BAC Information

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BAC

Clone NameB6Ng01-324C02
Chromosome9 (Build37)15 (Build37)
Map Location 33,084,425 - 33,085,10229,674,899 - 29,675,981
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324C02.bB6Ng01-324C02.g
ACCGA112527GA112528
length1,1181,083
definitionB6Ng01-324C02.b B6Ng01-324C02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,084,425 - 33,085,102)(29,674,899 - 29,675,981)
sequence
gaattcattgaaaatgaataaaactcttacctgctttgttacaattaaaa
aaatcattacgatattacaacgttttcttctttatttaaagatcatacac
agacttcttccccaaagaataattttctttgttgcagttacaataaccag
tgcatagtcaagtaaaaatggcttcattagtttacatgaaataccttact
acttattattgacattgaggctctaagaccaggcagctatcctaagtgaa
ataaactatgatttttgtcaattgagcatatgcactggacacagaacgcc
acagagacagagcagcttggctgtgagcctgtgtgcaccaacatggatag
taagcctcagcacagccacgaaatgaccacaagtgttcgtctctgtcatt
aaagttattgattaacaaatcttctttctccaattccatagcattgataa
ttatatgtaaaacaaccctgagattccacctcacaccagtcagaatggct
aagatcaaaaattcaggtgacagcagatgctgcatagtactaccggagga
tcccgcaatacctctcctgggcatatatccagaagatgttccaaccggta
agaaggacacatgctccactatgttcatagcagccttatttataatatcc
agaagctggaaagaacccagatgcccctcaacagaggaatggatacagaa
aatgtggtacatttacacaatggagtactactcagctattaaaaagaatg
aatttatgaaattcctaggcaaatggatggacctggagggcatcatcctg
agtgaggtaacccaatcacaaaggaactcacacaatatgtactcactgat
aagtggatattagcccagagacttaggatacccaagatataagatacaat
ttgctaaacacatgaaacttaagaagaacgaagaccaaagtgtggacact
ttgtcccttcttagaattgggaacaaaacacccatgggaagagttacaga
gacaaagttggagctgtgacgaaagaatggaccatctagagactgccata
ttccgggatccatccatatcagcttccaatgctgaacacattgcatacac
tagccaagatttgctgaa

gaattctttcctagttaaccaaatgatatttgttttcaatgaagccaaaa
ataaaattctttgaaattcagaagtctatgccaaatcaaggtgtaaatta
catttatgtaccgcagtagagaaggcataaatcaagaagcttagagaata
ttacactctggacacagatggaaaataagctcaaaactgaagaagagaca
ctggcagagaaatctatgaccaaaggaaatgaagtcaattgaggaagttt
attaaggtaagtctagattataaatatgaacggttgtaggagattttaat
gagtagcatagaacctagaccctcagggatctttaatgtgaatggcacct
ggatcttcaagagaagcaccaggagtatggggacatggtggaaagttgaa
gtatacattgccctaaactagaggcaagcatacaatctaaagagaaatga
gtggttctattcattcaagtacaagtatgttcatgcatctgtcaattatt
tgttgatccatggtgcaaaacaggtgacaaaagccctgtggtctcactgg
gagggagtttatatcccagtgtgtgcagatgggtatttaccaaataacca
agttcaaacacagtgtacatcaacattataagtgttttattatcaaaggt
gagttttggggtttgctatttcagagatttattgaggctattttgacaga
cacttaacttaggataaatgggtccccaaagttctgatagctcttaggca
gtcagaagaagggcagttatgatcttacttcttaccttgttgtatggagg
ttgctatggatgctcagccgaaacactgaatgtacttctcaggatactta
caatgtaatagtttaaacagtagggcaattaagcaagatcggcccctcta
atttgagtggcatcactcatctgaggaaatgaatgaataaagagctgaat
tagaagaaatcacacacacacacaggcatgcatgcacactctcacatgca
tgcacatgtatgtgcaacacaaacattctgtgatttgactggagcccaca
gtcttctaccttgcattacaattactccgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33084425_33085102
seq2: B6Ng01-324C02.b_502_1161 (reverse)

