BAC Information

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BAC

Clone NameB6Ng01-327M01
Chromosome9 (Build37)
Map Location 116,590,626 - 116,727,595
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M01.bB6Ng01-327M01.g
ACCGA115209GA115210
length1,0891,057
definitionB6Ng01-327M01.b B6Ng01-327M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,590,626 - 116,591,713)(116,726,545 - 116,727,595)
sequence
gaattctccaaaagaaaaaggcaccaggctttgtaaaggaaggtggtaag
agctcacattgagcgcatctgtttcaggaaataagaattcattcctagaa
gggtctacacatcagtggttctctacttgctggttcgtgatccctctcag
gattgaacaactctttcacaggggttgcatatcacatagcctacatatca
gatatttgtattacaactcgcaacactcgcaagtgtacagttatgaagta
gcatgagtaactgcattaaagggccacacacagatttagggaggtcggaa
atcactcttctaatattttgtggtagtatccttcagaggatagtattttc
tccaaagaaagaggatgacttgagtctggattggagaaaagaactttctg
gattcgatcaaggaagtggtgtaggtaacaggattatgggacaagctcca
agagactgtgggtagcacttaatttccttgaccttttagaacacccactg
aacaattataaaataatactgggtgaaatcaggagctcacaaatacgagg
gaagaaccttttcttctacaaaactgaaatacctagacgttaaagccaac
ggcatatcatcaacatgtgggagaggccttagtgtctaccaggtgtctac
tgacctaactcttcagtggggttttaaacagtttactccacatagctcca
ttgacatgaaagaccaaagtagccatggaacagataagacgaggtcacca
tagaaagtctgtgcactcatgctcctacctgctgggaaatcagggagaaa
gcaacaagtgttttgctttgctaactgcatagcaagagtcagccatgata
ctccctttataagtaacaacacaacgtattcattaactcccagaattcac
tgtcactttgaaaacataagggcttatctaaaaggaagcattttatggtc
ttctgctggatagagcatatataagatttgaggttgccaagactcaagtt
gtaatggttcaaagcaaggattagtgacatgcatgttttttgttaaaaca
ttctatttaagttaacctttttttatttaggttttatca

gaattcttgtgctgacatccaggtggtttctttgtttggttttgtgtccc
agatggtaacaccctctgcatcccagggtagcctcagccttccgagtgcc
tggattataagtgcatgttcagcaggcctttcttctagcagtattggatt
tactggtttgtggaaggcgagtagaattaaaagaacaaacaccaagaaag
cagagagcagaaactgtgagcctgtcttgcttgtcagcttctgggaaatg
gacgtagaatgagtcctcctttctctgagaattttagattttaaatcttg
gggagcagaacctccctcagctgacctgatggcacagactaggacagagc
ttttagttctaccgtgtgctaataaagcaaatcgttctaccatgtgctaa
tagagccgacaatattcctacctatgcggtagcacttggtctgtgttctg
gaacaatggtggctcttgcttctgctattaggattagaaataaaattttg
cagagtccctcctttttctaaaagaaaaaatattactaaatttattgtat
tgtgtgtggagaagaagggacatgtgttatagcccatgttatgcaaaggt
cagaggacaacttgtaagggttggtttcctccttccacgtgggtgttcta
agccttgaactcgcatggtgaggctctaaggcaggtgcctttaggtgctg
cggcattcaggcattcaatgtcgctacttttaaaagtccacccccttttt
ctcactcacctttttccttgagaattccctttctgaagcacaaagcagag
atgattggacagtgttcttgattctcctggggctaatgcataatgtatta
gtcaaaggtttttcctgctgtgaacagacaccatgggccaaagtaactct
ttataaaaggacattttatttcgggctggtttacaggttaggaggttcag
tccattatcatcaaggcaggagcaaggcagcatccaggcagcttggaagc
taggagagctaagagttacacttcaaaggaaaccagagcagacttacctc
cacatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116590626_116591713
seq2: B6Ng01-327M01.b_42_1130

seq1  GAATTCTCCAAAAGAAAAAGGCACCAGGCTTTGTAAAGGAAGGTGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAAGAAAAAGGCACCAGGCTTTGTAAAGGAAGGTGGTAAG  50

seq1  AGCTCACATTGAGCGCATCTGTTTCAGGAAATAAGAATTCATTCCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACATTGAGCGCATCTGTTTCAGGAAATAAGAATTCATTCCTAGAA  100

seq1  GGGTCTACACATCAGTGGTTCTCTACTTGCTGGTTCGTGATCCCTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTACACATCAGTGGTTCTCTACTTGCTGGTTCGTGATCCCTCTCAG  150

