BAC Information

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BAC

Clone NameB6Ng01-328C22
Chromosome9 (Build37)
Map Location 43,458,491 - 43,591,655
singlet/doubletdoublet
Overlap geneLOC384931, Pvrl1
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328C22.bB6Ng01-328C22.g
ACCGA115515GA115516
length1,173487
definitionB6Ng01-328C22.b B6Ng01-328C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,458,491 - 43,459,616)(43,591,163 - 43,591,655)
sequence
gaattcctataaacaaacaaggaaaagataaattatatgttagaatggat
gggcaaaggacatgaagggataaatacttcaccaacagtgatgtgtgaat
gactgattaacacatggtgcccaactaatccgtcatcagagaaatgcaaa
ttaaatccataatataatgttgccacacacccatcgccacagccaaaatt
acaaagatgggcaataccatgtgttggcaggtacacagaacaactgggac
ttctgacgtatctggcagaaatataaatgaatacaatcctcccagacaag
cgcctggcagtgtattcgctatctattaccatgtaacagattaccacaaa
cacagtgacttcaaacagcacatgcttattaccaaacagtctccacagac
caggaatccaaccaagctaagcctggggcctggggctcaaagctatctac
tccatgctgtcaaggatatgaggtgggggctggggggctgtgatcttacc
tgaatttgcacattcactcccctggttgttgaaaggattgcattcctcct
gacatatttactatggggagtcttctactggactgtcctcagtatcttag
agggctttctgaggcagaggcagtgtacaggcagaaattgtcatcttccc
atagctatcccagaggtgatgctcttaacatcttttctcggtttttaaag
gtgaggaggtgagcctagcaaatgctcgtgggaaaggtgaacgagaggct
ggtcactagaagccaccatagaagcctctcctcagcagtatctctcgagc
tgatgtgggcagacctgtgaccccataggatagcatcctataacacacac
gtccatgcaccacattatacaggaagcttcacaggccccattcctaatgg
ctcaactggaagcgatccaaatagccatcaacagaagaatggagaaagaa
gttgtgtgtaatcatacaaagagatattacctatccgcaagagaaggagc
tacaagcatgcatacacacgagctcagagagagcatggagggagatctgt
caaacacagaacaagtgcatgctgtacgtcttcatatacaaaggttcaac
aaaatggagaagtatttaacagagttcgggagttcatgaaagtggctacc
ccttcgtggggagaaggagcgag
tcttggggacagagtttctgggatggctccaggggctctgtatccttcca
ctcactatcagccactcacagtagtgatcatgtcctgtgatcccacagtc
aggggctaattgctactgtctgagcccaggcgcctccacccccagctctg
gggtcacagaaactgcccatgttttcctcttggctgaatgctccccccga
ctccccacatggagttggttaatgatggggctgtggggctggcgcccagt
tgccttgggtgggggaacccagtgcgtgggagaagagggggagcggcagc
ctgggaaaggacctagaaggagccagggtgcaggatcttccagacagact
gggccagccccactgccctggcaatacagaagccccgagggtgacattat
ccatggggcggggggtgccctgacaagctctatctctccctgaaacttgg
cagggcgggttgggggaccgagatgagtctgggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43458491_43459616
seq2: B6Ng01-328C22.b_99_1223

seq1  ATGGGCAAAGGACATGAAGGGATAAATACTTCACCAACAGTGATGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAAGGACATGAAGGGATAAATACTTCACCAACAGTGATGTGTGA  50

seq1  ATGACTGATTAACACATGGTGCCCAACTAATCCGTCATCAGAGAAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATTAACACATGGTGCCCAACTAATCCGTCATCAGAGAAATGCA  100

seq1  AATTAAATCCATAATATAATGTTGCCACACACCCATCGCCACAGCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCCATAATATAATGTTGCCACACACCCATCGCCACAGCCAAAA  150

seq1  TTACAAAGATGGGCAATACCATGTGTTGGCAGGTACACAGAACAACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGATGGGCAATACCATGTGTTGGCAGGTACACAGAACAACTGGG  200

seq1  ACTTCTGACGTATCTGGCAGAAATATAAATGAATACAATCCTCCCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACGTATCTGGCAGAAATATAAATGAATACAATCCTCCCAGACA  250

seq1  AGCGCCTGGCAGTGTATTCGCTATCTATTACCATGTAACAGATTACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTGGCAGTGTATTCGCTATCTATTACCATGTAACAGATTACCACA  300

seq1  AACACAGTGACTTCAAACAGCACATGCTTATTACCAAACAGTCTCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGACTTCAAACAGCACATGCTTATTACCAAACAGTCTCCACAG  350

seq1  ACCAGGAATCCAACCAAGCTAAGCCTGGGGCCTGGGGCTCAAAGCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAATCCAACCAAGCTAAGCCTGGGGCCTGGGGCTCAAAGCTATCT  400

seq1  ACTCCATGCTGTCAAGGATATGAGGTGGGGGCTGGGGGGCTGTGATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGCTGTCAAGGATATGAGGTGGGGGCTGGGGGGCTGTGATCTTA  450

seq1  CCTGAATTTGCACATTCACTCCCCTGGTTGTTGAAAGGATTGCATTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTTGCACATTCACTCCCCTGGTTGTTGAAAGGATTGCATTCCTC  500

