BAC Information

Click to search

BAC

Clone NameB6Ng01-327B11
Chromosome9 (Build37)
Map Location 110,749,785 - 110,891,843
singlet/doubletdoublet
Overlap gene1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3
Upstream geneCamp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230
Downstream geneENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327B11.bB6Ng01-327B11.g
ACCGA114727GA114728
length904686
definitionB6Ng01-327B11.b B6Ng01-327B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,749,785 - 110,750,690)(110,891,162 - 110,891,843)
sequence
gaattcaccatttcagtcatactggctgccaggagagcgcctaggatcta
cttgtgttggcccacaagcactggggttacaggtgtgtccactgccacat
ctgcctgggaatcacgattgcacaagaccttaccatctctccaaccataa
accatacctcttaaaggtctaaaccctctatatcacttcctgaggaccaa
ctctatatatggaccttcaaaggaacacacaaattacatccacgccatag
tggtttcaacaagctaggacctgtctgatgttaactgctaataggtagtt
tatcctgggtattagagttatccatcgtcccttaaccatcccagccccca
cccccaccccagactgtagccgttgagccccaacactgttctacgttgca
tggtgtacagctgagggaagcagactctgtgctctgtgtcatggcagcgt
ctgctagtgtgacatagttcagttccacctgtttgaggagctcagtgact
acatgtgatgaaatgtcccatttaaaacaaacaagacagccgggcagtgg
tggcccacgcctttaatcccaccacttgggagacagaggcaggcggattt
ctgagttcgaggccagcctggtctacagagtgagtttcagtacatccagg
gctacacagagaaaccctgtctaaaaacaaacaaacaaacaaacaaacaa
agacaacaacaaaagctcccctcccccatcaaagatagatcaaacctcac
tcccactgtgtatggcgccacacatctgtaatcctagaacgtgggagata
aaggaaaatcaggattacaccatactttgactggctagcctgagctacat
agaccctgaatttaagaagaaggaggaggaggaggaggagaaaggaggag
gagg
tcattagggactgggatttcccctcccccatgactgtgaccttaaaacgg
tgacagaatccaggctaggatgagacactgtggaaaaaggagggaagaat
gggggcctcatttactcaaggggaggccagccaacgttttacactttctt
ttccaggagagaaagagggtgccccaaggcccagggatagaggtaggaga
acatagaggttagagactcgggatctgtcacacctgctgctgtctgtgag
gggactggaccattctcagccaagagatgtcttgggagactccagaacaa
agcctcagttggcttatttgagaacttgggactcaggactggcacacagc
ggaactggagtgctgagaccaggccccatctgtggttggctgctggggac
agctcaagcctgtatgaaaaactgagtgagggtaactctcaattagtgct
tttcatggggctcagagctagcttgtcagcatctcctctcagtttattgc
cacatttgccctaagatggcagcctaggatcaaaacatagtaaaaaaaaa
aagaggggggaggggggctggagagatggctcagtggttaagggcactga
ctgctcttccaaaggtcctgagtttcaaatcccagcaacctcatgggggg
ctcaattactattctgtaaggagatctgatgctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110749785_110750690
seq2: B6Ng01-327B11.b_47_950

seq1  GAATTCACCATTTCAGTCATACTGGCTGCCAGGAGAGCGCCTAGGATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTCAGTCATACTGGCTGCCAGGAGAGCGCCTAGGATCTA  50

seq1  CTTGTGTTGGCCCACAAGCACTGGGGTTACAGGTGTGTCCACTGCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTGGCCCACAAGCACTGGGGTTACAGGTGTGTCCACTGCCACAT  100

seq1  CTGCCTGGGAATCACGATTGCACAAGACCTTACCATCTCTCCAACCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGAATCACGATTGCACAAGACCTTACCATCTCTCCAACCATAA  150

seq1  ACCATACCTCTTAAAGGTCTAAACCCTCTATATCACTTCCTGAGGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCTCTTAAAGGTCTAAACCCTCTATATCACTTCCTGAGGACCAA  200

seq1  CTCTATATATGGACCTTCAAAGGAACACACAAATTACATCCACGCCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATATGGACCTTCAAAGGAACACACAAATTACATCCACGCCATAG  250

seq1  TGGTTTCAACAAGCTAGGACCTGTCTGATGTTAACTGCTAATAGGTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAACAAGCTAGGACCTGTCTGATGTTAACTGCTAATAGGTAGTT  300

seq1  TATCCTGGGTATTAGAGTTATCCATCGTCCCTTAACCATCCCAGCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGGTATTAGAGTTATCCATCGTCCCTTAACCATCCCAGCCCCCA  350

seq1  CCCCCACCCCAGACTGTAGCCGTTGAGCCCCAACACTGTTCTACGTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCAGACTGTAGCCGTTGAGCCCCAACACTGTTCTACGTTGCA  400

seq1  TGGTGTACAGCTGAGGGAAGCAGACTCTGTGCTCTGTGTCATGGCAGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACAGCTGAGGGAAGCAGACTCTGTGCTCTGTGTCATGGCAGCGT  450

seq1  CTGCTAGTGTGACATAGTTCAGTTCCACCTGTTTGAGGAGCTCAGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTGTGACATAGTTCAGTTCCACCTGTTTGAGGAGCTCAGTGACT  500

seq1  ACATGTGATGAAATGTCCCATTTAAAACAAACAAGACAGCCGGGCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATGAAATGTCCCATTTAAAACAAACAAGACAGCCGGGCAGTGG  550

seq1  TGGCCCACGCCTTTAATCCCACCACTTGGGAGACAGAGGCAGGCGGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACGCCTTTAATCCCACCACTTGGGAGACAGAGGCAGGCGGATTT  600

