BAC Information

Click to search

BAC

Clone NameB6Ng01-332A16
Chromosome9 (Build37)
Map Location 76,538,066 - 76,640,108
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332A16.bB6Ng01-332A16.g
ACCGA118256GA118257
length1,2031,006
definitionB6Ng01-332A16.b B6Ng01-332A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,638,886 - 76,640,108)(76,538,066 - 76,538,650)
sequence
gaattcaaataatccatatgtatttttctcacccgcagaaggacctctaa
aataacattgggctagctatatttctagttgtgttgtgacagctctaggt
aactaaaaattgaaagtagcttgacatgaacaaatccattttcttttgcc
actgggaggaagacaggtgataggagtgggtgctgcccagaggcaggtca
gtgctcagctgcagctttttaactgactggtgtttatcttccattatgaa
gctacgtaactgaagaacacttggttgccttaaagtacccatcactagag
acataacctagaattgttaggatcagttagggaacatgagtacattttgg
tcagattgtcattttttttttgagagaagttgaaagaactaatatttacc
tttcttaaaacacactaaaatgttctaacaaattaaagcaaagacatgta
tcaagattagatcgctaaaagcatctgtactgcatctctaattattatta
aaatgtaaagggaactagatcttttttcttaagtaagaaaatccttcata
gaagcattcttagacaaaacaatgcttcatcagcataaatttaaaaataa
acttaagaacagtaaaattagggaattaactgacagcatttgaattaaaa
acagaaaaaaatgcaattactccagttattacatggaatacaaatgtaaa
tttttaataaaggtttataacaccaattaataattgctactagcagaatg
agaaaaattgcagaccctaccaacaaacattacgagactgacagaatggt
agaaaggaatataacttgctactctgctaaaatgagaaatgtgttttgca
ttcaagtaattatattatgggaagaaaaatgaaatgaataaaattaaaat
aatttccataccttcggtattactgcaaacattttgagagtttaggaatg
gactagagaaatgaatccagtgtttttaaagaagaaaagagaaatggaaa
gatatagtagtatcaagaaagcactacacaaagattgaaaatctttagca
acactataatatagccaacattcatatacatgaatataattagaaaatat
agctatgagtattgctttcatcaacctcaactttcatgggggtaggatgt
gcatgaatctcaatccattcactgaatgtagaaatataggacggaatatc
agc

gaattctacctgagtggatcctgacttggcataggcaaagaatggactgg
gataggtgcccttgctgtggcccttgttttggcatgcatgttgtgtgtat
ggtgtatgtgtcggttgcagaatgcccaggtccacactgccaccatggtg
gtgcaagcttttgccacagtggaagcagggagtcacctcagatttggctt
gctaccatgaagagtgaacaatgaagccatcactctgtagggttgtacgg
ctaagcactgcacagaggttagtctggaagctgtttgacaatctctggga
gttatgtccgattgcatgagggttgagtgtcctagtgtccttccctcagg
aaaaaatggcacaggagcaggtcagggttgctctgggtaaaaacctgtga
gcctaagagtcaatcctgtacatggcccctatttctgcacactggggatc
agacctctatcttcacccacagagcttgttcaaaaaaaaatataaaaggg
ggaattgtagggagccattctggatttcctgatcagcaaggatggaagtc
tgttccaggtagtaaataagcccatgtttggtggatggcccactcttaat
ccctgattggctgagcaagcctgcctggtgaggtgatgtgccctgtggtg
attggtgggggcgtggttgtggctggagtggagaaaaacacttgtaacta
gagaggctggggtatttgaagtaagtagctgcctgagtaaactgctttaa
gacgaaccggtggttgcgttttgcttgctggttgagtgggacgcgacaca
tgatggtcatgaattctatcctttaaaaactctaagcctcatattcttgt
tttccttcataagttgccttggtcatagttttttatcattagcatagaaa
agaaactaagataatcctagttcagttctattttgtattacttacctgca
cttcacaatcagtgtgatctctaataccctctaagcagggaattggtatg
gttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76638886_76640108
seq2: B6Ng01-332A16.b_47_1249 (reverse)