seq1  GATTGAACAACTCTTTCACAGGGGTTGCATATCACATAGCCTACATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAACAACTCTTTCACAGGGGTTGCATATCACATAGCCTACATATCA  200

seq1  GATATTTGTATTACAACTCGCAACACTCGCAAGTGTACAGTTATGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGTATTACAACTCGCAACACTCGCAAGTGTACAGTTATGAAGTA  250

seq1  GCATGAGTAACTGCATTAAAGGGCCACACACAGATTTAGGGAGGTCGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTAACTGCATTAAAGGGCCACACACAGATTTAGGGAGGTCGGAA  300

seq1  ATCACTCTTCTAATATTTTGTGGTAGTATCCTTCAGAGGATAGTATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTTCTAATATTTTGTGGTAGTATCCTTCAGAGGATAGTATTTTC  350

seq1  TCCAAAGAAAGAGGATGACTTGAGTCTGGATTGGAGAAAAGAACTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAAGAGGATGACTTGAGTCTGGATTGGAGAAAAGAACTTTCTG  400

seq1  GATTCGATCAAGGAAGTGGTGTAGGTAACAGGATTATGGGACAAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGATCAAGGAAGTGGTGTAGGTAACAGGATTATGGGACAAGCTCCA  450

seq1  AGAGACTGTGGGTAGCACTTAATTTCCTTGACCTTTTAGAACACCCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTGGGTAGCACTTAATTTCCTTGACCTTTTAGAACACCCACTG  500

seq1  AACAATTATAAAATAATACTGGGTGAAATCAGGAGCTCACAAATACGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATAAAATAATACTGGGTGAAATCAGGAGCTCACAAATACGAGG  550

seq1  GAAGAACCTTTTCTTCTACAAAACTGAAATACCTAGACGTTAAAGCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCTTTTCTTCTACAAAACTGAAATACCTAGACGTTAAAGCCAAC  600

seq1  GGCATATCATCAACATGTGGGAGAGGCCTTAGTGTCTACCAGGTGTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATCATCAACATGTGGGAGAGGCCTTAGTGTCTACCAGGTGTCTAC  650

seq1  TGACCTAACTCTTCAGTGGGGTTTTAAACAGTTTACTCCACATAGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAACTCTTCAGTGGGGTTTTAAACAGTTTACTCCACATAGCTCCA  700

seq1  TTGACATGAAAGACCAAAGTAGCCATGGAACAGATAAGACGAGGTCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGAAAGACCAAAGTAGCCATGGAACAGATAAGACGAGGTCACCA  750

seq1  TAGAAAGTCTGTGCACTCATGCTCCTACCTGCTGGGAAATCAGGGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTCTGTGCACTCATGCTCCTACCTGCTGGGAAATCAGGGAGAAA  800

seq1  GCAACAAGTGTTTTGCTTTGCTAACTGCATAGCAAGAGTCAGCCATGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGTGTTTTGCTTTGCTAACTGCATAGCAAGAGTCAGCCATGATA  850

seq1  CTCCCTTTATAAGTAACAACACAACGTATTCATTAACTCCCAGAATTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTATAAGTAACAACACAACGTATTCATTAACTCCCAGAATTCAC  900

seq1  TGTCACTTTGAAAACATAAGGGCTTATCTAAAAGGAAGCATTTTATGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTGAAAACATAAGGGCTTATCTAAAAGGAAGCATTTTATGGTC  950

seq1  TTCTGCTGGATAGAGCATATATAAGATTTGAGGTTGCCAAGACTCAAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGATAGAGCATATATAAGATTTGAGGTTGCCAAGACTCAAGTT  1000

seq1  GTTAATGGTTCAAAGCAAGGATTAGTGACATGCATG-TTTTTGTT-ATAC  1048
      | |||||||||||||||||||||||||||||||||| |||||||| | ||
seq2  G-TAATGGTTCAAAGCAAGGATTAGTGACATGCATGTTTTTTGTTAAAAC  1049

seq1  A-TCTATTTAAGTTAAACCTTTTTTTATTTAGGTTTTATCA  1088
      | |||||||||||| ||||||||||||||||||||||||||
seq2  ATTCTATTTAAGTT-AACCTTTTTTTATTTAGGTTTTATCA  1089


seq1: chr9_116726545_116727595
seq2: B6Ng01-327M01.g_65_1121 (reverse)

seq1  CCATGTGGAGGTTAGTCTGCTCCTGGTTTCCTTTG-AGTGTAACTCTTAG  49
      |||||||||||| |||||||| ||||||||||||| ||||||||||||||
seq2  CCATGTGGAGGTAAGTCTGCT-CTGGTTTCCTTTGAAGTGTAACTCTTAG  49