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGTACATCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGTACATCCAGG  650

seq1  GCTACACAGAGAAACCCTGTCTAAAAACAAACAAACAAACAAACAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTAAAAACAAACAAACAAACAAACAAACAA  700

seq1  AGACAACAACAAAAGCTCCCCTCCCCCATCAAAGATAGATCAAACCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAACAAAAGCTCCCCTCCCCCATCAAAGATAGATCAAACCTCAC  750

seq1  TCCCACTGTGTATGGCGCCACACATCTGTAATCCTAGAACGTGGGAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGTGTATGGCGCCACACATCTGTAATCCTAGAACGTGGGAGATA  800

seq1  AAGGAAAATCAGGATTACACCATACTTTGACTGGCTAGCCTGAGCTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAATCAGGATTACACCATACTTTGACTGGCTAGCCTGAGCTACAT  850

seq1  AGACCCTGAATTTAAGAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  AGACCCTGAATTTAAGAAGAAGGAGGAGGAGGAGGAGGAGAA--AGGAGG  898

seq1  AGGAGG  906
      ||||||
seq2  AGGAGG  904

seq1: chr9_110891162_110891843
seq2: B6Ng01-327B11.g_78_763 (reverse)

seq1  GAGGGCATCAGATCTCATTACAG-ATGGT-TTTGAG-CCACCATGAGGTT  47
      ||| |||||||||||| |||||| || ||  ||||| || ||||||||||
seq2  GAGAGCATCAGATCTCCTTACAGAATAGTAATTGAGCCCCCCATGAGGTT  50

seq1  GCTGGGATTTG-AACTCAGGACCTTTGGAAGAGCAGTCAGTGCCCTTAAC  96
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTGAAACTCAGGACCTTTGGAAGAGCAGTCAGTGCCCTTAAC  100

seq1  CACTGAGCCATCTCTCCAGCCCCCCTCCCCCCTCTTTTTTTTTTTACTAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCCAGCCCCCCTCCCCCCTCTTTTTTTTTTTACTAT  150

seq1  GTTTTGATCCTAGGCTGCCATCTTAGGGCAAATGTGGCAATAAACTGAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATCCTAGGCTGCCATCTTAGGGCAAATGTGGCAATAAACTGAGA  200

seq1  GGAGATGCTGACAAGCTAGCTCTGAGCCCCATGAAAAGCACTAATTGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCTGACAAGCTAGCTCTGAGCCCCATGAAAAGCACTAATTGAGA  250

seq1  GTTACCCTCACTCAGTTTTTCATACAGGCTTGAGCTGTCCCCAGCAGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCTCACTCAGTTTTTCATACAGGCTTGAGCTGTCCCCAGCAGCCA  300

seq1  ACCACAGATGGGGCCTGGTCTCAGCACTCCAGTTCCGCTGTGTGCCAGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGATGGGGCCTGGTCTCAGCACTCCAGTTCCGCTGTGTGCCAGTC  350

seq1  CTGAGTCCCAAGTTCTCAAATAAGCCAACTGAGGCTTTGTTCTGGAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCAAGTTCTCAAATAAGCCAACTGAGGCTTTGTTCTGGAGTCT  400

seq1  CCCAAGACATCTCTTGGCTGAGAATGGTCCAGTCCCCTCACAGACAGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACATCTCTTGGCTGAGAATGGTCCAGTCCCCTCACAGACAGCAG  450

seq1  CAGGTGTGACAGATCCCGAGTCTCTAACCTCTATGTTCTCCTACCTCTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGACAGATCCCGAGTCTCTAACCTCTATGTTCTCCTACCTCTAT  500

seq1  CCCTGGGCCTTGGGGCACCCTCTTTCTCTCCTGGAAAAGAAAGTGTAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCCTTGGGGCACCCTCTTTCTCTCCTGGAAAAGAAAGTGTAAAA  550

seq1  CGTTGGCTGGCCTCCCCTTGAGTAAATGAGGCCCCCATTCTTCCCTCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGCTGGCCTCCCCTTGAGTAAATGAGGCCCCCATTCTTCCCTCCTT  600

seq1  TTTCCACAGTGTCTCATCCTAGCCTGGATTCTGTCACCGTTTTAAGGTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGTGTCTCATCCTAGCCTGGATTCTGTCACCGTTTTAAGGTCA  650

seq1  CAGTCATGGGGGAGGGGAAATCCCAGTCCCTAATGA  682
      ||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGGGGGAGGGGAAATCCCAGTCCCTAATGA  686