BAC Information

Click to search

BAC

Clone NameB6Ng01-331G09
Chromosome9 (Build37)
Map Location 17,415,340 - 17,416,497
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331G09.bB6Ng01-331G09.g
ACCGA117774GA117775
length1,0071,153
definitionB6Ng01-331G09.b B6Ng01-331G09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgaattctactctgacatgtgtcaatgaaacatcagcaacta
gaggtaaaaattaagacatataacttacagtgcaaattgttgtcattctc
agtaattttaactatgattattacacgactcagagaagtacaatgcttgc
catggattttctctgacttaaaaataggtaattatgagatcatttcttct
ttttttttcttttccattttttattaggaatttagctcatttacatttcc
aatgctataccaaaagtcccccatagccacccacccccactcccctaccc
acccactcccctttttggccctggcattcccctgtactggggcatataaa
gtttgcatgtccaatgggcctctctttccagtgatagccaactaggccat
tttttgatacatatgcagctagagtcaagagctccggggtactggttagt
tcagaatgttttccacctatagggttgcagatccctttagctccttgggt
actttctctagctcctccgttgggggccctgtgatccatccaatagctga
ctgtgatcatccacttctgtgtttgctaggccccggcatagtctcacaag
agacagctacatctgggtcctttcgataacatcttgctagtgtatgcaat
ggtgtcagcgtttggatgctgattatggggtgccctggatatggcagtct
ctacatggtccatcctttcatctcagctccaaactttgtctctgtaactc
cttccaagggtgttttgttcccacttctaaggaggggcatagtgtccaca
cttcagtcgtcatttttcttgagtttcatgtgtttaggaaattgtatctt
acatcttgggtaacctaggtttgggggctaatatccacttagtacatatt
gtgtgagttcctttgtgaatgtgtacctcactcagatgatgccctccagg
tccatccatttggctaggaatttccataattcattctttttgatagatga
gtagtac

gaattccatctctctcccctatggatttcttaggcttcttatttatgcac
acagagatgttaagctattgaaaggaagtagagtttttcctttctagaat
ttaagatatgtggttattacttagcacaaccctggctgtatccaattagt
aaacataaaagaaatatttaaaagagcttcatttccatcaaatatatcct
actcggggacttcagatgccccaggaatgtgaatctgggtcattcaggag
ctcacagagtgtctgctcctgctgttaaaaagaaaatgtcactgtaggaa
aaattaaagacatgatgctatgagagaatgaccagttctagccagcaaac
cataactgaagaaggcaagcctagatcagtagggtcaccaagaaaagaga
aagcattgttatagaaagtcataggtctataaaaggctcacacagagaat
gctgcctactcccctctctgtcatgccccccccccttctgcctaattatc
ttacattaggatctgcagaacggccccacagaaaagaagtgcaaacaata
actagacacatagtaatttgtgcattttcttaaattatttgtttattaag
cctgttcttttgagagggaagctaacaattatctccagctcataagactg
ttggaatatatgtaacttcacagtatgtatgtttaattaaattaaagacc
catgcttattattgtgtccatgacaagcccaggaagctcacttctaagat
tgtaatatggtattcagattgtgtctttaatctcctgggatatgaatatg
tacatatcaaaaaaatgaaaatcagtctttattcaaaacaagtatagaaa
agaatggattaatattcacattaccagatgatattaaatttactgtatga
tcaagtaatagagagggcttaatctattccatttttgtacaagcagccat
gttatttagggccttacgtttcagttttccaaagaaacagggcagctttt
cagaagccacagaacaacaggtctttatcagtagggcctgacattttgtc
aaaatagagaactaggcaaggagtgagtgattcattctatgactatctga
acagagagatatgactcctgaattagaacagtcctgtggtaattgtgcta
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17415340_17416497
seq2: B6Ng01-331G09.g_69_1221

seq1  GAATTCCATCTCTCTCCCCTATGGATTTCTTAGGCTTCTTATTTATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCTCTCCCCTATGGATTTCTTAGGCTTCTTATTTATGCAC  50

seq1  ACAGAGATGTTAAGCTATTGAAAGGAAGTAGAGTTTTTCCTTTCTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGTTAAGCTATTGAAAGGAAGTAGAGTTTTTCCTTTCTAGAAT  100

seq1  TTAAGATATGTGGTTATTACTTAGCACAACCCTGGCTGTATCCAATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATATGTGGTTATTACTTAGCACAACCCTGGCTGTATCCAATTAGT  150

seq1  AAACATAAAAGAAATATTTAAAAGAGCTTCATTTCCATCAAATATATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAAAGAAATATTTAAAAGAGCTTCATTTCCATCAAATATATCCT  200

