BAC Information

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BAC

Clone NameB6Ng01-324P12
Chromosome9 (Build37)
Map Location 57,375,921 - 57,500,810
singlet/doubletdoublet
Overlap geneCox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk
Upstream geneLOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25
Downstream geneCyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324P12.bB6Ng01-324P12.g
ACCGA113146GA113147
length1,1451,095
definitionB6Ng01-324P12.b B6Ng01-324P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,375,921 - 57,377,059)(57,499,716 - 57,500,810)
sequence
gaattcatgtgaatatactcatgcacaaacattgcacaaacacataatta
aaacttactgttgagtgtggctgcagatgtgtgcgtgccataatgttcat
atggcggtcagaggacagcttcattggctcttacctttctgcctttatgt
gggttctaggaatcactcaggtctttagatttatgtggcaattgctttta
ttcactgaggaatctcgcaggcctgagacagggtttttgctaagcagccc
aggctgagctcacttttcttgcttaaatttccagaatgttggaattatag
gaatgtgccatcacacctagatatataatactatatgttttactctggtt
agtatttaagatttgttttctttttgagacactcttactctacaacccag
attgtgcttagaattcacttacagagccgggcacggtggcgcatgccttt
aatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggcc
agcctaatctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcgaaaaaccaaaaaggaaaattaaaaaaaaagaagaagaaga
attcacttacagtgcaggctgaccttgaaatcagcacaggcaacacagca
aaatctgtctcaaaaatgaacaaaaagacaagttactgcactagaaaaca
tgtgtcaaacagtctgtacattttgcccccttctgctgttttctactctt
ctttttgccaatgaatgcattagggacaggataatagcattcacagttga
gtggtcttccactattgacgtcattgctcttttcctttgtagctgtctgt
tccattcgctgctattctcatgggtcacacgagacagatgaggagtttga
tgctcgctgggtgacatatttcaacaagccagacattgatgcctgggaat
tgcgtaaaggtaattgggaacatagatgtatcatattttgcatgtataaa
catgaactattcttaaaagcaaaccacattgtatgtttgaaaacatgttg
tgtgagtggtgactgtcacagcctcgtagtaagaaaaagccttgcaactt
ctatatgtttcctataaagtggtgagttttaacctagaacagcag
gaattcatctaactgccagtgagtgcggaaacaccaggctaagccacact
ccaccaggcctctcagagcagctactcttagatctttagaaataggtccc
taaggctgagaaaggctcgaggacggttgggccaccaaaagggctcagag
ggtaaaggtgcttgctgccaagccttattacttgaattctatccctggac
acatagcagagggagagaaccaactctcaaagttattcactcaaatgcct
ctcctctcacctctaaaactaaatgaataaatgtaattttttgtttttaa
ggcttggcgttggcctagggatgtggctcagaagcggagcacatgactag
catgcaaaagagcctgggttccatcccctattttgcagaaacttacattg
aaaggtcacagagccaggcaggggaaaagtcagcagggtaagtaggaagc
tgttaaaacagaactacaagcacgtcatcctccgaccttcctctctgcca
gagacctgatgaccctctgagttcatactctcttcagtttccttttctgc
aaaaatggggcttagaaataatcctgcatcaggaggttcaaccgtaaaaa
ccaaagcgcttgaccgggacgtgacccagtcagcagagtgcttgcctcga
atgcaggaaaccctgggtgtgatccccagaccacataacactgggcatag
tgacccatacctgtaatccagacccttgggaggtaggggcaggaggatca
gaaatttaaggccatccccggtaacgtagagaacagtcaagaccaatctg
acaaacatagagcctatcccaaaaacacataaacaaatattacccatcat
catgatcaccatcaacaacaataagtcgtctgacagatagtgatgcagaa
taaaataaaatgagcgtcccttggtctccagggaggaggtgcagtggggt
aactggcagcctccacttatgaatgaggagtcaataacctgcgacaccac
atctaacccttagaatacgaaagtggggaaactgaagaccagaggaagaa
agtctaactccaagtcaaagcaagttcaatcccagaactgatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_57375921_57377059
seq2: B6Ng01-324P12.b_49_1193

seq1  GAATTCATGTGAATATACTCATGCACAAACATTGCACAAACACATAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGAATATACTCATGCACAAACATTGCACAAACACATAATTA  50

seq1  AAACTTACTGTTGAGTGTGGCTGCAGATGTGTGCGTGCCATAATGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTGTTGAGTGTGGCTGCAGATGTGTGCGTGCCATAATGTTCAT  100

seq1  ATGGCGGTCAGAGGACAGCTTCATTGGCTCTTACCTTTCTGCCTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGTCAGAGGACAGCTTCATTGGCTCTTACCTTTCTGCCTTTATGT  150

