BAC Information

Click to search

BAC

Clone NameB6Ng01-327A24
Chromosome9 (Build37)
Map Location 118,111,152 - 118,112,259
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327A24.b
ACCGA114706
length1,102
definitionB6Ng01-327A24.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtggaagatcctatgcaatctcctgaagtataaaataaattc
attctttcattccctccccactccctccctccccacaccctcccttcccc
tgcctctctacttcttccctcttccttctcttcctctctccgtccctttc
gctttccctcccttcctcctttcctccccactccttccttcccttcttcc
ctctctctccctccgcctcttctcctaggaattgaatcctggcccttttg
caccctgtgcatgttggccaagtggtggctaaccactgagctatactata
agcccttagtttactctctgtaacagtactataacccaaggcattcctaa
tcctctaatggcagaaaggtgggaaacacaagcctttcaaaatttcagcc
ataatacacttagagtcctcctcttataaatctcaatttccagaaaagct
atcttttattttaaaggaagagagtttttagaattttcatataaccattg
acatactaaaatgtcacggtcaagatgctaggcttggctggtattaacat
ctttaacaagttagacgtgaaaaggtatcccttgacagtcaattaggtta
ctttctctgcttgcctaatgactgcaggaccctttgctgtgaattctggg
ggtaagatttgaagtgtgactttagctgctttctaaaaaggcgtgttcat
tatagtataccagtggcagatgcatatattatgtgatctctaaatccatg
gatgaaaaaggcacagataagcatccactgcattctatgttttatatcat
agtaagtatccatatatcttactagttttatgatctataattttagttga
ctcacattgggggtccaaaaaatccctatttatcaatgaatgcatttatt
ctgaaaactagaaatttggatattaaattatgtgtgatgctttcaaggaa
agaggtttcatttttttaaattaagatttattttattcatatgatgtttt
gcccggcatgtatccatatgttaccatgttcatacttggtcccatggagt
cagaagaacgggtcaacacctggaccttgcttgtgaatgttgtgagccac
ct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118111152_118112259
seq2: B6Ng01-327A24.b_48_1149 (reverse)

seq1  AGGTGGCTCACAACCATCCACAACCCCAGGTCCAGGGTGTTTGACCCCTT  50
      ||||||||||||| ||| |||||  | ||||||| |||| ||||||| ||
seq2  AGGTGGCTCACAA-CATTCACAA-GCAAGGTCCA-GGTG-TTGACCCGTT  46

seq1  CTTCTGACCTCCATGGGACCAAGTATGAACATGGT-ACATATGGATACAT  99
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCTGA-CTCCATGGGACCAAGTATGAACATGGTAACATATGGATACAT  95

seq1  GCC-GGCAAAACATTCATATGAATAAAAATAAATCTTAATTTAAAAAAAT  148
      ||| ||||||||| |||||||||| |||||||||||||||||||||||||
seq2  GCCGGGCAAAACA-TCATATGAAT-AAAATAAATCTTAATTTAAAAAAAT  143

seq1  TGAAAACCTCTTTCCTTGAAAGCATCACACATAATTTAATATCCAAATTT  198
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GAAACCTCTTTCCTTGAAAGCATCACACATAATTTAATATCCAAATTT  191

seq1  CTAGTTTTCAGAATAAATGCATTCATTGATAAATAGGGATTTTTTGGA-C  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAGTTTTCAGAATAAATGCATTCATTGATAAATAGGGATTTTTTGGACC  241

seq1  CCCAATGTGAGTCAACTAAAATTATAGATCATAAAACTAGTAAGATATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTGAGTCAACTAAAATTATAGATCATAAAACTAGTAAGATATAT  291

seq1  GGATACTTACTATGATATAAAACATAGAATGCAGTGGATGCTTATCTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTACTATGATATAAAACATAGAATGCAGTGGATGCTTATCTGTG  341

seq1  CCTTTTTCATCCATGGATTTAGAGATCACATAATATATGCATCTGCCACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCATCCATGGATTTAGAGATCACATAATATATGCATCTGCCACT  391

seq1  GGTATACTATAATGAACACGCCTTTTTAGAAAGCAGCTAAAGTCACACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACTATAATGAACACGCCTTTTTAGAAAGCAGCTAAAGTCACACTT  441

seq1  CAAATCTTACCCCCAGAATTCACAGCAAAGGGTCCTGCAGTCATTAGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTACCCCCAGAATTCACAGCAAAGGGTCCTGCAGTCATTAGGCA  491

seq1  AGCAGAGAAAGTAACCTAATTGACTGTCAAGGGATACCTTTTCACGTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAAAGTAACCTAATTGACTGTCAAGGGATACCTTTTCACGTCTA  541

seq1  ACTTGTTAAAGATGTTAATACCAGCCAAGCCTAGCATCTTGACCGTGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAAAGATGTTAATACCAGCCAAGCCTAGCATCTTGACCGTGACA  591

seq1  TTTTAGTATGTCAATGGTTATATGAAAATTCTAAAAACTCTCTTCCTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATGTCAATGGTTATATGAAAATTCTAAAAACTCTCTTCCTTTA  641

seq1  AAATAAAAGATAGCTTTTCTGGAAATTGAGATTTATAAGAGGAGGACTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGATAGCTTTTCTGGAAATTGAGATTTATAAGAGGAGGACTCT  691

seq1  AAGTGTATTATGGCTGAAATTTTGAAAGGCTTGTGTTTCCCACCTTTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATTATGGCTGAAATTTTGAAAGGCTTGTGTTTCCCACCTTTCTG  741

seq1  CCATTAGAGGATTAGGAATGCCTTGGGTTATAGTACTGTTACAGAGAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGAGGATTAGGAATGCCTTGGGTTATAGTACTGTTACAGAGAGTA  791

seq1  AACTAAGGGCTTATAGTATAGCTCAGTGGTTAGCCACCACTTGGCCAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGGCTTATAGTATAGCTCAGTGGTTAGCCACCACTTGGCCAACA  841

seq1  TGCACAGGGTGCAAAAGGGCCAGGATTCAATTCCTAGGAGAAGAGGCGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGGTGCAAAAGGGCCAGGATTCAATTCCTAGGAGAAGAGGCGGA  891

seq1  GGGAGAGAGAGGGAAGAAGGGAAGGAAGGAGTGGGGAGGAAAGGAGGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGGGAAGAAGGGAAGGAAGGAGTGGGGAGGAAAGGAGGAAG  941

seq1  GGAGGGAAAGCGAAAGGGACGGAGAGAGGAAGAGAAGGAAGAGGGAAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAAGCGAAAGGGACGGAGAGAGGAAGAGAAGGAAGAGGGAAGAA  991

seq1  GTAGAGAGGCAGGGGAAGGGAGGGTGTGGGGAGGGAGGGAGTGGGGAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGGCAGGGGAAGGGAGGGTGTGGGGAGGGAGGGAGTGGGGAGGG  1041

seq1  AATGAAAGAATGAATTTATTTTATACTTCAGGAGATTGCATAGGATCTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAATGAATTTATTTTATACTTCAGGAGATTGCATAGGATCTTC  1091

seq1  CACCAGAATTC  1108
      |||||||||||
seq2  CACCAGAATTC  1102