BAC Information

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BAC

Clone NameB6Ng01-327F01
Chromosome9 (Build37)
Map Location 5,597,226 - 5,727,181
singlet/doubletdoublet
Overlap genenone
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327F01.bB6Ng01-327F01.g
ACCGA114894GA114895
length1,0701,048
definitionB6Ng01-327F01.b B6Ng01-327F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,597,226 - 5,598,302)(5,726,136 - 5,727,181)
sequence
gaattctacttggacattgtggtgacaattgaggaaattctcactggatt
tctgacaaatctcccagattcttcataccttttttttcctatttgctaaa
ggaaaatgtgtactacacttttaaggagtgggaaagtattagtgtacaag
tcttgcctccagcttctatcttgtcttacctataacaagaataaaatgag
tggatatctatgtaggtaaaatagggttctctagggacataaaaaagacc
taaactttcatcaaaaataaaatactactttctgccttactcttaccctt
gagttattggacagtttttcccaccaaatctaaagaccctctcatgaact
agggagatgattcataacaaccaggatgcaaagcaactatcatgacaccc
aaaacttaaaaacaattcaaaagacccctacattcttaatcaagtaccaa
ctggtaggcagaagaactcaaaaccagccaaggcacctgaagcttatata
ggtaattccaaggatagagatttcccaggcatcagcatccatgatgcaga
cacctttgagtcacctgtgtgacagtttttcatattcccatcaggaaact
aagaaaaaaattaaagagctgacagaatttatcatcagattcctccacat
gtgtaagtaatgataataatgttcaattttcaatagtaacactacattct
tgcatcttaatagataaaaaatgagcagacacaacataatccatgaaatg
gaagaataatcaaaactgtgttttctgatttgttccaaccacagttacct
gttctaggtctttaccactcagaaacacaaagggcttcatattttggaat
aatcataacatcttgtgagcagaatccttctattcataatgaaataaaag
ttctgccaattttcttcaatttacttaatatcttgtcctcattgcagatg
aatgttattggaaaagattatatgttgttttgtttttgattttgttactt
gttttgaaatagggtttctctggatagtcttggccatttctggaactcac
tctgtagacagctgcctcaa

gaattcattctgtagacaaatctgatcttgatctcagagatcaccctgtc
tctgccttcccactataaaagatgagagccaccaatggcaggcattgttt
taattttgatggatgaggaatattccactctgtaaatgcacctaacacat
tttctttgtccattcatctgctgaggtaaatctgggtcagttccaatttc
tgcctattatgaatagaacagcaatgaacaaagttgagcaaaggtctttg
tgatagaatggagattcctttgtgtatattcacaaaatacagcattcatt
ctgaatggggaaggagacagtaacctcatatgtaggaaaataaacctatc
acaaagatatcaaatgtgagcaatgtgtatatttcataaattcaatatct
gaatgtgttacatatatatcggacatatgtaataaaagaaaaataaaagg
aaaaaattcagtaaacatgaagatagaataagaaaaataatttaacctca
agtatgcagggaggaaattaatacaacaccgctttctatgcaatatcatc
tgtaataaagttaaagcccaaaatccaatattattaaggcttggatcagg
ttcagttaagaaagctcttgtttatcacatatgaagaccttggttcaatg
catagagctctactaaactgaatgtgaaggggcatgcctgtaatgccagg
gttatagatgttgagtcagacaaggcaattgttggcactataattaattt
gggacaatctacactacataaagcccatctcaagggggaaaatagataca
ttttccaaaacctgtgccctacaagaaacccacaaaaatgccttacatgc
tgaagaaagtaaaatgcaaagtggatattcagtaatgaatggagacatat
gcaacagtaactgcctacttaaagaaatacaggagaacactgctaaatgg
gtagaagaccttaagaggagcacaaaatcccttaaagaatttcagaaaca
cgacaaacaggtgatggatgataaacatcagacctaaaaaggagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5597226_5598302
seq2: B6Ng01-327F01.b_47_1116

seq1  GAATTCTACTTGGACATTGTGGTGACAATTGAGGAAATTCTCACTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTGGACATTGTGGTGACAATTGAGGAAATTCTCACTGGATT  50

seq1  TCTGACAAATCTCCCAGATTCTTCATACCTTTTTTTTCCTATTTGCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAATCTCCCAGATTCTTCATACCTTTTTTTTCCTATTTGCTAAA  100

