BAC Information

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BAC

Clone NameB6Ng01-329G18
Chromosome9 (Build37)
Map Location 8,943,147 - 8,944,294
singlet/doubletsinglet
Overlap genePgr
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G18.bB6Ng01-329G18.g
ACCGA116391GA116392
length1,2031,128
definitionB6Ng01-329G18.b B6Ng01-329G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataaaaaatggctgagaagctcctaaaaaaaaa
aaaatgttcaacatccttagtcatcagggaaatgcaaatctaaacaaccc
tgagattacacctcataccaatcagaatggctaagctcaaaaactcagtt
gacagcagatgctggtgaggatgtggagaaagaggaacactcctctatta
gtggtgggattgcaagctggtacatccattctggaaatcattttggtggt
tcctcagaaaattggacataatactacctgaggacccactaataccactt
ctgggcatatacccagaagatgctcgaacatgtaataagaatacatgctc
actatgttcattgaggcctcatttataatagccaggagctggaaaaaacc
cagctgtccctcaatagaggaatggatatagaaaatatggtacatttaca
caatggagtattactacttacctattaaaaataatgaattcataaaattc
ttaggcaactggatggaactagaaaatatcaccctgagtgattgtcttag
tcagggtttctattcctgcacaaacatcatgaccaagaagcaagttgggg
aggaaagggtttatttggcttacacttccatgttgctgttcatcaccaaa
ggaagtcaggactggaactcaagcaggtcaggaagcaggagctgatgcag
aggccatggagggatgttccttactggcttgcttctcctggcttgctcag
tctgctcttttatcaaaccaagactaccagcccagagatggtcccaccca
caaggggcctttcccctttggtgactaattgagaaaatgccttacagctg
gatctcatggaggcatttcctcaactgaagctcctttctctgtggtaact
ccagctgtgtcaagtagacacaaaactagccagtacagtgatgtaaccca
aatcacaaaagaacacagatggtatgtattcactgataagtggatattag
cccagagcttcagatacctcagatatatgatccacatgaaactagagaag
agaccagtgttgaatacttcgatcttcttagaagcgtacaaattcactat
gaaggagtaccaaggacaagtgtggaagcagaactgaaggaatggccttc
gagacgtcttacttgggtattcatcaataactgagcacccaaattctcac
gag
gaattcatcagtatttgaatacattgaaatactggtgcctttttgaaaac
cagaataaatgttttacaaactgactggaattttctaaaaaaaaaaaaaa
aaaaaaaaaacttccccaaataaaaaccccaactttctgacatattgatg
attatttcaaatataacttgaataaatataggatgcactcatggttatgc
ccagtgttttcatgagtcaaagagttacctaatattgataactgtgccat
tccagtgtcctgattaatagatcaaatgtttggacaaatattagtgtttg
cattttagggatgagatttatggaaatctagtgacttgccaactttatga
gggaaatatggagcagagaaaatgttccactcgaaggccattttcattta
ttcttttgctttctagttaaatgtttagtggtgtcatgcgctgtcttgag
taagaatccaagttcacagcatcgaataacacagagacttctttaatggg
tattttattttgatgctaaaaaccccccaaaaagttccttaaacaaaaag
gaaacttacggtaaacactggacagagaaatagcacaatgcgcagtgagc
tgagaaaatacagcaatctcagctaatacagtcagagaaacatttgcact
tgaccccactgaggtcttcctaactgcctttacgttgaaaccttcaggct
gatgactctttatgaacaagtcaagcaattcatctaatggacgactttga
acatcaggagaattaattttaaggtgtaaaataaagtatagtgttcttgg
ggaatctttttcttaaagagctaaattgttagaatcttcctaactctaca
acatacctcctgctatgggtgccagcctattcttccaaaagtgcttagaa
gagatgtgatggcccttttcttgtctgcagttacagtagtatataataat
aaataatgacttctggactggccatgtctgcatatcaatctgtcatttat
aaaagctgatttctagtgtcattattacctgatcaagctactcattttaa
tagtgtatatatttaccacagatagatatatgcatctaatgctcatataa
tgacagtcactatggtattcacttcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_8943147_8944294
seq2: B6Ng01-329G18.g_64_1191 (reverse)

seq1  GGGGAAGTGATTACTATTAGTGACTGTCATTATATATGAGCCATCTAAGA  50
      |||||||||| ||| | |||||||||||||  |||||||||    | |||
seq2  GGGGAAGTGAATACCA-TAGTGACTGTCAT--TATATGAGC---ATTAGA  44

seq1  TGCATAATTATACCTTATCCTGTGGTAAATATATACACTAATTTAAAAAT  100
      ||||||  |||    ||| |||||||||||||||||||||   | |||||
seq2  TGCATA--TAT---CTAT-CTGTGGTAAATATATACACTA---TTAAAAT  85

