccgggatacaatgcatggaactcaaaaaggttaac
aaaccaaagagcacaagtgaagatgtctcaatcccacttgaaagggagaa
gaaagcaatcacaggagggaggagggagagagggactgggtgagaaaggg
gacagggagggga
gaattccatagtaggattaactaagaataagctttaaactctttaaagtt
ttttttttttttttttaattatctggtggtcatagaacgatgtctgtttg
ggtagctatgctctcttgtgatcctgccattttactttcctagtgatttg
aatcagatactgtagtcttcaatcactcaggcaccattcttagtcatgga
ctgtgtcacagcccgtcaacttcaagagatggttgaagtggaaatttctg
gtttctttggagactcagttctgtcacgtgatgtttttctggaagctgtc
ttatgagaggatgttttgacgacgcaggcatgtgagagggcgctttgctg
atcacagacatgtggtgcttttctagaagctgtcttgtgaaagcgcatgt
gacgttttgctggaacagatgcttgagaggacacgtgatgcttgggaaag
gtagaagattaacccaacagacagttgctctggcactgtgttgcttctct
gggctctgctgagctggtctttactgatgatgctgtggcattggttcacc
ttgccttcttcacagatcattgtttacagagagaaatggaccaaacaact
tctcatgatagtccagttgcttcctattacttttgtggacataggctgac
tatcagagccttcaggattctgccagatggaaccgccattgttggtttgt
gaataatggctgtgagtggatggagctaccactgcggatttgtgtgaact
gagctgctgatatcctgacaacaaagactgcaatcacctctcccccccac
cccccaaaaaaaaccaaacaaaccctattcctaaacaggcccacatccct
ttttgcctattaacctttcccttttctttaccactggtggagagtacact
ggtggtggctagaaggaggttaaagcatttaagaatcttattaaagtagt
tttgaaaaatacagcctgcagatgcatagattttcctactatccccatag
atatgtaaagaaaatacaatatttaactcttcaaatatggacatgtgaaa
tcagaaagactgggccgactgctgcatgtggttacatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91098794_91099262
seq2: B6Ng01-324B12.b_51_519

seq1  GAATTCCAGGGCCAGGAAGCAGAAGTGGGTAGGTTGAGGAGCAGGAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCCAGGAAGCAGAAGTGGGTAGGTTGAGGAGCAGGAGGAG  50

seq1  AGAGGAGGGGAGATGGGATTTTCGGAGAGGAAACTAGGAAAGGGATAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGGAGATGGGATTTTCGGAGAGGAAACTAGGAAAGGGATAGCA  100

seq1  TTTGAAATATAAATGAAGAAAATATCTAATAGAAAAATATATTTAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATAAATGAAGAAAATATCTAATAGAAAAATATATTTAAAAAA  150

seq1  AAGAAAGGAATACATCCTTACTAGCCAGAAGCTGGAAAAACCCAGATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAATACATCCTTACTAGCCAGAAGCTGGAAAAACCCAGATGTC  200

seq1  CCACAACAGAAGAATGGATACAGAAAAATGGGGTTCGTTTTCACAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAGAAGAATGGATACAGAAAAATGGGGTTCGTTTTCACAATGGA  250

seq1  ACACTACTCAGCTATTAAGAACTGAGTTTTGCAGGCATATGGACAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTCAGCTATTAAGAACTGAGTTTTGCAGGCATATGGACAGATGT  300

seq1  TAGCCAAAAAGTACAGAATACCCGGGATACAATGCATGGAACTCAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAAAGTACAGAATACCCGGGATACAATGCATGGAACTCAAAAAG  350

seq1  GTTAACAAACCAAAGAGCACAAGTGAAGATGTCTCAATCCCACTTGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAACCAAAGAGCACAAGTGAAGATGTCTCAATCCCACTTGAAAG  400

seq1  GGAGAAGAAAGCAATCACAGGAGGGAGGAGGGAGAGAGGGACTGGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAAGCAATCACAGGAGGGAGGAGGGAGAGAGGGACTGGGTGAG  450

seq1  AAAGGGGACAGGGAGGGGA  469
      |||||||||||||||||||
seq2  AAAGGGGACAGGGAGGGGA  469

seq1: chr9_91220559_91221662
seq2: B6Ng01-324B12.g_63_1154 (reverse)

seq1  TATATATGTACACACATGCAAGCAGGTCGGCCCAAGTCTTTCTGGTTTTT  50
      ||||||||||  ||||||| |||| |||||||| ||||||||||   |||
seq2  TATATATGTAACCACATGC-AGCA-GTCGGCCC-AGTCTTTCTG--ATTT  45

seq1  CACATGGTCAATATTTGAAGAGTTAAAATATTGTATTTTCTTTACATATC  100
      ||||| ||| |||||||||||||| |||||||||||||||||||||||||
seq2  CACAT-GTCCATATTTGAAGAGTT-AAATATTGTATTTTCTTTACATATC  93

