BAC Information

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BAC

Clone NameB6Ng01-325M18
Chromosome9 (Build37)
Map Location 33,460,634 - 33,505,044
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325M18.bB6Ng01-325M18.g
ACCGA113762GA113763
length1,004983
definitionB6Ng01-325M18.b B6Ng01-325M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,504,461 - 33,505,044)(33,460,634 - 33,461,496)
sequence
gaattcattcactagcaatttttaatctactgcttgtaaaaacaatgtct
atgtcctaaatttagtatttgtaataaaccaataacttaatatcactatg
ataattttccaaatgaggagacaagaaacaagaaattttgatgtgtttct
atgcagcagggtacaagaaatactgatgttcagtgtgtttcattgctgta
acatttcattggtagaacaatatccaccttatacacaatctttcctttca
gaaactgtacagtctcaaggattattacaaaatgttatactattatataa
catttatagaagaccattgttttggcatagactccaactatcctgtgaag
ctccatctgtttttatcctcaaagtgaaaatgttttttttaagaatgtta
atttttaagaatgggcaataaaggtaagtttttaaaagcagttagatggt
atctctatcaaactaacaagagaaggttctcttgggctaggtgacctcct
ctgccacaggttcttggctagatttacaatatcaggcatgatgagttccc
ttttctggaggagtcttaaatccaatcggaaaactattggtaacacccat
aacattcatattactgttgcacaaatggatacatcctgctgagatgattg
tcatttctgcatcctttcacccacatcagagaggcttcttgttgtagtga
atggccttgactacagtaactcacaactaaccaaaatacagagaatgaat
aactgtagagtgttcagattcagataagatgtttatgttagacccttgca
aaagctcagagaacatagcaaaagaggggtagaaacattgtgggaaatag
tgtcttctgtgcatggcaatgctgtttctgtcatgtagtcatggcatcta
tggttgtctacccaagaactcaccaggtcaagttagccaatattcaaaca
tgggtagggcaggggcttaaaagttatactactcctaaaaggtattggct
cagt

gaattccctgtgcctttccccgtccaaggctgagaagctcagtccaagca
gagagtagatgagtcaagagtgatcacactaaatacatttcatatattca
aatatttcccatataacagatctgcaattggtcatttatcatctaatgag
atgtggtcctgctaaacaaatgaaatagcaacaatctccaggtcttgtaa
caagactcacagtctcttgatacacttttcaatccaacatttattaaaac
atttgacataccaataattggaaatatgataaattctaaagagaaaatat
catcaatagataccaatctaaaatgacccaaatatcagagactacaaatc
atttattatagctatgttctatcaagtaaaggtaaaatactcttcacata
aatgcaaaataatattttaaagcagaaaacaaaagagtgtaaatgagttg
aaataaaatatacaagtgaaaatataatatctgaaaaattaaaaattcat
tgtgagtagccctcatcaaaatgggcatgataggtgtgaacttgaaggtc
cttgaacagaaattgctaattctgttttttcggctatttacatatattgt
tgggtcttttaaaaattttttttaatttggtattttcttcatttacattt
caaatgctagcccaaaagtcccccataccctcccccacccactcccctac
ccacccattgccacttcttggccctggcgttcccctctactgaggcatat
aaagtttgcaagaccaaggggtctctcttcccaatgatggccaactaggc
catcttctgctacatatgcagctagagaaaggagctctgggggtactggt
tagttcatattgttgttccacctatagggttgcagacccctttagctcct
tgggtactttctctagctcctccattgggggccctgtgttccatcccata
gatgactatgagcatccacttctgtgtttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33504461_33505044
seq2: B6Ng01-325M18.b_34_617 (reverse)

seq1  GTTTTCCGATTGGATTTAAGACTCCTCCAGAAAAGGGAACTCATCATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCGATTGGATTTAAGACTCCTCCAGAAAAGGGAACTCATCATGCC  50

seq1  TGATATTGTAAATCTAGCCAAGAACCTGTGGCAGAGGAGGTCACCTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGTAAATCTAGCCAAGAACCTGTGGCAGAGGAGGTCACCTAGCC  100

seq1  CAAGAGAACCTTCTCTTGTTAGTTTGATAGAGATACCATCTAACTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACCTTCTCTTGTTAGTTTGATAGAGATACCATCTAACTGCTTT  150

seq1  TAAAAACTTACCTTTATTGCCCATTCTTAAAAATTAACATTCTTAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTACCTTTATTGCCCATTCTTAAAAATTAACATTCTTAAAAAA  200

seq1  AACATTTTCACTTTGAGGATAAAAACAGATGGAGCTTCACAGGATAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCACTTTGAGGATAAAAACAGATGGAGCTTCACAGGATAGTTG  250

seq1  GAGTCTATGCCAAAACAATGGTCTTCTATAAATGTTATATAATAGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATGCCAAAACAATGGTCTTCTATAAATGTTATATAATAGTATAA  300