seq1  GGAAAATGTGTACTACACTTTTAAGGAGTGGGAAAGTATTAGTGTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTGTACTACACTTTTAAGGAGTGGGAAAGTATTAGTGTACAAG  150

seq1  TCTTGCCTCCAGCTTCTATCTTGTCTTACCTATAACAAGAATAAAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCCAGCTTCTATCTTGTCTTACCTATAACAAGAATAAAATGAG  200

seq1  TGGATATCTATGTAGGTAAAATAGGGTTCTCTAGGGACATAAAAAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCTATGTAGGTAAAATAGGGTTCTCTAGGGACATAAAAAAGACC  250

seq1  TAAACTTTCATCAAAAATAAAATACTACTTTCTGCCTTACTCTTACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCATCAAAAATAAAATACTACTTTCTGCCTTACTCTTACCCTT  300

seq1  GAGTTATTGGACAGTTTTTCCCACCAAATCTAAAGACCCTCTCATGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTGGACAGTTTTTCCCACCAAATCTAAAGACCCTCTCATGAACT  350

seq1  AGGGAGATGATTCATAACAACCAGGATGCAAAGCAACTATCATGACACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGATTCATAACAACCAGGATGCAAAGCAACTATCATGACACCC  400

seq1  AAAACTTAAAAACAATTCAAAAGACCCCTACATTCTTAATCAAGTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAAACAATTCAAAAGACCCCTACATTCTTAATCAAGTACCAA  450

seq1  CTGGTAGGCAGAAGAACTCAAAACCAGCCAAGGCACCTGAAGCTTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGCAGAAGAACTCAAAACCAGCCAAGGCACCTGAAGCTTATATA  500

seq1  GGTAATTCCAAGGATAGAGATTTCCCAGGCATCAGCATCCATGATGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTCCAAGGATAGAGATTTCCCAGGCATCAGCATCCATGATGCAGA  550

seq1  CACCTTTGAGTCACCTGTGTGACAGTTTTTCATATTCCCATCAGGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGAGTCACCTGTGTGACAGTTTTTCATATTCCCATCAGGAAACT  600

seq1  AAGAAAAAAATTAAAGAGCTGACAGAATTTATCATCAGATTCCTCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAATTAAAGAGCTGACAGAATTTATCATCAGATTCCTCCACAT  650

seq1  GTGTAAGTAATGATAATAATGTTCAATTTTCAATAGTAACACTACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTAATGATAATAATGTTCAATTTTCAATAGTAACACTACATTCT  700

seq1  TGCATCTTAATAGATAAAAAATGAGCAGACACAACATAATCCATGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTAATAGATAAAAAATGAGCAGACACAACATAATCCATGAAATG  750

seq1  GAAGAATAATCAAAACTGTGTTTTCTGATTTGTTCCAACCACAGTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAATCAAAACTGTGTTTTCTGATTTGTTCCAACCACAGTTACCT  800

seq1  GTTCTAGGTCTTTACCACTCAGAAACACAAAGGGCTTCATATTTTGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGTCTTTACCACTCAGAAACACAAAGGGCTTCATATTTTGGAAT  850

seq1  AATCATAACATCTTGTGAGCAGAATCCTTCTATTCATAATGAAATAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAACATCTTGTGAGCAGAATCCTTCTATTCATAATGAAATAAAAG  900

seq1  TTCTGCCAATTTTCTTCAATTTACTTAATATCTTGTCCTCATTGCAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAATTTTCTTCAATTTACTTAATATCTTGTCCTCATTGCAGATG  950

seq1  AATGTTATTGGAAAAGATTATATGTTGTTTTTGTTTTTGATTTTTGTTTA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||   |||
seq2  AATGTTATTGGAAAAGATTATATGTTG-TTTTGTTTTTGATTTT--GTTA  997

seq1  CTTTGTTTTTGAAATAGGGTTTCTCTGGATAGTCTTGGCCA-TTCTGGAA  1049
      |||   ||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTT--GTTTTGAAATAGGGTTTCTCTGGATAGTCTTGGCCATTTCTGGAA  1045

seq1  CTCACTCTGTAGACCAGGCTGGCCTCAA  1077
      ||||||||||||||   ||| |||||||
seq2  CTCACTCTGTAGAC--AGCT-GCCTCAA  1070


seq1: chr9_5726136_5727181
seq2: B6Ng01-327F01.g_80_1110 (reverse)

seq1  TCTACTTCCCTTTTTAGGTCTTGGATGGTTTTATTCAATTCCATCACCTG  50
      ||||||  |||||||||||||  ||||  |||| |||  |||||||||||
seq2  TCTACT--CCTTTTTAGGTCT--GATG--TTTA-TCA--TCCATCACCTG  41