seq1  TTCAGCAAAATCTT-GCTAGTGTGTGCATTGGTGTCAGCGTTTGGAAGCT  49
      |||||| ||||||| |||||||| |||| ||   |||||  |||||||||
seq2  TTCAGC-AAATCTTGGCTAGTGTATGCAATGTGTTCAGC-ATTGGAAGCT  48

seq1  GATTATGGGATGGATCCCCAGATATGGCCGTCTCTAGATGGTCCATCCTT  99
      || ||| |||||||||||   ||||||| ||||||||||||||||| |||
seq2  GA-TAT-GGATGGATCCCGGAATATGGCAGTCTCTAGATGGTCCATTCTT  96

seq1  TCGTCACAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTG  149
      ||||||||||||| ||||||||||||||||||| | ||||||||||||||
seq2  TCGTCACAGCTCC-AACTTTGTCTCTGTAACTCTTCCCATGGGTGTTTTG  145

seq1  TTCCCAATT-----------------------------------------  158
      |||||||||                                         
seq2  TTCCCAATTCTAAGAAGGGACAAAGTGTCCACACTTTGGTCTTCGTTCTT  195

seq1  -----------------------------------------------CTA  161
                                                     |||
seq2  CTTAAGTTTCATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCTA  245

seq1  AGTTTCTGGGCTAATATTCACTTATCAGTGAGTACATATTGTTTGAGTTC  211
      ||| ||||||||||||| |||||||||||||||||||||||| |||||||
seq2  AGTCTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTC  295

seq1  CTTTGTGATTGGCTTACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCA  261
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCA  345

seq1  TTTGCCGAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACT  311
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACT  395

seq1  CCATTGTGTAGATGCACCACATTTTTTGTATCCATTCCTCTGTTGAGGGG  361
      |||||||||| ||| |||||||||| ||||||||||||||||||||||||
seq2  CCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGG  445

seq1  CATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGACTGCTATGAA  411
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  CATCTGGGTTCTTTCCAGCTTCTGGATATTATAAATAAGGCTGCTATGAA  495

seq1  CATAGTGGAGCATGTGTCCTTCTTACTGGTTGGGACCTGTTCTGGATATA  461
      |||||||||||||||||||||||||| |||||| || | |||||||||||
seq2  CATAGTGGAGCATGTGTCCTTCTTACCGGTTGGAACATCTTCTGGATATA  545

seq1  TGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAGTACTATAACCAATTTT  511
      ||||||||||||||||||| ||||||||| ||||||||||          
seq2  TGCCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTAT----------  585

seq1  TTGAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATC  561
                                                        
seq2  --------------------------------------------------  585

seq1  CCAGCACCAATGGAGGAGTGTTTCTCTTTCTCCACATCCTCGCCAGCATC  611
                                                 |||||||
seq2  ------------------------------------------GCAGCATC  593

seq1  TGCTGTCACCTGAATTTTGTATCTTAGCCATTCTGACTGGTGTGAGGTGG  661
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGG  643

seq1  AATCTCAGGGTTGTTTT  678
      |||||||||||||||||
seq2  AATCTCAGGGTTGTTTT  660


seq1: chr15_29674899_29675981
seq2: B6Ng01-324C02.g_65_1147

seq1  GAATTCTTTCCTAGTTAACCAAATGATATTTGTTTTCAATGAAGCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTAGTTAACCAAATGATATTTGTTTTCAATGAAGCCAAAA  50

seq1  ATAAAATTCTTTGAAATTCAGAAGTCTATGCCAAATCAAGGTGTAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCTTTGAAATTCAGAAGTCTATGCCAAATCAAGGTGTAAATTA  100

seq1  CATTTATGTACCGCAGTAGAGAAGGCATAAATCAAGAAGCTTAGAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTACCGCAGTAGAGAAGGCATAAATCAAGAAGCTTAGAGAATA  150

seq1  TTACACTCTGGACACAGATGGAAAATAAGCTCAAAACTGAAGAAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCTGGACACAGATGGAAAATAAGCTCAAAACTGAAGAAGAGACA  200