seq1  CTCCTCTAGC-TCCAAGCCTGCCTGGATGCTGCCTTGCTCCTGCCTTGAT  98
      |||  ||||| |||||| ||||||||||||||||||||||||||||||||
seq2  CTCTCCTAGCTTCCAAG-CTGCCTGGATGCTGCCTTGCTCCTGCCTTGAT  98

seq1  GATAATGGACTGAACCTCCTAACCTGTAAACCAGCCCG-AATTAAATGTC  147
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GATAATGGACTGAACCTCCTAACCTGTAAACCAGCCCGAAATAAAATGTC  148

seq1  C-TTTAT-AAGAGTTACCTTGG-CCATGGTGTCTGTTCACAGCAGGAAAA  194
      | ||||| ||||||||| |||| |||||||||||||||||||||||||||
seq2  CTTTTATAAAGAGTTACTTTGGCCCATGGTGTCTGTTCACAGCAGGAAAA  198

seq1  --CCTTGACTAATACATTATGCATTAGCCCCAGGAGAATCAAGAACACTG  242
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACTAATACATTATGCATTAGCCCCAGGAGAATCAAGAACACTG  248

seq1  TCCAATCATCTCTGCTTTGTGCTTCAGAAAGGGAATTCTCAAGGAAAAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCATCTCTGCTTTGTGCTTCAGAAAGGGAATTCTCAAGGAAAAAG  298

seq1  GTGAGTGAGAAAAAGGGGGTGGACTTTTAAAAGTAGCGACATTGAATGCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGAAAAAGGGGGTGGACTTTTAAAAGTAGCGACATTGAATGCC  348

seq1  TGAATGCCGCAGCACCTAAAGGCACCTGCCTTAGAGCCTCACCATGCGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCGCAGCACCTAAAGGCACCTGCCTTAGAGCCTCACCATGCGAG  398

seq1  TTCAAGGCTTAGAACACCCACGTGGAAGGAGGAAACCAACCCTTACAAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTTAGAACACCCACGTGGAAGGAGGAAACCAACCCTTACAAGT  448

seq1  TGTCCTCTGACCTTTGCATAACATGGGCTATAACACATGTCCCTTCTTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGACCTTTGCATAACATGGGCTATAACACATGTCCCTTCTTCT  498

seq1  CCACACACAATACAATAAATTTAGTAATATTTTTTCTTTTAGAAAAAGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACAATACAATAAATTTAGTAATATTTTTTCTTTTAGAAAAAGGA  548

seq1  GGGACTCTGCAAAATTTTATTTCTAATCCTAATAGCAGAAGCAAGAGCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTGCAAAATTTTATTTCTAATCCTAATAGCAGAAGCAAGAGCCA  598

seq1  CCATTGTTCCAGAACACAGACCAAGTGCTACCGCATAGGTAGGAATATTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCCAGAACACAGACCAAGTGCTACCGCATAGGTAGGAATATTG  648

seq1  TCGGCTCTATTAGCACATGGTAGAACGATTTGCTTTATTAGCACACGGTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCTATTAGCACATGGTAGAACGATTTGCTTTATTAGCACACGGTA  698

seq1  GAACTAAAAGCTCTGTCCTAGTCTGTGCCATCAGGTCAGCTGAGGGAGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAGCTCTGTCCTAGTCTGTGCCATCAGGTCAGCTGAGGGAGGT  748

seq1  TCTGCTCCCCAAGATTTAAAATCTAAAATTCTCAGAGAAAGGAGGACTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCCAAGATTTAAAATCTAAAATTCTCAGAGAAAGGAGGACTCA  798

seq1  TTCTACGTCCATTTCCCAGAAGCTGACAAGCAAGACAGGCTCACAGTTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGTCCATTTCCCAGAAGCTGACAAGCAAGACAGGCTCACAGTTTC  848

seq1  TGCTCTCTGCTTTCTTGGTGTTTGTTCTTTTAATTCTACTCGCCTTCCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGCTTTCTTGGTGTTTGTTCTTTTAATTCTACTCGCCTTCCAC  898

seq1  AAACCAGTAAATCCAATACTGCTAGAAGAAAGGCCTGCTGAACATGCACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTAAATCCAATACTGCTAGAAGAAAGGCCTGCTGAACATGCACT  948

seq1  TATAATCCAGGCACTCGGAAGGCTGAGGCTACCCTGGGATGCAGAGGGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCAGGCACTCGGAAGGCTGAGGCTACCCTGGGATGCAGAGGGTG  998

seq1  TTACCATCTGGGACACAAAACCAAACAAAGAAACCACCTGGATGTCAGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCTGGGACACAAAACCAAACAAAGAAACCACCTGGATGTCAGCA  1048

seq1  CAAGAATTC  1051
      |||||||||
seq2  CAAGAATTC  1057


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