seq1  GGGTTCTAGGAATCACTCAGGTCTTTAGATTTATGTGGCAATTGCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAGGAATCACTCAGGTCTTTAGATTTATGTGGCAATTGCTTTTA  200

seq1  TTCACTGAGGAATCTCGCAGGCCTGAGACAGGGTTTTTGCTAAGCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAGGAATCTCGCAGGCCTGAGACAGGGTTTTTGCTAAGCAGCCC  250

seq1  AGGCTGAGCTCACTTTTCTTGCTTAAATTTCCAGAATGTTGGAATTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGCTCACTTTTCTTGCTTAAATTTCCAGAATGTTGGAATTATAG  300

seq1  GAATGTGCCATCACACCTAGATATATAATACTATATGTTTTACTCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCATCACACCTAGATATATAATACTATATGTTTTACTCTGGTT  350

seq1  AGTATTTAAGATTTGTTTTCTTTTTGAGACACTCTTACTCTACAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAGATTTGTTTTCTTTTTGAGACACTCTTACTCTACAACCCAG  400

seq1  ATTGTGCTTAGAATTCACTTACAGAGCCGGGCACGGTGGCGCATGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTTAGAATTCACTTACAGAGCCGGGCACGGTGGCGCATGCCTTT  450

seq1  AATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCC  500

seq1  AGCCTAATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  550

seq1  CCCTGTCTCGAAAAACCAAAAAGGAAAATTAAAAAAAAAGAAGAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAACCAAAAAGGAAAATTAAAAAAAAAGAAGAAGAAGA  600

seq1  ATTCACTTACAGTGCAGGCTGACCTTGAAATCAGCACAGGCAACACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTACAGTGCAGGCTGACCTTGAAATCAGCACAGGCAACACAGCA  650

seq1  AAATCTGTCTCAAAAATGAACAAAAAGACAAGTTACTGCACTAGAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTCTCAAAAATGAACAAAAAGACAAGTTACTGCACTAGAAAACA  700

seq1  TGTGTCAAACAGTCTGTACATTTTGCCCCCTTCTGCTGTTTTCTACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAACAGTCTGTACATTTTGCCCCCTTCTGCTGTTTTCTACTCTT  750

seq1  CTTTTTGCCAATGAATGCATTAGGGACAGGATAATAGCATTCACAGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCCAATGAATGCATTAGGGACAGGATAATAGCATTCACAGTTGA  800

seq1  GTGGTCTTCCACTATTGACGTCATTGCTCTTTTCCTTTGTAGCTGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTCCACTATTGACGTCATTGCTCTTTTCCTTTGTAGCTGTCTGT  850

seq1  TCCATTCGCTGCTATTCTCATGGGTCACACGAGACAGATGAGGAGTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCGCTGCTATTCTCATGGGTCACACGAGACAGATGAGGAGTTTGA  900

seq1  TGCTCGCTGGGTGACATATTTCAACAAGCCAGACATTGATGCCTGGGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGCTGGGTGACATATTTCAACAAGCCAGACATTGATGCCTGGGAAT  950

seq1  TGCGTAAAGGTAATT-GGAACATAGATGTATCATA-TTTGCATGTATAAA  998
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TGCGTAAAGGTAATTGGGAACATAGATGTATCATATTTTGCATGTATAAA  1000

seq1  CATGAACTATTCTTAAAAGCAAA-CACATTGTATGTTTGAAAACATGTTG  1047
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGAACTATTCTTAAAAGCAAACCACATTGTATGTTTGAAAACATGTTG  1050

seq1  TGTGAGTTGGTGACTGTCACAG-CTCGTAGTTAG-AAAAGCC-TGCAACT  1094
      |||||| ||||||||||||||| |||||||| || ||||||| |||||||
seq2  TGTGAG-TGGTGACTGTCACAGCCTCGTAGTAAGAAAAAGCCTTGCAACT  1099

seq1  TCTATAATGTTTCCTATAAAGT-GTGAGTTTTAAACTAG-ACAGCAG  1139
      ||||| |||||||||||||||| ||||||||||| |||| |||||||
seq2  TCTAT-ATGTTTCCTATAAAGTGGTGAGTTTTAACCTAGAACAGCAG  1145

seq1: chr9_57499716_57500810
seq2: B6Ng01-324P12.g_66_1160 (reverse)

seq1  GAGATCCAGGTTCTGGGGATGGACCTTGCTTTTGACTTGGAGTTAGACTT  50
      ||||||   ||||| ||||| || ||||| ||||||||||||||||||||
seq2  GAGATC--AGTTCT-GGGATTGAACTTGC-TTTGACTTGGAGTTAGACTT  46

seq1  TC-TCCTCTGGGTCTCAGTTTCCCCACTTTCGTA-TCTAAGGGTTAGATG  98
      || ||||||||   |||||||||||||||||||| |||||||||||||||
seq2  TCTTCCTCTGGTCTTCAGTTTCCCCACTTTCGTATTCTAAGGGTTAGATG  96

