BAC Information

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BAC

Clone NameB6Ng01-324O06
Chromosome9 (Build37)
Map Location 106,729,913 - 106,870,624
singlet/doubletdoublet
Overlap geneVprbp, Armet, Dock3
Upstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324O06.bB6Ng01-324O06.g
ACCGA113090GA113091
length1,1261,136
definitionB6Ng01-324O06.b B6Ng01-324O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,869,518 - 106,870,624)(106,729,913 - 106,731,056)
sequence
gaattctcatcagtagttgcacgcattgtctaaagtgcttgctctgcagg
cataggatgatgtgcatttgcatccctagcatccacatcgaaacctcgca
caacagtgcatgtgtctgcaccccaacactgggagagaatggatggagga
ataggaaagatccaggaggcttgatggccagccattctggataaaattca
atgtccagggttagctgaagacttggtcttcaataataatgatgatattg
atggcaatgatgtagagaacaatagaagatgtctaatgtcgacttctgga
ctccacgtgtgttcacaccagctgtgtgcacctgcatacacgtgcaccac
acagaaatcacatagacacacagagtaaaattttataatatattttggag
aagggatagtgggaatctcttttgatgataattaaagccaccctacaaaa
tttgaaatgaatatgtgatgtctataaaagggtaatacaaacggtcctaa
aattctagtgactgagaagtagcctatagtgagaaggcatgttctacttt
tgtaaagctgtcagagatatattgattgagaatagagtctctcagatgga
ctgagaattacaacagactgaggaactagaaaaggccacagaaggggttt
gcagaaatcaagaaagcaaggtagagggtgtggaactttgccatttctca
aagttgatcatttctcagtgtcagtaaaggcatgatttctcttcactaca
ctgggggaaatcaaggaaaaccttttaactcagggcattcatctctatcc
tgtgtgtcaaaattaaaattaatgtgtctgcctgagattgaaatttgtgg
ctgatattagtaaaggcaaggccaaagccaccatccctgtgcaggtgagg
caggcaaggcctcacctcctaccaaagccattgtcctggattcccttcaa
cagtcccatgttggtgagtctacaagatcagccattagatcacttcctga
cgtgacttaagtgagttctgcttctgaacatctgctttagctgatgctaa
tggtggtcctctctcatgctcacttccaggaaggcagaatggtcatggaa
aggaggttaagagaatgtaatggtgg
gaattcctagtatcaaacatcaaaataaaccaagctttagggatatagtt
cagtaatattactgagttcttaacatgagcaaggccctggccctttactg
tcaagaacagaaaaagtgccaagtggaagaaagtgaaaacagtaaaaatt
aacaatgtgtgtgtgttccagaaggctcattgcttaagggcattccttca
ttgttttcctcctttttttttttttttttttttttaaatcaagatagggt
ttctctgcatagccctgtatccctggctatccttgaactctttgtagact
accttagcttcagactcagagatctacctgcctttgcctcccaagtgcca
gaactaaaggcgtgcatcctccacacctggcttgttctttttgagacaga
atctttatctttcagcatgtagtccttcctgactgtcctggaacttagac
agatggtcctgcttttgcctctgggattaaaggcatttgtgatagcgcat
ctggctttttttttttttaatttattttatttttttaaacctccattaaa
aatatgggaaaaaatggctgaagagatggctcagtggttaagagcactga
ctgttcttacaaaggtcctgagttcaattcccagcaactacttgatggct
cacaaccatctatattgggatccgatgccctcttctggtgtatctgaaga
cagacagctacaatgtatttgtagacatagaataaataattcttcaaaaa
atatgaaaaaaatgaaaagggctggattattcttacatggtaaagcagtt
tgtctagcatgcatgaagctctgagttcaagcctcagcactttttataac
ttactgtgatggttacatatctctattctagtacttgggagatagaggta
aggaggataaaaatcatggtaattctttgggtaccgagtttaaaatatcc
ctgtctcaaaaaaaaaggtaacctagtgtggtgactcatatgtgagagct
aagtcagcttggagctgcaagtggaaagctgtcttcccacttcccaagaa
tgttagattccaaccaattgcatttagtaaattccaatccatggcagcct
tcactttagtttcaagctaattatattgtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106869518_106870624
seq2: B6Ng01-324O06.b_48_1173 (reverse)

