BAC Information

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BAC

Clone NameB6Ng01-331C10
Chromosome9 (Build37)
Map Location 36,988,427 - 36,989,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
Downstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C10.bB6Ng01-331C10.g
ACCGA117601GA117602
length1,151614
definitionB6Ng01-331C10.b B6Ng01-331C10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcacttgatattttcaggctgccactgacctcaagtaatcaaa
aaccataagaagcaagagcttggacaggggtcctgcatgcttcactggtc
ccatgacggggaaatgtccttcctctctcacctaaaactcccagactcct
actggggcactttaaaatcgctgtcagaatccaacctctaaaacgctaca
ttccacgaagaaggtaaatacatacatacatacatacatacatacataca
cacacacacacacgcacacacacatacttacatcaacaatcgtcctacat
taattctaactcagttataagcacagaagcgggaaaataaaagtcaatga
ttgtcaaatgaaaactgacagaaaagaggactttttaatccagaaaactt
tcacactgttatgacaaacaatagagtaaaataaaataaaattaaaacaa
taaaaaagtatacccagcagtgtcctgttaaataattggatgagattcat
cagggtagcaactggcgctgagcgttttttaattttctccctgctggata
ttctcttctcacagtatcaacaaatagattaactgcttgtcagagatgag
gccctagcagagcaaaattgaattctttagtatttattttcgctttatgt
cccctcctcaaagaggaacatctgacattttcccccctctcttttgacag
aagctcatgttgtcactttgtagctcagactgactaaaaactcagtgcat
agcccaggctggcctcaggttcatcatagcaatcccccagcctcagcttc
ctgagtgacaggatgactggtatgaaccatcacgcctggctgagcacttt
ttcaaaaaccccaaatctagaaatgctttcattctgctcctaaggactgg
ttaattgcatcatgcaaacagctctttccatgatactttaatccctgtct
tttcttttgaaggcaatgaactttcaaataggcaaacggcagagcagacc
tagtgcttgcattgtgtatttgtagcaagtaaagaacaaatggagccata
gcgctttgagcaggcaagaatttttgcgaggttcaatactagagttggtg
ggggttaagagagcaagcattccatggtatacacaatagcaacttgttcg
t

gaattctatctttgtcacctaactttgtgaccttgggctacttaactttt
ctaattgcatatagtttccttatttctaaagtagacagatgttgagtatg
gtggctcatatctattatctcagtatgtgggaggctaaggcaggaggagt
accatgagttccagacctggactacacagaatgataccctgtgtcaaaag
agagaaaaaaaaccattaacatatacataagtatgttgtatgtatctcta
tgtgatatatgatatgaatatatgcatatcccatatatcacatagagata
catagatatatgtatatatgtatacatatatgtgtatatatgatgtgtgt
attaaggatctgtagatgaacagaacagataggaaatttattagagtgac
ttacaggctatggtccaatgtctgtctctgatggagaggccaggaatcct
gtagtcattcaatccatgggatttggatatttttgcagtcccattctggt
gctagagtcccagaggatccttagagagctgctattctttagtctgggtt
ggaattccaaagaagttgcttctaataccagtgagtcagcacaggataga
tgagcttgctagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36988427_36989581
seq2: B6Ng01-331C10.b_48_1198

seq1  GAATTCTGCACTTGATATTTTCAGGCTGCCACTGACCTCAAGTAATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTTGATATTTTCAGGCTGCCACTGACCTCAAGTAATCAAA  50

seq1  AACCATAAGAAGCAAGAGCTTGGACAGGGGTCCTGCATGCTTCACTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAGAAGCAAGAGCTTGGACAGGGGTCCTGCATGCTTCACTGGTC  100

seq1  CCATGACGGGGAAATGTCCTTCCTCTCTCACCTAAAACTCCCAGACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACGGGGAAATGTCCTTCCTCTCTCACCTAAAACTCCCAGACTCCT  150

seq1  ACTGGGGCACTTTAAAATCGCTGTCAGAATCCAACCTCTAAAACGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCACTTTAAAATCGCTGTCAGAATCCAACCTCTAAAACGCTACA  200

seq1  TTCCACGAAGAAGGTAAATACATACATACATACATACATACATACATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGAAGAAGGTAAATACATACATACATACATACATACATACATACA  250

