BAC Information

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BAC

Clone NameB6Ng01-325D20
Chromosome9 (Build37)
Map Location 71,188,017 - 71,343,244
singlet/doubletdoublet
Overlap geneGrinl1a
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
Downstream geneAA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325D20.bB6Ng01-325D20.g
ACCGA113349GA113350
length1,034996
definitionB6Ng01-325D20.b B6Ng01-325D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,342,222 - 71,343,244)(71,188,017 - 71,189,022)
sequence
gaattctaggtgatggaaaacattatccaggaccgtaagacacggacggc
catgggagtatgacaaagctgataaacctggaacttaatcagcgctggag
gagtatttatttaaaggagatacctgcttcctggttttaaaacataccaa
gtatttcttctcaatgtttatgagcttaaacagatgcagatgttgccaaa
gaatgtattataacattagccatcttggaagtgtgcagtttgagcattgg
gaagcctgttggaagatggctccacaccttcttcgaaagtgaagaaactt
aggctgagagtaattcatggacttaactgataccaagtggtatgcagacc
cttctccctgaagtcctagttgtagattgtttttgccctgttatagtctc
tcttctctctctccctctctccccctgctgtgtatgtgcacatctatcca
tctatctgcttgtctgtctgtctgggtttggatgtcagaggactactgta
gaattgggtctctcatccacctatatgtgggtcccagggattaaactcag
gccaccaggcttatattcaagagtctttacccactgagccatcttcctgg
cctgccattgactaactaactttctcaggactgccttcagtctcctatct
ggattaccttgtgtcacgtgtctcctgtttggtgggttattgtttgtttt
ctgttttctgttctctctctctctctctctctctctctctctctctctct
ctccataacaaccctcctcactataaacttcacaggcatcccatccatgc
ctcctcctcgtttttcaacctttggttgtcactgttcagagctttttgtt
ttttcagtgaaaggtgaccagacgggattcttggccaggtctggtgagag
gatggaagtagtctgttttttcctactctaggttctggtacacagtgtct
ttacttcactacgcctctgatctcccaccaccgaggaattgaagttaact
tggaagagatggtagatgttgatttgagatgtgt
gaattcctctcgatcttgttcagagcagcagaagtacaaggtagagtcag
gatttgctgtccccaccccccccttttttttttttgcacagctcctgcag
gctgtggagctggaagtcttctggtacctccctggggacacttctaaaac
cagctgagttatagctgagcgagaggcagagcagaggaggtacagaaaga
gcaggaagtaaatgccaaaggacttcgctatcagtcggggtctagtttct
cctgagggtgttgaaagtgttgccttccttcctttcaccatcaccaggac
accagcacagaacaagcaagcaggtgcggttagtttgaaggccagccaag
aaggccagggctgagggtgccaggtaactctttctttgggctcaggaagc
aacatctgtgaaagtggaacaaacagggtaagtctggaaattggaaaaat
tctgcagtgggaaggactggatacagaaccaagctgagaaggagacccta
gtccctgcaggaagggggcagaaaaggggagactgtgggtcccttctctg
acagccagattaattttaagtctaaacaacaaaattttactatgtctcat
gcaacatctgggacatactcatgctataataataataataataacaacaa
caacaataacaacagcaacaacaacctttttatctgaaattcaagtttaa
ttgagcaccttggatttcattggctaaattggcaactttgcccctgcccc
atctccaacctcctggcttttctagaccttcaattctcttgctccacagt
tggatcaggggttatgtgaggctcttacaagacaagaaaggtcatttaga
agcagacagcttatttgggaatgaactagctactgaaggtctgtgggccc
acaggtgatccccccactttggagaggaatgccatacaggaaatgcagta
ctcgcggccgcctctttaggttttttttttgtttttgttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71342222_71343244
seq2: B6Ng01-325D20.b_46_1079 (reverse)

seq1  ACACATCTCCAA-CCACATC-GCCATCTCT--CCAGCTCACATCTGTTCC  46
      ||||||||| || | |||||  ||||||||  | || | || ||  ||||
seq2  ACACATCTCAAATCAACATCTACCATCTCTTCCAAGTTAACTTCAATTCC  50

seq1  TCTGTGGTTGGAGATCAGAGGC-TAGTGAAATAAAGACACTGGTGACCCA  95
      || ||||| ||||||||||||| ||||||| |||||||||| |||  |||
seq2  TCGGTGGTGGGAGATCAGAGGCGTAGTGAAGTAAAGACACT-GTGTACCA  99