seq1  TGGTGGTCCGCA-GTTA-TGACTCCTCATTCATAAGTGGAGGCTGCCAGT  146
      |||||   |||| |||| ||||||||||||||||||||||||||||||||
seq2  TGGTG--TCGCAGGTTATTGACTCCTCATTCATAAGTGGAGGCTGCCAGT  144

seq1  TA-CCCACTGCACCTCCTCCCTGGAGACCAAGGGACGCTCATTTTA-TTT  194
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACCCCACTGCACCTCCTCCCTGGAGACCAAGGGACGCTCATTTTATTTT  194

seq1  ATTCTGCATCACTATCTGTCAGACGACTTATTGTTGTTGATGGTGATCAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATCACTATCTGTCAGACGACTTATTGTTGTTGATGGTGATCAT  244

seq1  GATGATGGGTAATATTTGTTTATGTGTTTTTGGGATAGGCTCTATGTTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGGTAATATTTGTTTATGTGTTTTTGGGATAGGCTCTATGTTTG  294

seq1  TCAGATTGGTCTTGACTGTTCTCTACGTTACCGGGGATGGCCTTAAATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGTCTTGACTGTTCTCTACGTTACCGGGGATGGCCTTAAATTT  344

seq1  CTGATCCTCCTGCCCCTACCTCCCAAGGGTCTGGATTACAGGTATGGGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCCTGCCCCTACCTCCCAAGGGTCTGGATTACAGGTATGGGTC  394

seq1  ACTATGCCCAGTGTTATGTGGTCTGGGGATCACACCCAGGGTTTCCTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCCAGTGTTATGTGGTCTGGGGATCACACCCAGGGTTTCCTGCA  444

seq1  TTCGAGGCAAGCACTCTGCTGACTGGGTCACGTCCCGGTCAAGCGCTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCAAGCACTCTGCTGACTGGGTCACGTCCCGGTCAAGCGCTTTG  494

seq1  GTTTTTACGGTTGAACCTCCTGATGCAGGATTATTTCTAAGCCCCATTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACGGTTGAACCTCCTGATGCAGGATTATTTCTAAGCCCCATTTT  544

seq1  TGCAGAAAAGGAAACTGAAGAGAGTATGAACTCAGAGGGTCATCAGGTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGGAAACTGAAGAGAGTATGAACTCAGAGGGTCATCAGGTCT  594

seq1  CTGGCAGAGAGGAAGGTCGGAGGATGACGTGCTTGTAGTTCTGTTTTAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGAGGAAGGTCGGAGGATGACGTGCTTGTAGTTCTGTTTTAAC  644

seq1  AGCTTCCTACTTACCCTGCTGACTTTTCCCCTGCCTGGCTCTGTGACCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTACTTACCCTGCTGACTTTTCCCCTGCCTGGCTCTGTGACCTT  694

seq1  TCAATGTAAGTTTCTGCAAAATAGGGGATGGAACCCAGGCTCTTTTGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAAGTTTCTGCAAAATAGGGGATGGAACCCAGGCTCTTTTGCAT  744

seq1  GCTAGTCATGTGCTCCGCTTCTGAGCCACATCCCTAGGCCAACGCCAAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCATGTGCTCCGCTTCTGAGCCACATCCCTAGGCCAACGCCAAGC  794

seq1  CTTAAAAACAAAAAATTACATTTATTCATTTAGTTTTAGAGGTGAGAGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACAAAAAATTACATTTATTCATTTAGTTTTAGAGGTGAGAGGA  844

seq1  GAGGCATTTGAGTGAATAACTTTGAGAGTTGGTTCTCTCCCTCTGCTATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTTGAGTGAATAACTTTGAGAGTTGGTTCTCTCCCTCTGCTATG  894

seq1  TGTCCAGGGATAGAATTCAAGTAATAAGGCTTGGCAGCAAGCACCTTTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGATAGAATTCAAGTAATAAGGCTTGGCAGCAAGCACCTTTAC  944

seq1  CCTCTGAGCCCTTTTGGTGGCCCAACCGTCCTCGAGCCTTTCTCAGCCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCCCTTTTGGTGGCCCAACCGTCCTCGAGCCTTTCTCAGCCTT  994

seq1  AGGGACCTATTTCTAAAGATCTAAGAGTAGCTGCTCTGAGAGGCCTGGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTATTTCTAAAGATCTAAGAGTAGCTGCTCTGAGAGGCCTGGTG  1044

seq1  GAGTGTGGCTTAGCCTGGTGTTTCCGCACTCACTGGCAGTTAGATGAATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGCTTAGCCTGGTGTTTCCGCACTCACTGGCAGTTAGATGAATT  1094

seq1  C  1095
      |
seq2  C  1095