seq1  CCACCATCA---TCTCT--ACCTCC--TCCATGAC--ATCTGCC-TCCTG  40
      ||||||| |   |||||  ||||||  ||||||||   |||||| |||||
seq2  CCACCATTACATTCTCTTAACCTCCTTTCCATGACCATTCTGCCTTCCTG  50

seq1  G-AGTGAGCATGAGAGA-GACCACCATTAGCATCAGGCTAAGCAGATGTT  88
      | ||||||||||||||| ||||||||||||||||||   |||||||||||
seq2  GAAGTGAGCATGAGAGAGGACCACCATTAGCATCAGCTAAAGCAGATGTT  100

seq1  CAGGAGCAGAACTCAC-TAAGTCACGTCAGG-AGTGATCTAAT-GCTGAT  135
      ||| |||||||||||| |||||||||||||| ||||||||||| ||||||
seq2  CAGAAGCAGAACTCACTTAAGTCACGTCAGGAAGTGATCTAATGGCTGAT  150

seq1  CTTGTAGACTCACCAACAT-GGACTG-TGAAGGGAATCCAGGACAATGGC  183
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  CTTGTAGACTCACCAACATGGGACTGTTGAAGGGAATCCAGGACAATGGC  200

seq1  TTTGGTAGGAGGTGAGGCC-TGCCTGCCTCACCTGCACAGGGATGGTGGC  232
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGGTAGGAGGTGAGGCCTTGCCTGCCTCACCTGCACAGGGATGGTGGC  250

seq1  TTTGGCCTTGCCTTTACTAATATCAGCCACAAATTTCAATCTCAGGCAGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTTGCCTTTACTAATATCAGCCACAAATTTCAATCTCAGGCAGA  300

seq1  CACATTAATTTTAATTTTGACACACAGGATAGAGATGAATGCCCTGAGTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAATTTTAATTTTGACACACAGGATAGAGATGAATGCCCTGAGTT  350

seq1  AAAAGGTTTTCCTTGATTT-CCCCAGTGTAGTGAAGAGAAATCATGCCTT  381
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTCCTTGATTTCCCCCAGTGTAGTGAAGAGAAATCATGCCTT  400

seq1  TACTGACACTGAGAAATGATCAACTTTGAGAAATGGCAAAGTTCCACACC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACACTGAGAAATGATCAACTTTGAGAAATGGCAAAGTTCCACACC  450

seq1  CTCTACCTTGCTTTCTTGATTTCTGCAAACCCCTTCTGTGGCCTTTTCTA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTTGCTTTCTTGATTTCTGCAAACCCCTTCTGTGGCCTTTTCTA  500

seq1  GTTCCTCAGTCTGTTGTAATTCTCAGTCCATCTGAGAGACTCTATTCTCA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAGTCTGTTGTAATTCTCAGTCCATCTGAGAGACTCTATTCTCA  550

seq1  ATCAATATATCTCTGACAGCTTTACAAAAGTAGAACATGCCTTCTCACTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATATCTCTGACAGCTTTACAAAAGTAGAACATGCCTTCTCACTA  600

seq1  TAGGCTACTTCTCAGTCACTAGAATTTTAGGACCGTTTGTATTACCCTTT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACTTCTCAGTCACTAGAATTTTAGGACCGTTTGTATTACCCTTT  650

seq1  TATAGACATCACATATTCATTTCAAATTTTGTAGGGTGGCTTTAATTATC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATCACATATTCATTTCAAATTTTGTAGGGTGGCTTTAATTATC  700