seq1  GAGCCTAGAGTAGGAGAAAACAGACTAC-TCCATCCTCTCACCAGACCTG  144
      || |||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GAACCTAGAGTAGGAAAAAACAGACTACTTCCATCCTCTCACCAGACCTG  149

seq1  GCC-AGAATCCTGTCTGGTCACC-TTCACTGAAAAA--CAAAAGCTCTGA  190
      ||| ||||||| ||||||||||| ||||||||||||   |||||||||||
seq2  GCCAAGAATCCCGTCTGGTCACCTTTCACTGAAAAAACAAAAAGCTCTGA  199

seq1  ACAGTGACAACCAAAGGTTG-AAAACGAGGAGGA-GCATGGATGGGATGC  238
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  ACAGTGACAACCAAAGGTTGAAAAACGAGGAGGAGGCATGGATGGGATGC  249

seq1  CTGTGAAGTTTATAGTGAGGAGGGTTGTTATGGAGAGAGAGAGAGAGAGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGTTTATAGTGAGGAGGGTTGTTATGGAGAGAGAGAGAGAGAGA  299

seq1  GAGAGAGAGAGAGAGAGAGAGAGAACAGAAAACAGAAAACAAACAATAAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAACAGAAAACAGAAAACAAACAATAAC  349

seq1  CCACCAAACAGGAGACACGTGACACAAGGTAATCCAGATAGGAGACTGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACAGGAGACACGTGACACAAGGTAATCCAGATAGGAGACTGAA  399

seq1  GGCAGTCCTGAGAAAGTTAGTTAGTCAATGGCAGGCCAGGAAGATGGCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCCTGAGAAAGTTAGTTAGTCAATGGCAGGCCAGGAAGATGGCTC  449

seq1  AGTGGGTAAAGACTCTTGAATATAAGCCTGGTGGCCTGAGTTTAATCCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAAGACTCTTGAATATAAGCCTGGTGGCCTGAGTTTAATCCCT  499

seq1  GGGACCCACATATAGGTGGATGAGAGACCCAATTCTACAGTAGTCCTCTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCACATATAGGTGGATGAGAGACCCAATTCTACAGTAGTCCTCTG  549

seq1  ACATCCAAACCCAGACAGACAGACAAGCAGATAGATGGATAGATGTGCAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAACCCAGACAGACAGACAAGCAGATAGATGGATAGATGTGCAC  599

seq1  ATACACAGCAGGGGGAGAGAGGGAGAGAGAGAAGAGAGACTATAACAGGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGCAGGGGGAGAGAGGGAGAGAGAGAAGAGAGACTATAACAGGG  649

seq1  CAAAAACAATCTACAACTAGGACTTCAGGGAGAAGGGTCTGCATACCACT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAATCTACAACTAGGACTTCAGGGAGAAGGGTCTGCATACCACT  699

seq1  TGGTATCAGTTAAGTCCATGAATTACTCTCAGCCTAAGTTTCTTCACTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAGTTAAGTCCATGAATTACTCTCAGCCTAAGTTTCTTCACTTT  749

seq1  CGAAGAAGGTGTGGAGCCATCTTCCAACAGGCTTCCCAATGCTCAAACTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAAGGTGTGGAGCCATCTTCCAACAGGCTTCCCAATGCTCAAACTG  799

seq1  CACACTTCCAAGATGGCTAATGTTATAATACATTCTTTGGCAACATCTGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCAAGATGGCTAATGTTATAATACATTCTTTGGCAACATCTGC  849

seq1  ATCTGTTTAAGCTCATAAACATTGAGAAGAAATACTTGGTATGTTTTAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTAAGCTCATAAACATTGAGAAGAAATACTTGGTATGTTTTAAA  899

seq1  ACCAGGAAGCAGGTATCTCCTTTAAATAAATACTCCTCCAGCGCTGATTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGCAGGTATCTCCTTTAAATAAATACTCCTCCAGCGCTGATTA  949

seq1  AGTTCCAGGTTTATCAGCTTTGTCATACTCCCATGGCCGTCCGTGTCTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGTTTATCAGCTTTGTCATACTCCCATGGCCGTCCGTGTCTTA  999

seq1  CGGTCCTGGATAATGTTTTCCATCACCTAGAATTC  1023
      |||||||||||||||||||||||||||||||||||
seq2  CGGTCCTGGATAATGTTTTCCATCACCTAGAATTC  1034

seq1: chr9_71188017_71189022
seq2: B6Ng01-325D20.g_67_1062

seq1  GAATTCCTCTCGATCTTGTTCAGAGCAGCAGAAGTACAAGGTAGAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCGATCTTGTTCAGAGCAGCAGAAGTACAAGGTAGAGTCAG  50