seq1  GCTG-TATTCTGTCCTATA--TCTACATATTTCAGTGATAGTATTTGAGT  47
      |||| ||||| ||||||||  ||||||   ||||||||  | | ||||| 
seq2  GCTGATATTCCGTCCTATATTTCTACA---TTCAGTGAATGGA-TTGAG-  45

seq1  ATCAATGCAACATCTTACACCCATGAAAATTTTAATGTTTAAATGAAAGC  97
      ||  |||| ||||| ||| |||||||||   || | |||   ||||||||
seq2  ATTCATGC-ACATCCTACCCCCATGAAA--GTTGAGGTT--GATGAAAGC  90

seq1  AATACTTCAATAGCTATATTTTCTTATTATATTCATTGTTATAATGGATT  147
      ||||||   ||||||||||||||| |||||||||||   |||    || |
seq2  AATACT--CATAGCTATATTTTCTAATTATATTCATGTATAT----GAAT  134

seq1  GTTTGCTATATTATAGTGTTGCTTAAGGATTTTTCAATCTTTGGTGTAGT  197
      ||| ||||||||||||||||||| |||   |||||||||||| |||||||
seq2  GTTGGCTATATTATAGTGTTGCTAAAG--ATTTTCAATCTTT-GTGTAGT  181

seq1  GCTTTCTTGATACTACTTATATTCTTTCCATTTCTTCTTTTTCTTCTTTA  247
      |||||||||||||||| |||| |||||||||||||   ||||||||||||
seq2  GCTTTCTTGATACTAC-TATA-TCTTTCCATTTCT--CTTTTCTTCTTTA  227

seq1  AAAACACTGGATTCATTTCTCTAGTCCATTCCTAAACTCTCAAAATGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGGATTCATTTCTCTAGTCCATTCCTAAACTCTCAAAATGTTT  277

seq1  GCAGTAATACCGAAGGTATGGAAATTATTTTAATTTTATTCATTTCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATACCGAAGGTATGGAAATTATTTTAATTTTATTCATTTCATTT  327

seq1  TTCTTCCCATAATATAATTACTTGAATGCAAAACACATTTCTCATTTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCATAATATAATTACTTGAATGCAAAACACATTTCTCATTTTAG  377

seq1  CAGAGTAGCAAGTTATATTCCTTTCTACCATTCTGTCAGTCTCGTAATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGCAAGTTATATTCCTTTCTACCATTCTGTCAGTCTCGTAATGT  427

seq1  TTGTTGGTAGGGTCTGCAATTTTTCTCATTCTGCTAGTAGCAATTATTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTAGGGTCTGCAATTTTTCTCATTCTGCTAGTAGCAATTATTAA  477

seq1  TTGGTGTTATAAACCTTTATTAAAAATTTACATTTGTATTCCATGTAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTATAAACCTTTATTAAAAATTTACATTTGTATTCCATGTAATA  527

seq1  ACTGGAGTAATTGCATTTTTTTCTGTTTTTAATTCAAATGCTGTCAGTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTAATTGCATTTTTTTCTGTTTTTAATTCAAATGCTGTCAGTTA  577

seq1  ATTCCCTAATTTTACTGTTCTTAAGTTTATTTTTAAATTTATGCTGATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAATTTTACTGTTCTTAAGTTTATTTTTAAATTTATGCTGATGA  627

seq1  AGCATTGTTTTGTCTAAGAATGCTTCTATGAAGGATTTTCTTACTTAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTTTTGTCTAAGAATGCTTCTATGAAGGATTTTCTTACTTAAGA  677

seq1  AAAAAGATCTAGTTCCCTTTACATTTTAATAATAATTAGAGATGCAGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATCTAGTTCCCTTTACATTTTAATAATAATTAGAGATGCAGTAC  727

