BAC Information

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BAC

Clone NameB6Ng01-328C05
Chromosome9 (Build37)
Map Location 116,109,014 - 116,254,733
singlet/doubletdoublet
Overlap geneLOC100043819, D730003K21Rik
Upstream geneOsbpl10, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328C05.bB6Ng01-328C05.g
ACCGA115481GA115482
length8101,142
definitionB6Ng01-328C05.b B6Ng01-328C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,109,014 - 116,109,675)(116,253,886 - 116,254,733)
sequence
gaattctcctgtatttccggccttctgccttttagatgcaaggcaagggg
aaactagaactagtttactagaaataatgtaaaacgtaaagggtgtgcta
tatgcatgcgtgtgtgtggtgtgtggtgtgtggtgtgtgtatggggttcc
aggacagccaaggctatacagagaaaccctgtctcgaaaaaccaaagggg
gaaaaatatcacctaccctggtgcatgtgtgtggaggtaagaggacaact
tgacagccattttctaccacatggagaccaacactcagactctagccatc
aggtatgagataatgttcctgtaaccactgaacagctcctggctcctggt
ccttctatcctgaactttgctcttatccctagctattgaccctgatatac
ttttagggcagaacgggttgtgttggcctagccatagagcacagcactca
ggggtctgctctgcaggaagccctcggagtctgtgtgggaaggagttttc
ctctgtgacagaagtgagcttttgtcctgtgagctgcttgcccctccttt
ctgcagctgacagcggctcataagggactgacagttcatcttagtgtcca
tccaggcaacgaacaagagtgtgacgagcacggtggagctgagggaggat
cggcggttccgataggatctgtgttctgcttgctcaccatcgagtcctct
ctcgaccagcaagaacgacacgaccaccagtcctttctaacatcagttta
tttattaatactttcttcttcatctctctcgcttcaacttttttctctct
ctaacacggg
gaattctcttccatttcttttttatgcatttttgtgaataatttttttct
ttttaaattttatggattttaactaaaatataattcattacttatctttt
acttttccctctccagcgcctcccaggtaccttcctttgaatcctaccca
tgacccccacgctgaaacagatcgtcttttttttcctataattattgttc
cgtatatgtatgcatataaatatgcaaaagtatacaaatacaactggatg
ggtccattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacagg
gcctgaggaggctctcagagggcattagatcccccggagctggaactaaa
gatggtgtgaatgccatgtcagtgctgtgaactgaacctgggtcttctgc
aagggcagccagcatcctcaagtgctgagccatgtctccagctccctgtg
cacttcgttttatttctctgggttacacgtaagaaatacacacccaagaa
tcaccagttgatcttatcccatagtaaacaccaacacacaatctttccta
tagacagttctctgctctttgtacgtttatttgcaatgtcccatatatga
agggtttctttatttccagttttgattttaatagtgcaacagttgcaatc
catttatttttgagcagtttataaaagtatagataagagcctctacattt
cacagagcctgcctctagcctaagaaaaatgaagatggcagccactcttc
ctgtccatggcaatcaaatctggtgcagtccacatagctacaaatgtttt
ccagtcacacagcagagagggtgagaatgccgtgacgcctggttgttcag
agattccgtgtgtgtctggtcaatgatacaggccggatactgctccggct
ttatgtctgtagctggggacctgcagttctgcttttgactcattctcatg
agatgggaataattcctcaataaggcattttctcacagagagtcacagtc
agaccttaattaaacagacagcattagatgcagggactagcaggtgacca
agcgaggaaaggcacccactctgctgcctaggcctgaccaacttgagttt
cagtttccaaaaaccgaatgtatggaggaaagaaccagactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116109014_116109675
seq2: B6Ng01-328C05.b_189_853

seq1  GTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAA  50

seq1  AGGGGGAAAAATATCACCTACCCTGGTGCATGTGTGTGGAGGTAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAAAATATCACCTACCCTGGTGCATGTGTGTGGAGGTAAGAGGA  100

seq1  CAACTTGACAGCCATTTTCTACCACATGGAGACCAACACTCAGACTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACAGCCATTTTCTACCACATGGAGACCAACACTCAGACTCTAG  150

seq1  CCATCAGGTATGAGATAATGTTCCTGTAACCACTGAACAGCTCCTGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGTATGAGATAATGTTCCTGTAACCACTGAACAGCTCCTGGCTC  200

seq1  CTGGTCCTTCTATCCTGAACTTTGCTCTTATCCCTAGCTATTGACCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTCTATCCTGAACTTTGCTCTTATCCCTAGCTATTGACCCTGA  250

seq1  TATACTTTTAGGGCAGAACGGGTTGTGTTGGCCTAGCCATAGAGCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTAGGGCAGAACGGGTTGTGTTGGCCTAGCCATAGAGCACAGC  300

seq1  ACTCAGGGGTCTGCTCTGCAGGAAGCCCTCGGAGTCTGTGTGGGAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGGTCTGCTCTGCAGGAAGCCCTCGGAGTCTGTGTGGGAAGGAG  350

seq1  TTTTCCTCTGTGACAGAAGTGAGCTTTTGTCCTGTGAGCTGCTTGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTGTGACAGAAGTGAGCTTTTGTCCTGTGAGCTGCTTGCCCCT  400

seq1  CCTTTCTGCAGCTGACAGCGGCTCATAAGGGACTGACAGTTCATCTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGCAGCTGACAGCGGCTCATAAGGGACTGACAGTTCATCTTAGT  450

