BAC Information

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BAC

Clone NameB6Ng01-328A22
Chromosome9 (Build37)
Map Location 63,028,677 - 63,142,973
singlet/doubletdoublet
Overlap geneMap2k5
Upstream geneSpesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1
Downstream gene2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328A22.bB6Ng01-328A22.g
ACCGA115421GA115422
length1,1221,193
definitionB6Ng01-328A22.b B6Ng01-328A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,028,677 - 63,029,818)(63,141,769 - 63,142,973)
sequence
gaattcttctgaatgcatcagtcacaagttctgtgcaagcatttctttta
tgtctgtcaggttggttctgaggaaacaaactaaggtaacaagtttgccc
agtgtgggtatcagagtatggtactctcccttatgatccaagctgagttt
cacatttgtgcataaatagtgataaatgcacacacagaacccccccaccc
ccatcctgtgaggcctggcccattggctactccatttacaaagtctcccc
agatgcccagagccaaaggaaaccctttcttctctcagaactcattttac
ccatcaaataaattcctattatttcaggtcggtagacatttgctgactgt
tggtctcaggtgaggctggatgctaaagatacaaagagggtgataaatag
gacttgatctgtcctctaggaaccatgatctggtctgtgaccaggtacag
tggtgtgaagggtaacatgctagagaaagctcccttcttaactgcagcag
gcctggaagacagcaggagcagaatcctggtggctcagtaagaaagagtt
gcccatgtggctggggagtgggctgtggcatagcacaggacagtgctcca
ggcacgcagagactgccagtggctgaggcaagggaaggggagacaggagg
gctgggtacaccatcagctccttcaagagtggctgattaatcctcactct
cctgctgggccgcaagctgacctgagtcaggacccaggggccacatgatg
cccctcacccccaaggctgggtggggcactgtgtgctgagttggggctca
ggacgaaagcctggcgagtgctcactgaaattctcactctgcctctccac
agctgagaaagctcagaaacagcccgcacctgggcacacgcaggagccta
taatcttgctggccctgacagcccgccatgcctgcctcaagtgctttacc
cacttttcagagcccagcccaggctctggagaaagacctttccagcatct
gccagcttctggggttgcctgtctgtctctgaagctggaggagatcatcc
agagcagctgtgctaaaaaaaatcatgtttatttaaaatagaactgagcc
agcctgtgagccggttgattga
gaattctgaggtaggtgtctggaggtggtgaagcattcaagctgggtcta
aaaggtcaaaccagctttcataatcagtgactgtggagtggaaggaggaa
acatgtgcacggccgctagggtgggccggaaggcagctgtgtaggaagga
tgagaggagggttagcaggaactccagagttgcagcttactccacatcat
gggaactcaagcaaggttcttgttcaagggacagataaggtctcggaaat
tgccatcaactccaaagcgttggctagccatgtgcagccttagccttact
tcttacttacgtgactgctaccattagaaagagggatattagaatagtca
ttttctttccttgtggtttacataactcccgttttttgctttattcagta
taatgatacatggtccccgtctgagatcggaactgtaactcagcactgta
aggtgtggattgactgctgtagcagtcctgacggttaggctttactcaga
agtgtttacaatcaaactctgctacagttcttaaggattcttctccacct
attttatgttcttactgccttttacaaatatattttttaaaggtttttta
aaacgtggtttcactgaagtacttagtcgttgagccgggtggggttctga
ctctttggtagggtactcttggtacctgcactcgtgagaaggttccagat
cagtccccagtgcacacagctgcctaagggaagaggaaagtctttgaatt
aaactcgagcctgccctgggcaagagcgttaagttcatatacttggacat
ttctgtgttataaaatccaccttggtggcagatacttaaggaaaaccaca
acccgtcaggaggtcctggctaagcgtgggagtcaggtgacgtgaggacc
tctccagctctcaagtctgtcagcatttataaagaaacattacccacatg
ggaggaagtaaggtgacaggtttttaaactcccattctttattctgaaaa
tccattttaaaatgttcttttatttacatccctctgctatctcgatgctg
ctcacaggctctgctctttatgatcttcttctgaaaaaaagccggtgtgg
ctcaaataggcaaataaatgagtttaaccttaactggaccttaggcataa
tggcctgaacctctgagaaacttgctccttccacaggggttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_63028677_63029818
seq2: B6Ng01-328A22.b_48_1169

