BAC Information

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BAC

Clone NameB6Ng01-330I17
Chromosome9 (Build37)
Map Location 108,079,452 - 108,216,905
singlet/doubletdoublet
Overlap geneBsn, Dag1, Nicn1, EG434437, Tcta, Rhoa
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, LOC100042108
Downstream geneGpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330I17.bB6Ng01-330I17.g
ACCGA117179GA117180
length1,207760
definitionB6Ng01-330I17.b B6Ng01-330I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,215,680 - 108,216,905)(108,079,452 - 108,080,211)
sequence
gaattcccaatgaggatatttagtgcctcttgcaaaacagtataaaggtc
gttacacctttagaagcaacactttccttggctgtggtggtgagatgaag
tcaaatattgaatacactggagcttctgctcaacttagtgttatcaaggt
aaaaactattaacattagaaaaatttatcatttataccaccatgaccttc
ttctgtaaaaagaaagtaacttttagctaggcatggtggcacacatcttt
aatcccagaagaggtgggaggatctctgaatttgaggccagcctggtcta
cagagtgaattcctggaccgccaggattaccaagagaaaccttgtcttga
aaccttcccacacacaaaaaaaatatgtatttatatgtgtctgcatatgt
atgactatagtaatatacatgtatataaatacacacacatgcctggcaca
gtggcatacatctaaaatctcagactcaggacgatgcaaagggaggtaga
tctcttgagttccaggctagcttggtccacattgtggattccaggtcagc
cagatctacagagaacctgtctcaaaacaacaacagcagcaacaaaacag
atacacatcactcctcccctccactgcacaaatacttagatacaaccact
ctgcaatggaaaaaccaataatagaaagactatttttctgagcagccatt
attgatttgcctgtagttttgtgaccctccatacaaacttcccccttcca
cattagcatgtccactgatgttgtcatggacttcttcacataataaaaat
gtacataatcaatcttacttttcaaatacaataaatgctgtcttctaaaa
gtaagacagatgctgggcagtggtggtgacgcctttaatcccagcacttg
ggaggcagaggcaggcacacttctgagttcgaggccagcctagtctacaa
gtgagttccaggacagccaggctatacagagaaacctgtttcgaaaccaa
aaaaagaaaaaaatataatataaaaagaagaaaaaaagaaactttacatt
tatttattttgtggtggtgagagaggagtcagaggacacttgggaaattt
gcattcaatattggatctcaggaatcaaacaacggaatttgtcagccatg
taacagtacctactgctgaaatttcacagcctgaagctatgcttaccttt
ccttttg
gaattctatccagcttgcaaatgtctgagtgagaacatttttttttaaag
aactgttatttgaagccactgaattttggctgatttattgcacagtaata
tggtgaaatcagataagtactcaaaaccaatccttacaaattaaaaacaa
tctagaataaaggagcttaactttttatcttattaatggcataaccacac
aggaaagactaacttctaatagctcaagacatgagcctatatgtctctgg
aaagatataacctaaagaccaaatataccccaggggatcttaacttatat
tcactagtattattgctagggaaaaaaatagctacattattactttaaaa
taaccatacacgggatccatcccataatcagcctccaaacactgacacca
ttgcatacactagcaagattttgctgaaaggaccctgatgtagctgtttc
ttgtgagactacgccggggcctagcaaacacataagtggatgctcacagt
cagctattagatggatcacagggcccccaatggaggagctagagaaagta
tccaaggagctaaagggaactgcaaccatataggtggaacaacattatga
actaaccagtaccccggagctcttgactctagctacatatgtatcaaaaa
atggcctagttggccatcactggaaagagaggtccattggacttgcaaac
tttatatgccccagtacaggggaacaccagggccaaaaagtgggagtgag
ggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108215680_108216905
seq2: B6Ng01-330I17.b_47_1253 (reverse)

seq1  CAAAAAGAAAGGAAAAGCATAGCTTTCAGGCTGGTTGAGATATCTCAGCA  50
      ||||| ||||||  ||||||||| |||||||    || || || ||||| 
seq2  CAAAAGGAAAGG-TAAGCATAGC-TTCAGGC----TGTGAAATTTCAGC-  43