seq1  GTCCATCCAGGCAACGAACAAGAGTGTGACGAGCACGGTGGAGCTGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCAGGCAACGAACAAGAGTGTGACGAGCACGGTGGAGCTGAGGG  500

seq1  AGGATCGGCGGTTCCGATAGGATCTGTGTTCTGCTTGCTCACCATCGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCGGCGGTTCCGATAGGATCTGTGTTCTGCTTGCTCACCATCGAGT  550

seq1  CCTCTCTCGACCAGCAAGAACGACACGACCACCAGTCC-TTCTAACAGCA  599
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  CCTCTCTCGACCAGCAAGAACGACACGACCACCAGTCCTTTCTAACATCA  600

seq1  GTTTATTCAGCAA-ACTTCCATCTTCATCTCTCTCGCTTCAAC-TTTTTC  647
      ||||||| |  || |||| | |||||||||||||||||||||| ||||||
seq2  GTTTATTTATTAATACTTTCTTCTTCATCTCTCTCGCTTCAACTTTTTTC  650

seq1  TCTCTCTAACACGGG  662
      |||||||||||||||
seq2  TCTCTCTAACACGGG  665

seq1: chr9_116253886_116254733
seq2: B6Ng01-328C05.g_358_1206 (reverse)

seq1  GAGTCT-GTTCTTTCCTTCCAT-CATTCGGGTTTTGGGAACTG-AACTCA  47
      |||||| ||||||||| ||||| ||||||| |||||| ||||| ||||||
seq2  GAGTCTGGTTCTTTCC-TCCATACATTCGGTTTTTGGAAACTGAAACTCA  49

seq1  GGTT-GTCAGGCTTA-GCAGCAG-GTGGGTGCCTTTCCTCGCTTGGTCAC  94
       ||| ||||||| || ||||||| ||||||||||||||||||||||||||
seq2  AGTTGGTCAGGCCTAGGCAGCAGAGTGGGTGCCTTTCCTCGCTTGGTCAC  99

seq1  CTTGCTAGTCCCTGCATCTAATGCTTGTCTGTTTAATTATGTCTTGACTG  144
      | |||||||||||||||||||||| |||||||||||||| |   ||||||
seq2  C-TGCTAGTCCCTGCATCTAATGC-TGTCTGTTTAATTAAGGTCTGACTG  147

seq1  TGACTCTCTGTGGAGAAAATGCCTTATTGAGGAATTATTCCCATCTCATG  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCTGT-GAGAAAATGCCTTATTGAGGAATTATTCCCATCTCATG  196

seq1  AGAATGAGTCAAAAGCAGAACTGCAGGTCCCCAGCTTACAGACATAAAGC  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAATGAGTCAAAAGCAGAACTGCAGGTCCCCAGC-TACAGACATAAAGC  245

seq1  CGGAGCAGTATCCGGCCTGTATCATTGACCAGACACACACGGAATCTCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCAGTATCCGGCCTGTATCATTGACCAGACACACACGGAATCTCTG  295

seq1  AACAACCAGGCGTCACGGCATTCTCACCCTCTCTGCTGTGTGACTGGAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGGCGTCACGGCATTCTCACCCTCTCTGCTGTGTGACTGGAAA  345

seq1  ACATTTGTAGCTATGTGGACTGCACCAGATTTGATTGCCATGGACAGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTAGCTATGTGGACTGCACCAGATTTGATTGCCATGGACAGGAA  395

seq1  GAGTGGCTGCCATCTTCATTTTTCTTAGGCTAGAGGCAGGCTCTGTGAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTGCCATCTTCATTTTTCTTAGGCTAGAGGCAGGCTCTGTGAAA  445

seq1  TGTAGAGGCTCTTATCTATACTTTTATAAACTGCTCAAAAATAAATGGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGCTCTTATCTATACTTTTATAAACTGCTCAAAAATAAATGGAT  495

seq1  TGCAACTGTTGCACTATTAAAATCAAAACTGGAAATAAAGAAACCCTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGTTGCACTATTAAAATCAAAACTGGAAATAAAGAAACCCTTCA  545

seq1  TATATGGGACATTGCAAATAAACGTACAAAGAGCAGAGAACTGTCTATAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGGACATTGCAAATAAACGTACAAAGAGCAGAGAACTGTCTATAG  595

seq1  GAAAGATTGTGTGTTGGTGTTTACTATGGGATAAGATCAACTGGTGATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTGTGTGTTGGTGTTTACTATGGGATAAGATCAACTGGTGATTC  645

seq1  TTGGGTGTGTATTTCTTACGTGTAACCCAGAGAAATAAAACGAAGTGCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTGTATTTCTTACGTGTAACCCAGAGAAATAAAACGAAGTGCAC  695

seq1  AGGGAGCTGGAGACATGGCTCAGCACTTGAGGATGCTGGCTGCCCTTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTGGAGACATGGCTCAGCACTTGAGGATGCTGGCTGCCCTTGCA  745

seq1  GAAGACCCAGGTTCAGTTCACAGCACTGACATGGCATTCACACCATCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGGTTCAGTTCACAGCACTGACATGGCATTCACACCATCTTT  795

seq1  AGTTCCAGCTCCGGGGGATCTAATGCCCTCTGAGAGCCTCCTCAGGCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCTCCGGGGGATCTAATGCCCTCTGAGAGCCTCCTCAGGCCCT  845

seq1  GTAA  848
      ||||
seq2  GTAA  849