seq1  TATGGGGATAGTAGGAAAAATCTATGCCATCTGCAGGCTTGTATTTTTCA  150
      ||||||||||||||| |||||||||| ||||||||||| |||||||||||
seq2  TATGGGGATAGTAGG-AAAATCTATG-CATCTGCAGGC-TGTATTTTTCA  140

seq1  AAACCTACTTTAATAAGATTTCTTAAATGCTTTAACCTCCCTTCTAGCCA  200
      ||| |||||||||||||| ||||||||||||||||||| |||||||||||
seq2  AAA-CTACTTTAATAAGA-TTCTTAAATGCTTTAACCT-CCTTCTAGCCA  187

seq1  CCACCAGTGTACTCTCCACCAGTGGTAAAGAAAA-GGAAAGGTTAATAGG  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCACCAGTGTACTCTCCACCAGTGGTAAAGAAAAGGGAAAGGTTAATAGG  237

seq1  CAAAAAGGGATGTGGGCCTGTTTAGGAATAGGGTTTGTTTGGTTTTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGGATGTGGGCCTGTTTAGGAATAGGGTTTGTTTGGTTTTTTTT  287

seq1  GGGGGGTGGGGGGGAGAGGTGATTGCAGTCTTTGTTGTCAGGATATCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGGGGAGAGGTGATTGCAGTCTTTGTTGTCAGGATATCAGC  337

seq1  AGCTCAGTTCACACAAATCCGCAGTGGTAGCTCCATCCACTCACAGCCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTCACACAAATCCGCAGTGGTAGCTCCATCCACTCACAGCCAT  387

seq1  TATTCACAAACCAACAATGGCGGTTCCATCTGGCAGAATCCTGAAGGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAAACCAACAATGGCGGTTCCATCTGGCAGAATCCTGAAGGCTC  437

seq1  TGATAGTCAGCCTATGTCCACAAAAGTAATAGGAAGCAACTGGACTATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCAGCCTATGTCCACAAAAGTAATAGGAAGCAACTGGACTATCA  487

seq1  TGAGAAGTTGTTTGGTCCATTTCTCTCTGTAAACAATGATCTGTGAAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTGTTTGGTCCATTTCTCTCTGTAAACAATGATCTGTGAAGAA  537

seq1  GGCAAGGTGAACCAATGCCACAGCATCATCAGTAAAGACCAGCTCAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTGAACCAATGCCACAGCATCATCAGTAAAGACCAGCTCAGCAG  587

seq1  AGCCCAGAGAAGCAACACAGTGCCAGAGCAACTGTCTGTTGGGTTAATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGAAGCAACACAGTGCCAGAGCAACTGTCTGTTGGGTTAATCT  637

seq1  TCTACCTTTCCCAAGCATCACGTGTCCTCTCAAGCATCTGTTCCAGCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTCCCAAGCATCACGTGTCCTCTCAAGCATCTGTTCCAGCAAA  687

seq1  ACGTCACATGCGCTTTCACAAGACAGCTTCTAGAAAAGCACCACATGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACATGCGCTTTCACAAGACAGCTTCTAGAAAAGCACCACATGTCT  737

seq1  GTGATCAGCAAAGCGCCCTCTCACATGCCTGCGTCGTCAAAACATCCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGCAAAGCGCCCTCTCACATGCCTGCGTCGTCAAAACATCCTCT  787

seq1  CATAAGACAGCTTCCAGAAAAACATCACGTGACAGAACTGAGTCTCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACAGCTTCCAGAAAAACATCACGTGACAGAACTGAGTCTCCAAA  837

seq1  GAAACCAGAAATTTCCACTTCAACCATCTCTTGAAGTTGACGGGCTGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGAAATTTCCACTTCAACCATCTCTTGAAGTTGACGGGCTGTGA  887

seq1  CACAGTCCATGACTAAGAATGGTGCCTGAGTGATTGAAGACTACAGTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCATGACTAAGAATGGTGCCTGAGTGATTGAAGACTACAGTATC  937

seq1  TGATTCAAATCACTAGGAAAGTAAAATGGCAGGATCACAAGAGAGCATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAATCACTAGGAAAGTAAAATGGCAGGATCACAAGAGAGCATAG  987

seq1  CTACCCAAACAGACATCGTTCTATGACCACCAGATAATTAAAAAAAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAACAGACATCGTTCTATGACCACCAGATAATTAAAAAAAAAAA  1037

seq1  AAAAAAACTTTAAAGAGTTTAAAGCTTATTCTTAGTTAATCCTACTATGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTTTAAAGAGTTTAAAGCTTATTCTTAGTTAATCCTACTATGG  1087

seq1  AATTC  1104
      |||||
seq2  AATTC  1092