seq1  CATTTTGTAATAATCCTTGAGACTGTACAGTTTCTGAAAGGAAAGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTAATAATCCTTGAGACTGTACAGTTTCTGAAAGGAAAGATTGT  350

seq1  GTATAAGGTGGATATTGTTCTACCAATGAAATGTTACAGCAATGAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGTGGATATTGTTCTACCAATGAAATGTTACAGCAATGAAACAC  400

seq1  ACTGAACATCAGTATTTCTTGTACCCTGCTGCATAGAAACACATCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATCAGTATTTCTTGTACCCTGCTGCATAGAAACACATCAAAAT  450

seq1  TTCTTGTTTCTTGTCTCCTCATTTGGAAAATTATCATAGTGATATTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTCTTGTCTCCTCATTTGGAAAATTATCATAGTGATATTAAGT  500

seq1  TATTGGTTTATTACAAATACTAAATTTAGGACATAGACATTGTTTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTATTACAAATACTAAATTTAGGACATAGACATTGTTTTTACA  550

seq1  AGCAGTAGATTAAAAATTGCTAGTGAATGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGATTAAAAATTGCTAGTGAATGAATTC  584


seq1: chr9_33460634_33461496
seq2: B6Ng01-325M18.g_67_929

seq1  GAATTCCCTGTGCCTTTCCCCGTCCAAGGCTGAGAAGCTCAGTCCAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGCCTTTCCCCGTCCAAGGCTGAGAAGCTCAGTCCAAGCA  50

seq1  GAGAGTAGATGAGTCAAGAGTGATCACACTAAATACATTTCATATATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGATGAGTCAAGAGTGATCACACTAAATACATTTCATATATTCA  100

seq1  AATATTTCCCATATAACAGATCTGCAATTGGTCATTTATCATCTAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCCCATATAACAGATCTGCAATTGGTCATTTATCATCTAATGAG  150

seq1  ATGTGGTCCTGCTAAACAAATGAAATAGCAACAATCTCCAGGTCTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCCTGCTAAACAAATGAAATAGCAACAATCTCCAGGTCTTGTAA  200

seq1  CAAGACTCACAGTCTCTTGATACACTTTTCAATCCAACATTTATTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCACAGTCTCTTGATACACTTTTCAATCCAACATTTATTAAAAC  250

seq1  ATTTGACATACCAATAATTGGAAATATGATAAATTCTAAAGAGAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATACCAATAATTGGAAATATGATAAATTCTAAAGAGAAAATAT  300

seq1  CATCAATAGATACCAATCTAAAATGACCCAAATATCAGAGACTACAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAGATACCAATCTAAAATGACCCAAATATCAGAGACTACAAATC  350

seq1  ATTTATTATAGCTATGTTCTATCAAGTAAAGGTAAAATACTCTTCACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATAGCTATGTTCTATCAAGTAAAGGTAAAATACTCTTCACATA  400

seq1  AATGCAAAATAATATTTTAAAGCAGAAAACAAAAGAGTGTAAATGAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAATAATATTTTAAAGCAGAAAACAAAAGAGTGTAAATGAGTTG  450

seq1  AAATAAAATATACAAGTGAAAATATAATATCTGAAAAATTAAAAATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATACAAGTGAAAATATAATATCTGAAAAATTAAAAATTCAT  500

seq1  TGTGAGTAGCCCTCATCAAAATGGGCATGATAGGTGTGAACTTGAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAGCCCTCATCAAAATGGGCATGATAGGTGTGAACTTGAAGGTC  550

seq1  CTTGAACAGAAATTGCTAATTCTGTTTTTTCGGCTATTTACATATATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAGAAATTGCTAATTCTGTTTTTTCGGCTATTTACATATATTGT  600

seq1  TGGGTCTTTTAAAAATTTTTTTTAATTTGGTATTTTCTTCATTTACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTTTAAAAATTTTTTTTAATTTGGTATTTTCTTCATTTACATTT  650

seq1  CAAATGCTAGCCCAAAAGTCCCCCATACCCTCCCCCACCCACTCCCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTAGCCCAAAAGTCCCCCATACCCTCCCCCACCCACTCCCCTAC  700

seq1  CCACCCATTGCCACTTCTTGGCCCTGGCGTTCCCCTCTACTGAGGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATTGCCACTTCTTGGCCCTGGCGTTCCCCTCTACTGAGGCATAT  750

seq1  AAAGTTTGCAAGACCAAGGGGTCTCTCTTCCCAATGATGGCCAACTAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCAAGACCAAGGGGTCTCTCTTCCCAATGATGGCCAACTAGGC  800

seq1  CATCTTCTGCTACATATGCAGCTAGAGAAAGGAGCTCTGGGGGTACTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTGCTACATATGCAGCTAGAGAAAGGAGCTCTGGGGGTACTGGT  850

seq1  TAGTTCATATTGT  863
      |||||||||||||
seq2  TAGTTCATATTGT  863


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