seq1  ATCAAAAGAGATTCCCACTATCCCTTCTCCAAAATATATTATAAAATTTT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGAGATTCCCACTATCCCTTCTCCAAAATATATTATAAAATTTT  750

seq1  ACTCTGTGTGTCTATGTGATTTCTGTGTGGTGCACGTGTATGCAGGTGCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTGTCTATGTGATTTCTGTGTGGTGCACGTGTATGCAGGTGCA  800

seq1  CACAGCTGGTGTGAACACACGTGGAGTCCAGAAGTCGACATTAGACATCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGTGTGAACACACGTGGAGTCCAGAAGTCGACATTAGACATCT  850

seq1  TCTATTGTTCTCTACATCATTGCCATCAATATCATCATTATTATTGAAGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTCTCTACATCATTGCCATCAATATCATCATTATTATTGAAGA  900

seq1  CCAAGTCTTCAGCTAACCCTGGACATTGAATTTTATCCAGAATGGCTGGC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTTCAGCTAACCCTGGACATTGAATTTTATCCAGAATGGCTGGC  950

seq1  CATCAAGCCTCCTGGATCTTTCCTATTCCTCCATCCATTCTCTCCCAGTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCCTCCTGGATCTTTCCTATTCCTCCATCCATTCTCTCCCAGTG  1000

seq1  TTGGGGTGCAGACACATGCACTGTTGTGCGAGGTTTCGATGTGGATGCTA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGCAGACACATGCACTGTTGTGCGAGGTTTCGATGTGGATGCTA  1050

seq1  GGGATGCAAATGCACATCATCCTATGCCTGCAGAGCAAGCACTTTAGACA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCAAATGCACATCATCCTATGCCTGCAGAGCAAGCACTTTAGACA  1100

seq1  ATGCGTGCAACTACTGATGAGAATTC  1107
      ||||||||||||||||||||||||||
seq2  ATGCGTGCAACTACTGATGAGAATTC  1126

seq1: chr9_106729913_106731056
seq2: B6Ng01-324O06.g_67_1202

seq1  GAATTCCTAGTATCAAACATCAAAATAAACCAAGCTTTAGGGATATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTATCAAACATCAAAATAAACCAAGCTTTAGGGATATAGTT  50

seq1  CAGTAATATTACTGAGTTCTTAACATGAGCAAGGCCCTGGCCCTTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATTACTGAGTTCTTAACATGAGCAAGGCCCTGGCCCTTTACTG  100

seq1  TCAAGAACAGAAAAAGTGCCAAGTGGAAGAAAGTGAAAACAGTAAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACAGAAAAAGTGCCAAGTGGAAGAAAGTGAAAACAGTAAAAATT  150

seq1  AACAATGTGTGTGTGTTCCAGAAGGCTCATTGCTTAAGGGCATTCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTGTGTGTTCCAGAAGGCTCATTGCTTAAGGGCATTCCTTCA  200

seq1  TTGTTTTCCTCCTTTTTTTTTTTTTTTTTTTTTTTAAATCAAGATAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCTCCTTTTTTTTTTTTTTTTTTTTTTTAAATCAAGATAGGGT  250

seq1  TTCTCTGCATAGCCCTGTATCCCTGGCTATCCTTGAACTCTTTGTAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCATAGCCCTGTATCCCTGGCTATCCTTGAACTCTTTGTAGACT  300

seq1  ACCTTAGCTTCAGACTCAGAGATCTACCTGCCTTTGCCTCCCAAGTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGCTTCAGACTCAGAGATCTACCTGCCTTTGCCTCCCAAGTGCCA  350

seq1  GAACTAAAGGCGTGCATCCTCCACACCTGGCTTGTTCTTTTTGAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGGCGTGCATCCTCCACACCTGGCTTGTTCTTTTTGAGACAGA  400