seq1  GAATTCTTCTGAATGCATCAGTCACAAGTTCTGTGCAAGCATTTCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGAATGCATCAGTCACAAGTTCTGTGCAAGCATTTCTTTTA  50

seq1  TGTCTGTCAGGTTGGTTCTGAGGAAACAAACTAAGGTAACAAGTTTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCAGGTTGGTTCTGAGGAAACAAACTAAGGTAACAAGTTTGCCC  100

seq1  AGTGTGGGTATCAGAGTATGGTACTCTCCCTTATGATCCAAGCTGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGTATCAGAGTATGGTACTCTCCCTTATGATCCAAGCTGAGTTT  150

seq1  CACATTTGTGCATAAATAGTGATAAATGCACACACAGAACCCCCCCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGTGCATAAATAGTGATAAATGCACACACAGAACCCCCCCACCC  200

seq1  CCATCCTGTGAGGCCTGGCCCATTGGCTACTCCATTTACAAAGTCTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGTGAGGCCTGGCCCATTGGCTACTCCATTTACAAAGTCTCCCC  250

seq1  AGATGCCCAGAGCCAAAGGAAACCCTTTCTTCTCTCAGAACTCATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCAGAGCCAAAGGAAACCCTTTCTTCTCTCAGAACTCATTTTAC  300

seq1  CCATCAAATAAATTCCTATTATTTCAGGTCGGTAGACATTTGCTGACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATAAATTCCTATTATTTCAGGTCGGTAGACATTTGCTGACTGT  350

seq1  TGGTCTCAGGTGAGGCTGGATGCTAAAGATACAAAGAGGGTGATAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGGTGAGGCTGGATGCTAAAGATACAAAGAGGGTGATAAATAG  400

seq1  GACTTGATCTGTCCTCTAGGAACCATGATCTGGTCTGTGACCAGGTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATCTGTCCTCTAGGAACCATGATCTGGTCTGTGACCAGGTACAG  450

seq1  TGGTGTGAAGGGTAACATGCTAGAGAAAGCTCCCTTCTTAACTGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAAGGGTAACATGCTAGAGAAAGCTCCCTTCTTAACTGCAGCAG  500

seq1  GCCTGGAAGACAGCAGGAGCAGAATCCTGGTGGCTCAGTAAGAAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAGACAGCAGGAGCAGAATCCTGGTGGCTCAGTAAGAAAGAGTT  550

seq1  GCCCATGTGGCTGGGGAGTGGGCTGTGGCATAGCACAGGACAGTGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGGCTGGGGAGTGGGCTGTGGCATAGCACAGGACAGTGCTCCA  600

seq1  GGCACGCAGAGACTGCCAGTGGCTGAGGCAAGGGAAGGGGAGACAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCAGAGACTGCCAGTGGCTGAGGCAAGGGAAGGGGAGACAGGAGG  650

seq1  GCTGGGTACACCATCAGCTCCTTCAAGAGTGGCTGATTAATCCTCACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTACACCATCAGCTCCTTCAAGAGTGGCTGATTAATCCTCACTCT  700

seq1  CCTGCTGGGCCGCAAGCTGACCTGAGTCAGGACCCAGGGGCCACATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGCCGCAAGCTGACCTGAGTCAGGACCCAGGGGCCACATGATG  750

seq1  CCCCTCACCCCCAAGGCTGGGTGGGGCACTGTGTGCTGAGTTGGGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACCCCCAAGGCTGGGTGGGGCACTGTGTGCTGAGTTGGGGCTCA  800

seq1  GGACGAAAGCCTGGCGAGTGCTCACTGAAATTCTCACTCTGCCTCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAAAGCCTGGCGAGTGCTCACTGAAATTCTCACTCTGCCTCTCCAC  850