seq1  AGTAAAGGTACTTGTTACATGAGCCTGACAA--TCTG-TGTTTGATTCCT  97
      |||  |||||| ||||||||  | |||||||  || | ||||||||||||
seq2  AGT--AGGTAC-TGTTACAT--GGCTGACAAATTCCGTTGTTTGATTCCT  88

seq1  GAGA-CCCATAT--GATGCAAATTCCCCAAGTTGTCCTCTGACTC--CTC  142
      |||| || ||||   ||||||||| |||||| |||||||||||||  |||
seq2  GAGATCCAATATTGAATGCAAATTTCCCAAG-TGTCCTCTGACTCCTCTC  137

seq1  TCACCA-CACAAAATAAATAAATGTAAAGTTTTTCTTTTTTTCTTTCTTT  191
      |||||| ||||||||||||||||||||||  ||||||||||||       
seq2  TCACCACCACAAAATAAATAAATGTAAAG--TTTCTTTTTTTC-------  178

seq1  TTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTGGTTTTTCGAAACAGGGT  241
      || ||||| | || | ||||||||||||||| |   |||||||||| |||
seq2  TTCTTTTTATATTATATTTTTTTCTTTTTTTGG---TTTCGAAACA-GGT  224

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGGCTG  291
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TTCTCTGTATAG-CCTGGCTGTCCTGGAACTCAC-TTGTAGACTAGGCTG  272

seq1  GCCTCGAACTCAGAAGTGTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAGTGTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  322

seq1  AAGGCGTCACCACCACTGCCCAGCATCTGTCTTACTTTTAGAAGACAGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTCACCACCACTGCCCAGCATCTGTCTTACTTTTAGAAGACAGCA  372

seq1  TTTATTGTATTTGAAAAGTAAGATTGATTATGTACATTTTTATTATGTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTATTTGAAAAGTAAGATTGATTATGTACATTTTTATTATGTGA  422

seq1  AGAAGTCCATGACAACATCAGTGGACATGCTAATGTGGAAGGGGGAAGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCATGACAACATCAGTGGACATGCTAATGTGGAAGGGGGAAGTT  472

seq1  TGTATGGAGGGTCACAAAACTACAGGCAAATCAATAATGGCTGCTCAGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAGGGTCACAAAACTACAGGCAAATCAATAATGGCTGCTCAGAA  522

seq1  AAATAGTCTTTCTATTATTGGTTTTTCCATTGCAGAGTGGTTGTATCTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTTTCTATTATTGGTTTTTCCATTGCAGAGTGGTTGTATCTAA  572

seq1  GTATTTGTGCAGTGGAGGGGAGGAGTGATGTGTATCTGTTTTGTTGCTGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGCAGTGGAGGGGAGGAGTGATGTGTATCTGTTTTGTTGCTGC  622

seq1  TGTTGTTGTTTTGAGACAGGTTCTCTGTAGATCTGGCTGACCTGGAATCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTTGAGACAGGTTCTCTGTAGATCTGGCTGACCTGGAATCC  672

seq1  ACAATGTGGACCAAGCTAGCCTGGAACTCAAGAGATCTACCTCCCTTTGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGGACCAAGCTAGCCTGGAACTCAAGAGATCTACCTCCCTTTGC  722

seq1  ATCGTCCTGAGTCTGAGATTTTAGATGTATGCCACTGTGCCAGGCATGTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCTGAGTCTGAGATTTTAGATGTATGCCACTGTGCCAGGCATGTG  772

seq1  TGTGTATTTATATACATGTATATTACTATAGTCATACATATGCAGACACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTATATACATGTATATTACTATAGTCATACATATGCAGACACA  822

seq1  TATAAATACATATTTTTTTTGTGTGTGGGAAGGTTTCAAGACAAGGTTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACATATTTTTTTTGTGTGTGGGAAGGTTTCAAGACAAGGTTTC  872