seq1  TTTGGTCGTGTTTTCCTGAAATTCTTTAAGGGATTTTTGTGCTTCCTCTT  100
      ||| |||||||||  |||||||||||||||||| |||||||| ||||| |
seq2  TTT-GTCGTGTTT--CTGAAATTCTTTAAGGGA-TTTTGTGC-TCCTC-T  85

seq1  TAAGGTCTTCTACCCATTTAGCAGTGTTCTCCTGTATTTCTTTAAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTTCTACCCATTTAGCAGTGTTCTCCTGTATTTCTTTAAGTAGG  135

seq1  CAGTTACTGTTGCATATGTCTCCATTCATTACTGAATATCCACTTTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTGTTGCATATGTCTCCATTCATTACTGAATATCCACTTTGCAT  185

seq1  TTTACTTTCTTCAGCATGTAAGGCATTTTTGTGGGTTTCTTGTAGGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCTTCAGCATGTAAGGCATTTTTGTGGGTTTCTTGTAGGGCAC  235

seq1  AGGTTTTGGAAAATGTATCTATTTTCCCCCTTGAGATGGGCTTTATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGGAAAATGTATCTATTTTCCCCCTTGAGATGGGCTTTATGTAG  285

seq1  TGTAGATTGTCCCAAATTAATTATAGTGCCAACAATTGCCTTGTCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGTCCCAAATTAATTATAGTGCCAACAATTGCCTTGTCTGACT  335

seq1  CAACATCTATAACCCTGGCATTACAGGCATGCCCCTTCACATTCAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTATAACCCTGGCATTACAGGCATGCCCCTTCACATTCAGTTTA  385

seq1  GTAGAGCTCTATGCATTGAACCAAGGTCTTCATATGTGATAAACAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTCTATGCATTGAACCAAGGTCTTCATATGTGATAAACAAGAGC  435

seq1  TTTCTTAACTGAACCTGATCCAAGCCTTAATAATATTGGATTTTGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAACTGAACCTGATCCAAGCCTTAATAATATTGGATTTTGGGCTT  485

seq1  TAACTTTATTACAGATGATATTGCATAGAAAGCGGTGTTGTATTAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTATTACAGATGATATTGCATAGAAAGCGGTGTTGTATTAATTTC  535

seq1  CTCCCTGCATACTTGAGGTTAAATTATTTTTCTTATTCTATCTTCATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCATACTTGAGGTTAAATTATTTTTCTTATTCTATCTTCATGTT  585

seq1  TACTGAATTTTTTCCTTTTATTTTTCTTTTATTACATATGTCCGATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTTTTTCCTTTTATTTTTCTTTTATTACATATGTCCGATATAT  635

seq1  ATGTAACACATTCAGATATTGAATTTATGAAATATACACATTGCTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACACATTCAGATATTGAATTTATGAAATATACACATTGCTCACAT  685

seq1  TTGATATCTTTGTGATAGGTTTATTTTCCTACATATGAGGTTACTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCTTTGTGATAGGTTTATTTTCCTACATATGAGGTTACTGTCTC  735

seq1  CTTCCCCATTCAGAATGAATGCTGTATTTTGTGAATATACACAAAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATTCAGAATGAATGCTGTATTTTGTGAATATACACAAAGGAAT  785

seq1  CTCCATTCTATCACAAAGACCTTTGCTCAACTTTGTTCATTGCTGTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTATCACAAAGACCTTTGCTCAACTTTGTTCATTGCTGTTCTA  835

seq1  TTCATAATAGGCAGAAATTGGAACTGACCCAGATTTACCTCAGCAGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATAGGCAGAAATTGGAACTGACCCAGATTTACCTCAGCAGATGA  885

seq1  ATGGACAAAGAAAATGTGTTAGGTGCATTTACAGAGTGGAATATTCCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAAGAAAATGTGTTAGGTGCATTTACAGAGTGGAATATTCCTCA  935

seq1  TCCATCAAAATTAAAACAATGCCTGCCATTGGTGGCTCTCATCTTTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAAATTAAAACAATGCCTGCCATTGGTGGCTCTCATCTTTTATA  985

seq1  GTGGGAAGGCAGAGACAGGGTGATCTCTGAGATCAAGATCAGATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGCAGAGACAGGGTGATCTCTGAGATCAAGATCAGATTT  1031


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