seq1  AGCTGAGAAAGCTCAGGAAACAGCCCGCACCTGGGCACACGCAGGAGCCT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAAGCTCA-GAAACAGCCCGCACCTGGGCACACGCAGGAGCCT  899

seq1  ATAATCTTGCTGGCCCTGACAGCCCGCCATGCCTGCCTCAAGTGCTTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAATCTTGCTGGCCCTGACAGCCCGCCATGCCTGCCTCAAGTGCTTTAC  949

seq1  CCACTTTTCAGGAGCCCAGCCCAGGCTCTGGAGAAAGACCTTTCCAGCAT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCA-GAGCCCAGCCCAGGCTCTGGAGAAAGACCTTTCCAGCAT  998

seq1  CTGCCAGCTTCTGGGGTTGCCTGTCTGTCTTCTGAAAGCTGGAGGGAGAT  1050
      ||||||||||||||||||||||||||||| |||| |||||||| ||||||
seq2  CTGCCAGCTTCTGGGGTTGCCTGTCTGTC-TCTG-AAGCTGGA-GGAGAT  1045

seq1  CATTCCAGAGGCAAGGCTGTGGCTTAAAAAAAAATCATGTTTAATTTAAA  1100
      || |||||| |||  ||||| |||  |||||||||||||||| |||||||
seq2  CA-TCCAGA-GCA--GCTGT-GCT--AAAAAAAATCATGTTT-ATTTAAA  1087

seq1  AATTAGAAACTGGAGCAGGCTGTGAGCACAGGGGTTGATTGA  1142
      |  ||| |||||   ||| ||||||||     ||||||||||
seq2  A--TAG-AACTGAGCCAGCCTGTGAGC----CGGTTGATTGA  1122

seq1: chr9_63141769_63142973
seq2: B6Ng01-328A22.g_66_1257 (reverse)

seq1  GAACCC---TGGAAGGAGCCAG-GTCTCAGAGG-TCAG--CATTAATGGC  43
      ||||||   |||||||||| ||  ||||||||| ||||  |||| ||| |
seq2  GAACCCCTGTGGAAGGAGCAAGTTTCTCAGAGGTTCAGGCCATT-ATGCC  49

seq1  TTTAAAAGT-CAGTTAAGTTATAACACTCAATTTATGTGCCCTATTTGAG  92
      |   || || |||||||| | ||| |||| |||||| || ||||||||||
seq2  T---AAGGTCCAGTTAAGGT-TAA-ACTC-ATTTATTTG-CCTATTTGAG  92

seq1  CCACACCGGC-TATTTTCAGAAGAAGATCATTAAAAGAGCAGAGCCCTGT  141
      |||||||||| | ||||||||||||||||||  ||||||||||| |||||
seq2  CCACACCGGCTTTTTTTCAGAAGAAGATCAT--AAAGAGCAGAG-CCTGT  139

seq1  GAGCAGGCACTCGGAGATAAGCAGAGGGGATGGTAAATAAAAGAACATTT  191
      ||||| ||| || ||||| |||||| ||||| ||||||||||||||||||
seq2  GAGCA-GCA-TC-GAGAT-AGCAGA-GGGAT-GTAAATAAAAGAACATTT  183

seq1  TAAAATGGGATTTTCAGAAATAAAAGAAATGGGAGTTTAAAAACCCTGTC  241
      |||||| |||||||||| ||||||   |||||||||||||||| ||||||
seq2  TAAAAT-GGATTTTCAG-AATAAA--GAATGGGAGTTTAAAAA-CCTGTC  228

seq1  ACCTTACTTCCTCCCATGTGGGTAATGTTTCTTTATAAATGCTGACAGAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTTCCTCCCATGTGGGTAATGTTTCTTTATAAATGCTGACAGAC  278

seq1  TTGAGAGCTGGAGAGGTCCTCACGTCACCTGACTCCCACGCTTAGCCAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCTGGAGAGGTCCTCACGTCACCTGACTCCCACGCTTAGCCAGG  328

