BAC Information

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BAC

Clone NameB6Ng01-331L20
Chromosome9 (Build37)
Map Location 54,347,133 - 54,347,928
singlet/doubletsinglet
Overlap geneDmxl2
Upstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn
Downstream gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331L20.bB6Ng01-331L20.g
ACCGA118028GA118029
length1,194798
definitionB6Ng01-331L20.b B6Ng01-331L20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcaaatggctaagaatcacctaaagaaatg
tgcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaaactggtaccactctggaaatcagtctggcagttcatcagaa
aagtgggcagagtgttacctgaggacccagctatactactcctaggcata
tacccaaaagattctccagcatataacagggacacatgctccactatgtt
catagcagccttatttataatagcaagaagctggaaagaacccagatgtc
cttcaacagaggaatggatacagaaaatgtggtacagttatacaatggag
tattatacagctattaaaaacaatgaattcatgaaattcttaggcaaatg
gacagaactagaaaatatcatcctgagtgaggtaacccaaccccaaatga
acacacatggtatgcagtcactgataagtagataattagccccaaaactt
agaatacccaagatacaattcacaggccacatgaagctcaagaagaagga
agaacagtgtgggtgcttcagtccttcttagaaagagaacaaaatactca
caggagcaaatatggagacaaagtgtagagcaaagactgaaggaaaagcc
atccagagactgccctacctggggatccaccctgtattcagtcaccaaac
ccagacactgttgtggatgccaagaaatgcttgctgaaaggagcctgata
tagctgcctcatgagaggccctgccagagcctgacaaatacagaggtgga
tgctcacagccaacaattgggactgagcacaaaggtcaccaatgggaaga
gttaagagaaaggactgaagggagctgaaggggtttgcattcccatagga
agacaacatatcaccaactagaccccacagagtccccaggactaagccac
cacaagagtacacatggagggaccatgatcagccgcatatgagcgagatt
tgccttgtcaagcatcacggaggagaggtcctggtctgtgcaaggctcga
tggaatgcccaggttaaggattccttaggcctaggaggacacta
gaattcaaccccctcatgactcacatggtggaaggagaggacaaactcat
gccaggttgccctctgacctccatatgcttactgtgtattcagggttgcc
cctcccccacaatgaaaatcgttaaaaaaaaataccagcccaataatatt
aacataggctggagcttggtctttaagtgtgtggaggctgtttggagaat
agagagagaaaacacacacacacacacacacacacacacacacacataac
ctttgtgtctttcaggaaaggaggaggacctaccgtaggatcataagaga
gtttccttcaagaaataaatctggattttcgattatggagatttcccctt
gtggggtgctggtagtttaccgggttcatctaaaagtgaggcactagctg
ggtgtggtggcacacacacctgtagtacttaggtggtagaggtatgaatc
tatgcttaagataaacgaaacaacaccaaaaaatagtgtttctcttagct
cccggcagagctggtttacagagttaaactagattctgcctggaaaggcc
agtcagtgtaagaaccatcagtgctttgcaggtgcgggcaggccacaggc
catctgtggccatagttcccatttgaatttattctgtcaccgagtctgat
tgtgtaatgcctaccagattcacccctttcagtgtctgtactcgccacct
tgtgttagtgtggaagcttccaaatgggatggatgccttccactcatccc
agccattcattgcttctcatagctgctagggggggtggggtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54347133_54347928
seq2: B6Ng01-331L20.g_68_865 (reverse)

seq1  CAAACAAACCC--ACCCCCCTAGCAGCTATGAGAAGCAATGAATGGCTGG  48
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACCCCACCCCCCCTAGCAGCTATGAGAAGCAATGAATGGCTGG  50

seq1  GATGAGTGGAAGGCATCCATCCCATTTGGAAGCTTCCACACTAACACAAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGGAAGGCATCCATCCCATTTGGAAGCTTCCACACTAACACAAG  100

seq1  GTGGCGAGTACAGACACTGAAAGGGGTGAATCTGGTAGGCATTACACAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGAGTACAGACACTGAAAGGGGTGAATCTGGTAGGCATTACACAAT  150

seq1  CAGACTCGGTGACAGAATAAATTCAAATGGGAACTATGGCCACAGATGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGGTGACAGAATAAATTCAAATGGGAACTATGGCCACAGATGGC  200

seq1  CTGTGGCCTGCCCGCACCTGCAAAGCACTGATGGTTCTTACACTGACTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTGCCCGCACCTGCAAAGCACTGATGGTTCTTACACTGACTGG  250

seq1  CCTTTCCAGGCAGAATCTAGTTTAACTCTGTAAACCAGCTCTGCCGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGGCAGAATCTAGTTTAACTCTGTAAACCAGCTCTGCCGGGAG  300

seq1  CTAAGAGAAACACTATTTTTTGGTGTTGTTTCGTTTATCTTAAGCATAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAAACACTATTTTTTGGTGTTGTTTCGTTTATCTTAAGCATAGA  350

seq1  TTCATACCTCTACCACCTAAGTACTACAGGTGTGTGTGCCACCACACCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCTCTACCACCTAAGTACTACAGGTGTGTGTGCCACCACACCCA  400

seq1  GCTAGTGCCTCACTTTTAGATGAACCCGGTAAACTACCAGCACCCCACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGCCTCACTTTTAGATGAACCCGGTAAACTACCAGCACCCCACAA  450

seq1  GGGGAAATCTCCATAATCGAAAATCCAGATTTATTTCTTGAAGGAAACTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATCTCCATAATCGAAAATCCAGATTTATTTCTTGAAGGAAACTC  500

seq1  TCTTATGATCCTACGGTAGGTCCTCCTCCTTTCCTGAAAGACACAAAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATCCTACGGTAGGTCCTCCTCCTTTCCTGAAAGACACAAAGGT  550

seq1  TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTCTCTCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTCTCTCTAT  600

seq1  TCTCCAAACAGCCTCCACACACTTAAAGACCAAGCTCCAGCCTATGTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAACAGCCTCCACACACTTAAAGACCAAGCTCCAGCCTATGTTAA  650

seq1  TATTATTGGGCTGGTATTTTTTTTTAACGATTTTCATTGTGGGGGAGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGGGCTGGTATTTTTTTTTAACGATTTTCATTGTGGGGGAGGGG  700

seq1  CAACCCTGAATACACAGTAAGCATATGGAGGTCAGAGGGCAACCTGGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGAATACACAGTAAGCATATGGAGGTCAGAGGGCAACCTGGCAT  750

seq1  GAGTTTGTCCTCTCCTTCCACCATGTGAGTCATGAGGGGGTTGAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTCCTCTCCTTCCACCATGTGAGTCATGAGGGGGTTGAATTC  798