BAC Information

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BAC

Clone NameB6Ng01-326A13
Chromosome9 (Build37)
Map Location 30,127,652 - 30,259,598
singlet/doubletdoublet
Overlap geneSnx19
Upstream geneHnt
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A13.bB6Ng01-326A13.g
ACCGA113943GA113944
length1,259366
definitionB6Ng01-326A13.b B6Ng01-326A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,258,340 - 30,259,598)(30,127,652 - 30,128,023)
sequence
gaattcttttgtaaaggccttagttttacactagaacttatttgtaggtt
ggcacctcccattggatattcaacatcctattgtggggacgtggggctct
tttacttactacacttgaaaaagagtagccgaggagtatcagctctgtgt
tgtaatgtggaaatctctggttttagagtgaccatagttcaaaataacct
ctgaacaaagtatacccgaatatttaaagacgagaacaagttgtaagctt
ttaattattcaccctatggtagaggacagtgacagatttaaaacactgtg
gacaagatagaacaaggcagtgcaaacctgcaatcccagcactttgaggc
tgaggcaagagcatccccagtgaggccaacctaggccacaaagcgagact
gtctcaaaacaagcaaagaagcaagcattgggcatggtggcattcacttg
caatcccagaacttgggaagatgacacagaaggatcaagaggttgaagct
agcctgggctacatggtgaggccttagtatgaaaaacagaataaaaaact
caagcaaacaaaacccccaaaccacaaaccaccaaccaaccaacccaaac
aaaacaaagacatcagtagactgtatacaacataacaatgctttgtattt
ctgtatttgcataaatgcttggccatacatcttagatttactttcctagt
aatggactttttgaaagctaacaatcaaattaaaatgtttgccaaaactc
cagccacagggtgattgttgtcaggaatatgttggtaataagttagctga
tctagaatgaagaatttattatgaaaaatccatgcaatgggcaagttaca
catagttatgcatcctgctggaagggccaaggggtgaaaggcaagggttc
atggcccagccatggcttctttctacacgctataaatcctggggaaggga
gacagctgccagctgcctatgcttcgttctgttggttttcttggcaaata
agccctgaggacagaaaggactgaaagtcaaacatgagagagatgtctag
atgactagtcccccatgtgttttaggagtggtttctgatggattggaaca
acaccaagctgcttccatcccagttttgaattagaaagaagaaagaacgt
agcttgaaggagggtgtggtggggaacccagacaagccagccaaagcctg
atcctttctaagagatatggcacagaaatgagaacacttgtagattcctg
gccaaataa
ttcagtaaagcaatttgagtctagagatttctgttgccaggagtttttac
atcatgaactcaatttctccaacagttccagggttattccctgtaattac
ccatttcatatggagagagctatggtagtttgtggtatgtctgtagctat
agggttgtttttgtatcagtagttacttttctgttgctgtgataagatac
caggaccaaagcagcttaaggaagaaaaggtctactctggcttgtggctc
caaagaaaagagaggacatcatagccagaaggtatggtgtgcctgaagag
cagggagctgacagatcacattttcatccacatacaggaaagggaggggg
aagggggaaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30258340_30259598
seq2: B6Ng01-326A13.b_46_1304 (reverse)

seq1  TTATTTTTGCCA-GAATCTACAAGTG-TCTCCTTTCTGTGCCATACTTCT  48
      ||| ||| |||| ||||||||||||| |||| |||||||||||||  |||
seq2  TTA-TTTGGCCAGGAATCTACAAGTGTTCTCATTTCTGTGCCATATCTCT  49

seq1  TAGAAAGGGAGCCAGCTTCTGCT-GCTTGTCTGTG-TCCCCACCACA-CC  95
      |||||| ||| |  ||||  ||| ||||||||| | ||||||||||| ||
seq2  TAGAAA-GGATCAGGCTTTGGCTGGCTTGTCTGGGTTCCCCACCACACCC  98

seq1  TCCTTCCAGCTACATTCTTTTCTTCTTTCTAATTTCAAAAACTGGGTTGG  145
      |||||| |||||| ||| ||||||||||||||||   ||||||||| |||
seq2  TCCTTCAAGCTACGTTC-TTTCTTCTTTCTAATT--CAAAACTGGGATGG  145

seq1  AAGCAGCTTGGTGTTGTTCC-ATCCATCAGAAACACTTCCTAAAACACAT  194
      |||||||||||||||||||| |||||||||||||   |||||||||||||
seq2  AAGCAGCTTGGTGTTGTTCCAATCCATCAGAAACCACTCCTAAAACACAT  195

seq1  GGGGGACTTAGTCATCTAGACATCTCTCTCATGTTTGACTTTCAGTCCTT  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAC-TAGTCATCTAGACATCTCTCTCATGTTTGACTTTCAGTCCTT  244

seq1  TCTGTCCTCAGGGCTTATTTGCCAAGAAAACCAACAGAACGAAGCATAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCAGGGCTTATTTGCCAAGAAAACCAACAGAACGAAGCATAGG  294

seq1  CAGCTGGCAGCTGTCTCCCTTCCCCAGGATTTATAGCGTGTAGAAAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCAGCTGTCTCCCTTCCCCAGGATTTATAGCGTGTAGAAAGAAG  344

seq1  CCATGGCTGGGCCATGAACCCTTGCCTTTCACCCCTTGGCCCTTCCAGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGGGCCATGAACCCTTGCCTTTCACCCCTTGGCCCTTCCAGCA  394

seq1  GGATGCATAACTATGTGTAACTTGCCCATTGCATGGATTTTTCATAATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATAACTATGTGTAACTTGCCCATTGCATGGATTTTTCATAATAA  444