seq1  ACCTCCTGACGGGTTGTGGTTTTCCTTAAGTATCTGCCACCAAGGTGGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGACGGGTTGTGGTTTTCCTTAAGTATCTGCCACCAAGGTGGAT  378

seq1  TTTATAACACAGAAATGTCCAAGTATATGAACTTAACGCTCTTGCCCAGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACACAGAAATGTCCAAGTATATGAACTTAACGCTCTTGCCCAGG  428

seq1  GCAGGCTCGAGTTTAATTCAAAGACTTTCCTCTTCCCTTAGGCAGCTGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCGAGTTTAATTCAAAGACTTTCCTCTTCCCTTAGGCAGCTGTG  478

seq1  TGCACTGGGGACTGATCTGGAACCTTCTCACGAGTGCAGGTACCAAGAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGGGACTGATCTGGAACCTTCTCACGAGTGCAGGTACCAAGAGT  528

seq1  ACCCTACCAAAGAGTCAGAACCCCACCCGGCTCAACGACTAAGTACTTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACCAAAGAGTCAGAACCCCACCCGGCTCAACGACTAAGTACTTCA  578

seq1  GTGAAACCACGTTTTAAAAAACCTTTAAAAAATATATTTGTAAAAGGCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCACGTTTTAAAAAACCTTTAAAAAATATATTTGTAAAAGGCAG  628

seq1  TAAGAACATAAAATAGGTGGAGAAGAATCCTTAAGAACTGTAGCAGAGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATAAAATAGGTGGAGAAGAATCCTTAAGAACTGTAGCAGAGTT  678

seq1  TGATTGTAAACACTTCTGAGTAAAGCCTAACCGTCAGGACTGCTACAGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTAAACACTTCTGAGTAAAGCCTAACCGTCAGGACTGCTACAGCA  728

seq1  GTCAATCCACACCTTACAGTGCTGAGTTACAGTTCCGATCTCAGACGGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCCACACCTTACAGTGCTGAGTTACAGTTCCGATCTCAGACGGGG  778

seq1  ACCATGTATCATTATACTGAATAAAGCAAAAAACGGGAGTTATGTAAACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTATCATTATACTGAATAAAGCAAAAAACGGGAGTTATGTAAACC  828

seq1  ACAAGGAAAGAAAATGACTATTCTAATATCCCTCTTTCTAATGGTAGCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAGAAAATGACTATTCTAATATCCCTCTTTCTAATGGTAGCAG  878

seq1  TCACGTAAGTAAGAAGTAAGGCTAAGGCTGCACATGGCTAGCCAACGCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTAAGTAAGAAGTAAGGCTAAGGCTGCACATGGCTAGCCAACGCTT  928

seq1  TGGAGTTGATGGCAATTTCCGAGACCTTATCTGTCCCTTGAACAAGAACC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGATGGCAATTTCCGAGACCTTATCTGTCCCTTGAACAAGAACC  978

seq1  TTGCTTGAGTTCCCATGATGTGGAGTAAGCTGCAACTCTGGAGTTCCTGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAGTTCCCATGATGTGGAGTAAGCTGCAACTCTGGAGTTCCTGC  1028

seq1  TAACCCTCCTCTCATCCTTCCTACACAGCTGCCTTCCGGCCCACCCTAGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCCTCTCATCCTTCCTACACAGCTGCCTTCCGGCCCACCCTAGC  1078

seq1  GGCCGTGCACATGTTTCCTCCTTCCACTCCACAGTCACTGATTATGAAAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGCACATGTTTCCTCCTTCCACTCCACAGTCACTGATTATGAAAG  1128

seq1  CTGGTTTGACCTTTTAGACCCAGCTTGAATGCTTCACCACCTCCAGACAC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGACCTTTTAGACCCAGCTTGAATGCTTCACCACCTCCAGACAC  1178

seq1  CTACCTCAGAATTC  1205
      ||||||||||||||
seq2  CTACCTCAGAATTC  1192