seq1  ATCTTTATCTTTCAGCATGTAGTCCTTCCTGACTGTCCTGGAACTTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCTTTCAGCATGTAGTCCTTCCTGACTGTCCTGGAACTTAGAC  450

seq1  AGATGGTCCTGCTTTTGCCTCTGGGATTAAAGGCATTTGTGATAGCGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCCTGCTTTTGCCTCTGGGATTAAAGGCATTTGTGATAGCGCAT  500

seq1  CTGGCTTTTTTTTTTTTTAATTTATTTTATTTTTTTAAACCTCCATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTTTTTTTTTTTAATTTATTTTATTTTTTTAAACCTCCATTAAA  550

seq1  AATATGGGAAAAAATGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGAAAAAATGGCTGAAGAGATGGCTCAGTGGTTAAGAGCACTGA  600

seq1  CTGTTCTTACAAAGGTCCTGAGTTCAATTCCCAGCAACTACTTGATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTACAAAGGTCCTGAGTTCAATTCCCAGCAACTACTTGATGGCT  650

seq1  CACAACCATCTATATTGGGATCCGATGCCCTCTTCTGGTGTATCTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTATATTGGGATCCGATGCCCTCTTCTGGTGTATCTGAAGA  700

seq1  CAGACAGCTACAATGTATTTGTAGACATAGAATAAATAATTCTTCAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCTACAATGTATTTGTAGACATAGAATAAATAATTCTTCAAAAA  750

seq1  ATATGAAAAAAATGAAAAGGGCTGGATTATTCTTACATGGTAGAGCAG-T  799
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  ATATGAAAAAAATGAAAAGGGCTGGATTATTCTTACATGGTAAAGCAGTT  800

seq1  TGTCTAGCATGCATGAAGCTCTGAGTTCAAGCCTCAGCAC-TTTTATAAC  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTCTAGCATGCATGAAGCTCTGAGTTCAAGCCTCAGCACTTTTTATAAC  850

seq1  TTACTGTGATGGTTACATATCTCTAATTCTAGTACTTGGGAGATAGAGGT  898
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTACTGTGATGGTTACATATCTCT-ATTCTAGTACTTGGGAGATAGAGGT  899

seq1  -AGGAGGATAAAAAATCAAGGTAATTC-TTGGGTACCGAGTTTAAAATTA  946
       |||||||| |||||||| |||||||| ||||||||||||||||||||  
seq2  AAGGAGGAT-AAAAATCATGGTAATTCTTTGGGTACCGAGTTTAAAATAT  948

seq1  TCCTGTCTCAAAAAAAAAAGTAACCTAGTGTGGTGACTTCATA-GTGAGA  995
       ||||||||||||||||| |||||||||||||||||| ||||| ||||||
seq2  CCCTGTCTCAAAAAAAAAGGTAACCTAGTGTGGTGAC-TCATATGTGAGA  997

seq1  GCTAGGTCAGC-TGGAGCTGCAAGTGAAAGCCTGTCTCCCCACTTCCCAA  1044
      |||| |||||| |||||||||||||| ||  |||||| ||||||||||||
seq2  GCTAAGTCAGCTTGGAGCTGCAAGTGGAAAGCTGTCTTCCCACTTCCCAA  1047

seq1  GATTG-TAGATTCACAACCCAGTGGCATTTAGTAAATTCACAATGCATTG  1093
      || || ||||||| ||| ||| | ||||||||||||||| |||| ||| |
seq2  GAATGTTAGATTC-CAA-CCAATTGCATTTAGTAAATTC-CAATCCATGG  1094

seq1  CAGCC-TCACCTTTTTAGTTTCAAGCCTTTATTTATTTATTTTGTTTTTT  1142
      ||||| ||||   |||||||||||||       || |||| |||||||||
seq2  CAGCCTTCAC---TTTAGTTTCAAGC-------TAATTATATTGTTTTTT  1134

seq1  TT  1144
      ||
seq2  TT  1136