seq1  GAGTAGCTTTGATCAGGTAAAATAATGAACACTAGAAATCAAGCTTTTAT  150
      ||||||| ||||||||||  ||||||| |||||||||||| |||||||||
seq2  GAGTAGC-TTGATCAGGT--AATAATG-ACACTAGAAATC-AGCTTTTAT  130

seq1  AAAATGACAGAATTGATATGCAGACATGGCCAGTCCAG-AGTCATTATTT  199
       ||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  -AAATGACAG-ATTGATATGCAGACATGGCCAGTCCAGAAGTCATTATTT  178

seq1  ATTATTATATACTACTGTAACTGCAGACAAGAAAAGGGCCATCACATCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATACTACTGTAACTGCAGACAAGAAAAGGGCCATCACATCTC  228

seq1  TTCTAAGCACTTTTGGAAGAATAGGCTGGCACCCATAGCAGGAGGTATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCACTTTTGGAAGAATAGGCTGGCACCCATAGCAGGAGGTATGT  278

seq1  TGTAGAGTTAGGAAGATTCTAACAATTTAGCTCTTTAAG-AAAAGATTCC  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTAGAGTTAGGAAGATTCTAACAATTTAGCTCTTTAAGAAAAAGATTCC  328

seq1  CCAAGAACACTATACTTTATTTTACACCTTAAAATTAATTCTCCTGATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACACTATACTTTATTTTACACCTTAAAATTAATTCTCCTGATGT  378

seq1  TCAAAGTCGTCCATTAGATGAATTGCTTGACTTGTTCATAAAGAGTCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCGTCCATTAGATGAATTGCTTGACTTGTTCATAAAGAGTCATC  428

seq1  AGCCTGAAGGTTTCAACGTAAAGGCAGTTAGGAAGACCTCAGTGGGGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGGTTTCAACGTAAAGGCAGTTAGGAAGACCTCAGTGGGGTCA  478

seq1  AGTGCAAATGTTTCTCTGACTGTATTAGCTGAGATTGCTGTATTTTCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAATGTTTCTCTGACTGTATTAGCTGAGATTGCTGTATTTTCTCA  528

seq1  GCTCACTGCGCATTGTGCTATTTCTCTGTCCAGTGTTTACCGTAAGTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGCGCATTGTGCTATTTCTCTGTCCAGTGTTTACCGTAAGTTTC  578

seq1  CTTTTTGTTTAAGGAACTTTTTGGGGGGTTTTTAGCATCAAAATAAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTAAGGAACTTTTTGGGGGGTTTTTAGCATCAAAATAAAATA  628

seq1  CCCATTAAAGAAGTCTCTGTGTTATTCGATGCTGTGAACTTGGATTCTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAGAAGTCTCTGTGTTATTCGATGCTGTGAACTTGGATTCTTA  678

seq1  CTCAAGACAGCGCATGACACCACTAAACATTTAACTAGAAAGCAAAAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGACAGCGCATGACACCACTAAACATTTAACTAGAAAGCAAAAGAA  728

seq1  TAAATGAAAATGGCCTTCGAGTGGAACATTTTCTCTGCTCCATATTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAATGGCCTTCGAGTGGAACATTTTCTCTGCTCCATATTTCCC  778

seq1  TCATAAAGTTGGCAAGTCACTAGATTTCCATAAATCTCATCCCTAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTTGGCAAGTCACTAGATTTCCATAAATCTCATCCCTAAAATG  828

seq1  CAAACACTAATATTTGTCCAAACATTTGATCTATTAATCAGGACACTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTAATATTTGTCCAAACATTTGATCTATTAATCAGGACACTGGA  878

seq1  ATGGCACAGTTATCAATATTAGGTAACTCTTTGACTCATGAAAACACTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGTTATCAATATTAGGTAACTCTTTGACTCATGAAAACACTGG  928

seq1  GCATAACCATGAGTGCATCCTATATTTATTCAAGTTATATTTGAAATAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCATGAGTGCATCCTATATTTATTCAAGTTATATTTGAAATAAT  978

seq1  CATCAATATGTCAGAAAGTTGGGGTTTTTATTTGGGGAAGTTTTTTTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATATGTCAGAAAGTTGGGGTTTTTATTTGGGGAAGTTTTTTTTTT  1028

seq1  TTTTTTTTTTTTTTAGAAAATTCCAGTCAGTTTGTAAAACATTTATTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAGAAAATTCCAGTCAGTTTGTAAAACATTTATTCTG  1078

seq1  GTTTTCAAAAAGGCACCAGTATTTCAATGTATTCAAATACTGATGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAAAGGCACCAGTATTTCAATGTATTCAAATACTGATGAATTC  1128