seq1  TCTTGGTAATCCTGGCGGTCCAGGAATTCACTCTGTAGACCAGGCTGGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTAATCCTGGCGGTCCAGGAATTCACTCTGTAGACCAGGCTGGCC  922

seq1  TCAAATTCAGAGATCCTCCCACCTCTTCTGGGATTAAAGATGTGTGCCAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAGAGATCCTCCCACCTCTTCTGGGATTAAAGATGTGTGCCAC  972

seq1  CATGCCTAGCTAAAAGTTACTTTCTTTTTACAGAAGAAGGTCATGGTGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAGCTAAAAGTTACTTTCTTTTTACAGAAGAAGGTCATGGTGGT  1022

seq1  ATAAATGATAAATTTTTCTAATGTTAATAGTTTTTACCTTGATAACACTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATAAATTTTTCTAATGTTAATAGTTTTTACCTTGATAACACTA  1072

seq1  AGTTGAGCAGAAGCTCCAGTGTATTCAATATTTGACTTCATCTCACCACC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCAGAAGCTCCAGTGTATTCAATATTTGACTTCATCTCACCACC  1122

seq1  ACAGCCAAGGAAAGTGTTGCTTCTAAAGGTGTAACGACCTTTATACTGTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGAAAGTGTTGCTTCTAAAGGTGTAACGACCTTTATACTGTT  1172

seq1  TTGCAAGAGGCACTAAATATCCTCATTGGGAATTC  1226
      |||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAGGCACTAAATATCCTCATTGGGAATTC  1207

seq1: chr9_108079452_108080211
seq2: B6Ng01-330I17.g_68_827

seq1  GAATTCTATCCAGCTTGCAAATGTCTGAGTGAGAACATTTTTTTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAGCTTGCAAATGTCTGAGTGAGAACATTTTTTTTTAAAG  50

seq1  AACTGTTATTTGAAGCCACTGAATTTTGGCTGATTTATTGCACAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATTTGAAGCCACTGAATTTTGGCTGATTTATTGCACAGTAATA  100

seq1  TGGTGAAATCAGATAAGTACTCAAAACCAATCCTTACAAATTAAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATCAGATAAGTACTCAAAACCAATCCTTACAAATTAAAAACAA  150

seq1  TCTAGAATAAAGGAGCTTAACTTTTTATCTTATTAATGGCATAACCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATAAAGGAGCTTAACTTTTTATCTTATTAATGGCATAACCACAC  200

seq1  AGGAAAGACTAACTTCTAATAGCTCAAGACATGAGCCTATATGTCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGACTAACTTCTAATAGCTCAAGACATGAGCCTATATGTCTCTGG  250

seq1  AAAGATATAACCTAAAGACCAAATATACCCCAGGGGATCTTAACTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATAACCTAAAGACCAAATATACCCCAGGGGATCTTAACTTATAT  300

seq1  TCACTAGTATTATTGCTAGGGAAAAAAATAGCTACATTATTACTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTATTATTGCTAGGGAAAAAAATAGCTACATTATTACTTTAAAA  350

seq1  TAACCATACACGGGATCCATCCCATAATCAGCCTCCAAACACTGACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATACACGGGATCCATCCCATAATCAGCCTCCAAACACTGACACCA  400

seq1  TTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATGTAGCTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATGTAGCTGTTTC  450

seq1  TTGTGAGACTACGCCGGGGCCTAGCAAACACATAAGTGGATGCTCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACTACGCCGGGGCCTAGCAAACACATAAGTGGATGCTCACAGT  500

seq1  CAGCTATTAGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTA  550

seq1  TCCAAGGAGCTAAAGGGAACTGCAACCATATAGGTGGAACAACATTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCTAAAGGGAACTGCAACCATATAGGTGGAACAACATTATGA  600

seq1  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTACATATGTATCAAAAA  650

seq1  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGTCCATTGGACTTGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGTCCATTGGACTTGCAAAC  700

seq1  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGAG  750

seq1  GGGGAGGGGA  760
      ||||||||||
seq2  GGGGAGGGGA  760