seq1  ATTCTTCATTCTAGATCAGCTAACTTATTACCAACATATTCCTGACAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATTCTAGATCAGCTAACTTATTACCAACATATTCCTGACAACA  494

seq1  ATCACCCTGTGGCTGGAGTTTTGGCAAACATTTTAATTTGATTGTTAGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTGTGGCTGGAGTTTTGGCAAACATTTTAATTTGATTGTTAGCT  544

seq1  TTCAAAAAGTCCATTACTAGGAAAGTAAATCTAAGATGTATGGCCAAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAGTCCATTACTAGGAAAGTAAATCTAAGATGTATGGCCAAGCA  594

seq1  TTTATGCAAATACAGAAATACAAAGCATTGTTATGTTGTATACAGTCTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAAATACAGAAATACAAAGCATTGTTATGTTGTATACAGTCTAC  644

seq1  TGATGTCTTTGTTTTGTTTGGGTTGGTTGGTTGGTGGTTTGTGGTTTGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTTGTTTTGTTTGGGTTGGTTGGTTGGTGGTTTGTGGTTTGGG  694

seq1  GGTTTTGTTTGCTTGAGTTTTTTATTCTGTTTTTCATACTAAGGCCTCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTGCTTGAGTTTTTTATTCTGTTTTTCATACTAAGGCCTCAC  744

seq1  CATGTAGCCCAGGCTAGCTTCAACCTCTTGATCCTTCTGTGTCATCTTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCCCAGGCTAGCTTCAACCTCTTGATCCTTCTGTGTCATCTTCC  794

seq1  CAAGTTCTGGGATTGCAAGTGAATGCCACCATGCCCAATGCTTGCTTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTGGGATTGCAAGTGAATGCCACCATGCCCAATGCTTGCTTCTT  844

seq1  TGCTTGTTTTGAGACAGTCTCGCTTTGTGGCCTAGGTTGGCCTCACTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTTGAGACAGTCTCGCTTTGTGGCCTAGGTTGGCCTCACTGGG  894

seq1  GATGCTCTTGCCTCAGCCTCAAAGTGCTGGGATTGCAGGTTTGCACTGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTGCCTCAGCCTCAAAGTGCTGGGATTGCAGGTTTGCACTGCC  944

seq1  TTGTTCTATCTTGTCCACAGTGTTTTAAATCTGTCACTGTCCTCTACCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATCTTGTCCACAGTGTTTTAAATCTGTCACTGTCCTCTACCAT  994

seq1  AGGGTGAATAATTAAAAGCTTACAACTTGTTCTCGTCTTTAAATATTCGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAATAATTAAAAGCTTACAACTTGTTCTCGTCTTTAAATATTCGG  1044

seq1  GTATACTTTGTTCAGAGGTTATTTTGAACTATGGTCACTCTAAAACCAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTTGTTCAGAGGTTATTTTGAACTATGGTCACTCTAAAACCAGA  1094

seq1  GATTTCCACATTACAACACAGAGCTGATACTCCTCGGCTACTCTTTTTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCACATTACAACACAGAGCTGATACTCCTCGGCTACTCTTTTTCA  1144

seq1  AGTGTAGTAAGTAAAAGAGCCCCACGTCCCCACAATAGGATGTTGAATAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTAAGTAAAAGAGCCCCACGTCCCCACAATAGGATGTTGAATAT  1194

seq1  CCAATGGGAGGTGCCAACCTACAAATAAGTTCTAGTGTAAAACTAAGGCC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGAGGTGCCAACCTACAAATAAGTTCTAGTGTAAAACTAAGGCC  1244

seq1  TTTACAAAAGAATTC  1259
      |||||||||||||||
seq2  TTTACAAAAGAATTC  1259

seq1: chr9_30127652_30128023
seq2: B6Ng01-326A13.g_68_439

seq1  GAATTCTTCAGTAAAGCAATTTGAGTCTAGAGATTTCTGTTGCCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTAAAGCAATTTGAGTCTAGAGATTTCTGTTGCCAGGAGT  50

seq1  TTTTACATCATGAACTCAATTTCTCCAACAGTTCCAGGGTTATTCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATCATGAACTCAATTTCTCCAACAGTTCCAGGGTTATTCCCTGT  100

seq1  AATTACCCATTTCATATGGAGAGAGCTATGGTAGTTTGTGGTATGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCATTTCATATGGAGAGAGCTATGGTAGTTTGTGGTATGTCTGT  150

seq1  AGCTATAGGGTTGTTTTTGTATCAGTAGTTACTTTTCTGTTGCTGTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGGGTTGTTTTTGTATCAGTAGTTACTTTTCTGTTGCTGTGATA  200

seq1  AGATACCAGGACCAAAGCAGCTTAAGGAAGAAAAGGTCTACTCTGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAGGACCAAAGCAGCTTAAGGAAGAAAAGGTCTACTCTGGCTTG  250

seq1  TGGCTCCAAAGAAAAGAGAGGACATCATAGCCAGAAGGTATGGTGTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAAAGAAAAGAGAGGACATCATAGCCAGAAGGTATGGTGTGCCT  300

seq1  GAAGAGCAGGGAGCTGACAGATCACATTTTCATCCACATACAGGAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGGGAGCTGACAGATCACATTTTCATCCACATACAGGAAAGGG  350

seq1  AGGGGGAAGGGGGAAAGGAGGA  372
      ||||||||||||||||||||||
seq2  AGGGGGAAGGGGGAAAGGAGGA  372