seq1  CTGACATATTTACTATGGGGAGTCTTCTACTGGACTGTCCTCAGTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATTTACTATGGGGAGTCTTCTACTGGACTGTCCTCAGTATCTT  550

seq1  AGAGGGCTTTCTGAGGCAGAGGCAGTGTACAGGCAGAAATTGTCATCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTTCTGAGGCAGAGGCAGTGTACAGGCAGAAATTGTCATCTTC  600

seq1  CCATAGCTATCCCAGAGGTGATGCTCTTAACATCTTTTCTCGGTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTATCCCAGAGGTGATGCTCTTAACATCTTTTCTCGGTTTTTAA  650

seq1  AGGTGAGGAGGTGAGCCTAGCAAATGCTCGTGGGAAAGGTGAACGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGAGGTGAGCCTAGCAAATGCTCGTGGGAAAGGTGAACGAGAGG  700

seq1  CTGGTCACTAGAAGCCACCATAGAAGCCTCTCCTCAGCAGTATCTCTCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACTAGAAGCCACCATAGAAGCCTCTCCTCAGCAGTATCTCTCGA  750

seq1  GCTGATGTGGGCAGACCTGTGACCCCATAGGATAGCATCCTATAACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTGGGCAGACCTGTGACCCCATAGGATAGCATCCTATAACACAC  800

seq1  ACGTCCATGCACCACATTATACAGGAAGCTTCACAGGCCCCATTCCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCATGCACCACATTATACAGGAAGCTTCACAGGCCCCATTCCTAAT  850

seq1  GGCTCAACTGGAAGCGATCCAAATAGCCATCAACAGAAGAATGGAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACTGGAAGCGATCCAAATAGCCATCAACAGAAGAATGGAGAAAG  900

seq1  AAGTTGTGTGTAATCATACAAAGAGATATTACCTATCCGCAAGAAGAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTTGTGTGTAATCATACAAAGAGATATTACCTATCCGCAAG-AGAAGG  949

seq1  AGCTACAAGCATGCAATACACACGAAGCTCAGAGAGAGCATGGAGGGAGA  1000
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AGCTACAAGCATGC-ATACACACG-AGCTCAGAGAGAGCATGGAGGGAGA  997

seq1  TCTTGTCAAACACAG-ACAAGTGCATGCTGTACGTCTTCATTATACAAA-  1048
      || |||||||||||| |||||||||||||||||||||||| |||||||| 
seq2  TC-TGTCAAACACAGAACAAGTGCATGCTGTACGTCTTCA-TATACAAAG  1045

seq1  GTTCAACAAAAGGGAGAAGGTAATTTACAGAGTTC-GGAG-TCATGAAGG  1096
      ||||||||||| |||||| ||| || ||||||||| |||| ||||||| |
seq2  GTTCAACAAAATGGAGAA-GTATTTAACAGAGTTCGGGAGTTCATGAAAG  1094

seq1  TGGTTACCCCTCCGTGGGGAG-AGGAGCGAG  1126
      ||| ||||||| ||||||||| |||||||||
seq2  TGGCTACCCCTTCGTGGGGAGAAGGAGCGAG  1125

seq1: chr9_43591163_43591655
seq2: B6Ng01-328C22.g_68_560 (reverse)

seq1  ACCTCCCTGACTCATCTCGGTCCCCCAACCCGCCCTGCCAAGTTTCAGGG  50
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGACTCATCTCGGTCCCCCAACCCGCCCTGCCAAGTTTCAGGG  50

seq1  AGAGATAGAGCTTGTCAGGGCACCCCCCGCCCCATGGCTACTGTCACCCT  100
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  AGAGATAGAGCTTGTCAGGGCACCCCCCGCCCCATGGATAATGTCACCCT  100

seq1  CGGGGCTTCTGTATTGCCAGGGCAGTGGGGCTGGCCCAGTCTGTCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTTCTGTATTGCCAGGGCAGTGGGGCTGGCCCAGTCTGTCTGGAA  150

seq1  GATCCTGCACCCTGGCTCCTTCTAGGTCCTTTCCCAGGCTGCCGCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCACCCTGGCTCCTTCTAGGTCCTTTCCCAGGCTGCCGCTCCCC  200

seq1  CTCTTCTCCCACGCACTGGGTTCCCCCACCCAAGGCAACTGGGCGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCCACGCACTGGGTTCCCCCACCCAAGGCAACTGGGCGCCAGC  250

seq1  CCCACAGCCCCATCATTAACCAACTCCATGTGGGGAGTCGGGGGGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCCCATCATTAACCAACTCCATGTGGGGAGTCGGGGGGAGCAT  300

seq1  TCAGCCAAGAGGAAAACATGGGCAGTTTCTGTGACCCCAGAGCTGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAAGAGGAAAACATGGGCAGTTTCTGTGACCCCAGAGCTGGGGGT  350

seq1  GGAGGCGCCTGGGCTCAGACAGTAGCAATTAGCCCCTGACTGTGGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGCCTGGGCTCAGACAGTAGCAATTAGCCCCTGACTGTGGGATCA  400

seq1  CAGGACATGATCACTACTGTGAGTGGCTGATAGTGAGTGGAAGGATACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGATCACTACTGTGAGTGGCTGATAGTGAGTGGAAGGATACAG  450

seq1  AGCCCCTGGAGCCATCCCAGAAACTCTGTCCCCAAGAGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGGAGCCATCCCAGAAACTCTGTCCCCAAGAGAATTC  493