seq1  GATTTGCTGTCCCCACCCCCCCCTTTTTTTTTTTTGCACAGCTCCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTGTCCCCACCCCCCCCTTTTTTTTTTTTGCACAGCTCCTGCAG  100

seq1  GCTGTGGAGCTGGAAGTCTTCTGGTACCTCCCTGGGGACACTTCTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAGCTGGAAGTCTTCTGGTACCTCCCTGGGGACACTTCTAAAAC  150

seq1  CAGCTGAGTTATAGCTGAGCGAGAGGCAGAGCAGAGGAGGTACAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGTTATAGCTGAGCGAGAGGCAGAGCAGAGGAGGTACAGAAAGA  200

seq1  GCAGGAAGTAAATGCCAAAGGACTTCGCTATCAGTCGGGGTCTAGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGTAAATGCCAAAGGACTTCGCTATCAGTCGGGGTCTAGTTTCT  250

seq1  CCTGAGGGTGTTGAAAGTGTTGCCTTCCTTCCTTTCACCATCACCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGTGTTGAAAGTGTTGCCTTCCTTCCTTTCACCATCACCAGGAC  300

seq1  ACCAGCACAGAACAAGCAAGCAGGTGCGGTTAGTTTGAAGGCCAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACAGAACAAGCAAGCAGGTGCGGTTAGTTTGAAGGCCAGCCAAG  350

seq1  AAGGCCAGGGCTGAGGGTGCCAGGTAACTCTTTCTTTGGGCTCAGGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGGCTGAGGGTGCCAGGTAACTCTTTCTTTGGGCTCAGGAAGC  400

seq1  AACATCTGTGAAAGTGGAACAAACAGGGTAAGTCTGGAAATTGGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTGAAAGTGGAACAAACAGGGTAAGTCTGGAAATTGGAAAAAT  450

seq1  TCTGCAGTGGGAAGGACTGGATACAGAACCAAGCTGAGAAGGAGACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTGGGAAGGACTGGATACAGAACCAAGCTGAGAAGGAGACCCTA  500

seq1  GTCCCTGCAGGAAGGGGGCAGAAAAGGGGAGACTGTGGGTCCCTTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCAGGAAGGGGGCAGAAAAGGGGAGACTGTGGGTCCCTTCTCTG  550

seq1  ACAGCCAGATTAATTTTAAGTCTAAACAACAAAATTTTACTATGTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGATTAATTTTAAGTCTAAACAACAAAATTTTACTATGTCTCAT  600

seq1  GCAACATCTGGGACATACTCATGCTATAATAATAATAATAATAACAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCTGGGACATACTCATGCTATAATAATAATAATAATAACAACAA  650

seq1  CAACAATAACAACAGCAACAACAACCTTTTTATCTGAAATTCAAGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAACAACAGCAACAACAACCTTTTTATCTGAAATTCAAGTTTAA  700

seq1  TTGAGCACCTTGGATTTCATTGGCTAAATTGGCAACTTTGCCCCTGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACCTTGGATTTCATTGGCTAAATTGGCAACTTTGCCCCTGCCCC  750

seq1  ATCTCCAACCTCCTGGCTTTTCTAGACCTTCAATTCTCTTGCTCCACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAACCTCCTGGCTTTTCTAGACCTTCAATTCTCTTGCTCCACAGT  800

seq1  TGGATCAGGGGTTATGTGAGGCTCTTACAAGACAAGAAAGGTCATTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGATCAGGGGTTATGTGAGGCTCTTACAAGACAAGAAAGGTCATTTAG-  849

seq1  AAGCAGACAGCTTATTT-GGAATGAACTAGCTACTGAAGGTCTGTGGGCC  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCAGACAGCTTATTTGGGAATGAACTAGCTACTGAAGGTCTGTGGGCC  899

seq1  CACAGGTGAT-CCCCCACTTTGGAGAGGAATTGCCATACAAGGAAAAGGC  948
      |||||||||| ||||||||||||||||||| |||||||||  | ||| ||
seq2  CACAGGTGATCCCCCCACTTTGGAGAGGAA-TGCCATACA--GGAAATGC  946

seq1  AGGTACTCGCGGCCCCGCCCTCTTTTAGGGTTTTTTTTTTTGTTTTTTGT  998
      | ||||||||||||    |||| ||||||  ||||||||||| |||||||
seq2  A-GTACTCGCGGCC---GCCTC-TTTAGG--TTTTTTTTTTG-TTTTTGT  988

seq1  TTTTTTTT  1006
      ||||||||
seq2  TTTTTTTT  996