seq1  CTGGCAGAGAAATCTATGACCAAAGGAAATGAAGTCAATTGAGGAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGAAATCTATGACCAAAGGAAATGAAGTCAATTGAGGAAGTTT  250

seq1  ATTAAGGTAAGTCTAGATTATAAATATGAACGGTTGTAGGAGATTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTAAGTCTAGATTATAAATATGAACGGTTGTAGGAGATTTTAAT  300

seq1  GAGTAGCATAGAACCTAGACCCTCAGGGATCTTTAATGTGAATGGCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCATAGAACCTAGACCCTCAGGGATCTTTAATGTGAATGGCACCT  350

seq1  GGATCTTCAAGAGAAGCACCAGGAGTATGGGGACATGGTGGAAAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCAAGAGAAGCACCAGGAGTATGGGGACATGGTGGAAAGTTGAA  400

seq1  GTATACATTGCCCTAAACTAGAGGCAAGCATACAATCTAAAGAGAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATTGCCCTAAACTAGAGGCAAGCATACAATCTAAAGAGAAATGA  450

seq1  GTGGTTCTATTCATTCAAGTACAAGTATGTTCATGCATCTGTCAATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTATTCATTCAAGTACAAGTATGTTCATGCATCTGTCAATTATT  500

seq1  TGTTGATCCATGGTGCAAAACAGGTGACAAAAGCCCTGTGGTCTCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATCCATGGTGCAAAACAGGTGACAAAAGCCCTGTGGTCTCACTGG  550

seq1  GAGGGAGTTTATATCCCAGTGTGTGCAGATGGGTATTTACCAAATAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTTTATATCCCAGTGTGTGCAGATGGGTATTTACCAAATAACCA  600

seq1  AGTTCAAACACAGTGTACATCAACATTATAAGTGTTTTATTATCAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAACACAGTGTACATCAACATTATAAGTGTTTTATTATCAAAGGT  650

seq1  GAGTTTTGGGGTTTGCTATTTCAGAGATTTATTGAGGCTATTTTGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGGGGTTTGCTATTTCAGAGATTTATTGAGGCTATTTTGACAGA  700

seq1  CACTTAACTTAGGATAAATGGGTCCCCAAAGTTCTGATAGCTCTTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACTTAGGATAAATGGGTCCCCAAAGTTCTGATAGCTCTTAGGCA  750

seq1  GTCAGAAGAAGGGCAGTTATGATCTTACTTCTTACCTTGTTGTATGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGAAGGGCAGTTATGATCTTACTTCTTACCTTGTTGTATGGAGG  800

seq1  TTGCTATGGATGCTCAGCCGAAACACTGAATGTACTTCTCAGGATACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGGATGCTCAGCCGAAACACTGAATGTACTTCTCAGGATACTTA  850

seq1  CAATGTAATAGTTTAAACAGTAGGGCAATTAAGCAAGATCGGCCCCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATAGTTTAAACAGTAGGGCAATTAAGCAAGATCGGCCCCTCTA  900

seq1  ATTTGAGTGGCATCACTCATCTGAGGAAATGAATGAATAAAGAGCTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTGGCATCACTCATCTGAGGAAATGAATGAATAAAGAGCTGAAT  950

seq1  TAGAAGAAATCACACACACACACAGGCATGCATGCACACTCTCACAATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGAAGAAATCACACACACACACAGGCATGCATGCACACTCTCAC-ATGC  999

seq1  ATGCACATGTATGTGC-ACACAAACA-TCTGTGATTTGAACTGAGCCCAC  1048
      |||||||||||||||| ||||||||| ||||||||||||   ||||||||
seq2  ATGCACATGTATGTGCAACACAAACATTCTGTGATTTGACTGGAGCCCAC  1049

seq1  AGTCTTCTACCTTTGCATTACAATTTACT-CGTGTG  1083
      ||||||||||| ||||||||||| ||||| ||||||
seq2  AGTCTTCTACC-TTGCATTACAA-TTACTCCGTGTG  1083


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