seq1  ACTCGGGGACTTCAGATGCCCCAGGAATGTGAATCTGGGTCATTCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGGACTTCAGATGCCCCAGGAATGTGAATCTGGGTCATTCAGGAG  250

seq1  CTCACAGAGTGTCTGCTCCTGCTGTTAAAAAGAAAATGTCACTGTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGTGTCTGCTCCTGCTGTTAAAAAGAAAATGTCACTGTAGGAA  300

seq1  AAATTAAAGACATGATGCTATGAGAGAATGACCAGTTCTAGCCAGCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGACATGATGCTATGAGAGAATGACCAGTTCTAGCCAGCAAAC  350

seq1  CATAACTGAAGAAGGCAAGCCTAGATCAGTAGGGTCACCAAGAAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGAAGAAGGCAAGCCTAGATCAGTAGGGTCACCAAGAAAAGAGA  400

seq1  AAGCATTGTTATAGAAAGTCATAGGTCTATAAAAGGCTCACACAGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTTATAGAAAGTCATAGGTCTATAAAAGGCTCACACAGAGAAT  450

seq1  GCTGCCTACTCCCCTCTCTGTCATGCCCCCCCCCCTTCTGCCTAATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTACTCCCCTCTCTGTCATGCCCCCCCCCCTTCTGCCTAATTATC  500

seq1  TTACATTAGGATCTGCAGAACGGCCCCACAGAAAAGAAGTGCAAACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAGGATCTGCAGAACGGCCCCACAGAAAAGAAGTGCAAACAATA  550

seq1  ACTAGACACATAGTAATTTGTGCATTTTCTTAAATTATTTGTTTATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACACATAGTAATTTGTGCATTTTCTTAAATTATTTGTTTATTAAG  600

seq1  CCTGTTCTTTTGAGAGGGAAGCTAACAATTATCTCCAGCTCATAAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTTTGAGAGGGAAGCTAACAATTATCTCCAGCTCATAAGACTG  650

seq1  TTGGAATATATGTAACTTCACAGTATGTATGTTTAATTAAATTAAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATATATGTAACTTCACAGTATGTATGTTTAATTAAATTAAAGACC  700

seq1  CATGCTTATTATTGTGTCCATGACAAGCCCAGGAAGCTCACTTCTAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTATTATTGTGTCCATGACAAGCCCAGGAAGCTCACTTCTAAGAT  750

seq1  TGTAATATGGTATTCAGATTGTGTCTTTAATCTCCTGGGATATGAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGGTATTCAGATTGTGTCTTTAATCTCCTGGGATATGAATATG  800

seq1  TACATATCAAAAAAATGAAAATCAGTCTTTATTCAAAACAAGTATAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCAAAAAAATGAAAATCAGTCTTTATTCAAAACAAGTATAGAAA  850

seq1  AGAATGGATTAATATTCACATTACCAGATGATATTAAATTTACTGTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATTAATATTCACATTACCAGATGATATTAAATTTACTGTATGA  900

seq1  TCAAGTAATAGAGAGGGCTTAATCTATTCCATTTTTGTACAAGCAGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAATAGAGAGGGCTTAATCTATTCCATTTTTGTACAAGCAGCCAT  950

seq1  GTTATTTA-GGCCTTACGTTTCAGTTTTCCAAAGAAACAGGCAAGGCTTT  999
      |||||||| ||||||||||||||||||||||||||||||||  | |||||
seq2  GTTATTTAGGGCCTTACGTTTCAGTTTTCCAAAGAAACAGGGCA-GCTTT  999

seq1  TCAGGAAAGCCACAG-ACAACAGGTCTTTAATCAGTAGGGGCCCTGACAT  1048
      ||||  ||||||||| ||||||||||||| ||||||||||  ||||||||
seq2  TCAG--AAGCCACAGAACAACAGGTCTTT-ATCAGTAGGG--CCTGACAT  1044

seq1  TTGGCCAAAATAGAGGACTA-GCCAGGAGTTGAGTTGATTCATTCCTATG  1097
      || | |||||||||| |||| || ||||| |||| ||||||||| |||||
seq2  TTTGTCAAAATAGAGAACTAGGCAAGGAG-TGAG-TGATTCATT-CTATG  1091

seq1  AC-ATCTGACCAAGAGAGATAATGACTCCTGAATTAGGACAGTTCCT---  1143
      || |||||| | |||||||| |||||||||||||||| |||| ||||   
seq2  ACTATCTGAAC-AGAGAGAT-ATGACTCCTGAATTAGAACAG-TCCTGTG  1138

seq1  GAAATTTTGCTAAGA  1158
      | |||| ||||||||
seq2  GTAATTGTGCTAAGA  1153


| Home | SequenceCutter | Blast | Download |