seq1  CACACACACACACGCACACACACATACTTACATCAACAATCGTCCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGCACACACACATACTTACATCAACAATCGTCCTACAT  300

seq1  TAATTCTAACTCAGTTATAAGCACAGAAGCGGGAAAATAAAAGTCAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAACTCAGTTATAAGCACAGAAGCGGGAAAATAAAAGTCAATGA  350

seq1  TTGTCAAATGAAAACTGACAGAAAAGAGGACTTTTTAATCCAGAAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATGAAAACTGACAGAAAAGAGGACTTTTTAATCCAGAAAACTT  400

seq1  TCACACTGTTATGACAAACAATAGAGTAAAATAAAATAAAATTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTTATGACAAACAATAGAGTAAAATAAAATAAAATTAAAACAA  450

seq1  TAAAAAAGTATACCCAGCAGTGTCCTGTTAAATAATTGGATGAGATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGTATACCCAGCAGTGTCCTGTTAAATAATTGGATGAGATTCAT  500

seq1  CAGGGTAGCAACTGGCGCTGAGCGTTTTTTAATTTTCTCCCTGCTGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGCAACTGGCGCTGAGCGTTTTTTAATTTTCTCCCTGCTGGATA  550

seq1  TTCTCTTCTCACAGTATCAACAAATAGATTAACTGCTTGTCAGAGATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTCACAGTATCAACAAATAGATTAACTGCTTGTCAGAGATGAG  600

seq1  GCCCTAGCAGAGCAAAATTGAATTCTTTAGTATTTATTTTCGCTTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCAGAGCAAAATTGAATTCTTTAGTATTTATTTTCGCTTTATGT  650

seq1  CCCCTCCTCAAAGAGGAACATCTGACATTTTCCCCCCTCTCTTTTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTCAAAGAGGAACATCTGACATTTTCCCCCCTCTCTTTTGACAG  700

seq1  AAGCTCATGTTGTCACTTTGTAGCTCAGACTGACTAAAAACTCAGTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGTTGTCACTTTGTAGCTCAGACTGACTAAAAACTCAGTGCAT  750

seq1  AGCCCAGGCTGGCCTCAGGTTCATCATAGCAATCCCCCAGCCTCAGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCTGGCCTCAGGTTCATCATAGCAATCCCCCAGCCTCAGCTTC  800

seq1  CTGAGTGACAGGATGACTGGTATGAACCATCACGCCTGGCTGAGCACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGACAGGATGACTGGTATGAACCATCACGCCTGGCTGAGCACTTT  850

seq1  TTCAAAAACCCCAAATCTAGAAATGCTTTCATTCTGCTCCTAAGGACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACCCCAAATCTAGAAATGCTTTCATTCTGCTCCTAAGGACTGG  900

seq1  TTAATTGCATCATGCAAACAGCTCTTTCCATGATACTTTAATCCCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCATCATGCAAACAGCTCTTTCCATGATACTTTAATCCCTGTCT  950

seq1  TTTCTTTTGAAGGCAATGAAC-TTCAAATAGGCAAACGGCAGAGGCAGAC  999
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TTTCTTTTGAAGGCAATGAACTTTCAAATAGGCAAACGGCAGA-GCAGAC  999

seq1  CTAGTGCTTGCATTGTGTATTTGTAGCAAGTAAAG-ACAAATGGAGCCAT  1048
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAGTGCTTGCATTGTGTATTTGTAGCAAGTAAAGAACAAATGGAGCCAT  1049

seq1  AGCGCTTTGAGCAAGCAAGAATTTTGCGGAAGTTCAAATACTAGGAGTGG  1098
      ||||||||||||| |||||||||||   || |||| ||||||||   |||
seq2  AGCGCTTTGAGCAGGCAAGAATTTTTGCGAGGTTC-AATACTAGAGTTGG  1098

seq1  TGGGGG-TAAGAGAGGCAAGGCATTCCATGTAATAACCACAATAAGCAAC  1147
      |||||| ||||||| |||| ||||||||||  |||  |||||| ||||||
seq2  TGGGGGTTAAGAGA-GCAA-GCATTCCATGGTATA--CACAAT-AGCAAC  1143

seq1  TTGTTCGT  1155
      ||||||||
seq2  TTGTTCGT  1151


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