seq1  AGATGCTTTTAGCGATCTAATCTTGATACATGTCTTTGCTTTAATTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTTAGCGATCTAATCTTGATACATGTCTTTGCTTTAATTTGTT  777

seq1  AGAACATTTTAGTGTGTTTTAAGAAAGGTAAATATTAGTTCTTTCAACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTTAGTGTGTTTTAAGAAAGGTAAATATTAGTTCTTTCAACTT  827

seq1  CTCTCAAAAAAAAAATGACAATCTGACCAAAATGTACTCATGTTCCCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAAAAAAAATGACAATCTGACCAAAATGTACTCATGTTCCCTAA  877

seq1  CTGATCCTAACAATTCTAGGTTATGTCTCTAGTGATGGGTACTTTAAGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTAACAATTCTAGGTTATGTCTCTAGTGATGGGTACTTTAAGGC  927

seq1  AACCAAGTGTTCTTCAGTTACGTAGCTTCATAATGGAAGATAAACACCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTGTTCTTCAGTTACGTAGCTTCATAATGGAAGATAAACACCAG  977

seq1  TCAGTTAAAAAGCTGCAGCTGAGCACTGACCTGCCTCTGGGCAGCACCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAAAAGCTGCAGCTGAGCACTGACCTGCCTCTGGGCAGCACCCA  1027

seq1  CTCCTATCACCTGTCTTCCTCCCAGTGGCAAAAGAAAATGGATTTGTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCACCTGTCTTCCTCCCAGTGGCAAAAGAAAATGGATTTGTTCA  1077

seq1  TGTCAAGCTACTTTCAATTTTTAGTTACCTAGAGCTGTCACAACACAACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCTACTTTCAATTTTTAGTTACCTAGAGCTGTCACAACACAACT  1127

seq1  AGAAATATAGCTAGCCCAATGTTATTTTAGAGGTCCTTCTGCGGGTGAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAGCTAGCCCAATGTTATTTTAGAGGTCCTTCTGCGGGTGAGA  1177

seq1  AAAATACATATGGATTATTTGAATTC  1223
      ||||||||||||||||||||||||||
seq2  AAAATACATATGGATTATTTGAATTC  1203


seq1: chr9_76538066_76538650
seq2: B6Ng01-332A16.g_487_1071

seq1  ATGGCCCCTATTTCTGCACACTGGGGATCAGACCTCTATCTTCACCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCTATTTCTGCACACTGGGGATCAGACCTCTATCTTCACCCACA  50

seq1  GAGCTTGTTCAAAAAAAAATATAAAAGGGGGAATTGTAGGGAGCCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTTCAAAAAAAAATATAAAAGGGGGAATTGTAGGGAGCCATTCT  100

seq1  GGATTTCCTGATCAGCAAGGATGGAAGTCTGTTCCAGGTAGTAAATAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCTGATCAGCAAGGATGGAAGTCTGTTCCAGGTAGTAAATAAGC  150

seq1  CCATGTTTGGTGGATGGCCCACTCTTAATCCCTGATTGGCTGAGCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTGGTGGATGGCCCACTCTTAATCCCTGATTGGCTGAGCAAGCC  200

seq1  TGCCTGGTGAGGTGATGTGCCCTGTGGTGATTGGTGGGGGCGTGGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGAGGTGATGTGCCCTGTGGTGATTGGTGGGGGCGTGGTTGTG  250

seq1  GCTGGAGTGGAGAAAAACACTTGTAACTAGAGAGGCTGGGGTATTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTGGAGAAAAACACTTGTAACTAGAGAGGCTGGGGTATTTGAAG  300

seq1  TAAGTAGCTGCCTGAGTAAACTGCTTTAAGACGAACCGGTGGTTGCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCTGCCTGAGTAAACTGCTTTAAGACGAACCGGTGGTTGCGTTT  350

seq1  TGCTTGCTGGTTGAGTGGGACGCGACACATGATGGTCATGAATTCTAATC  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTTGCTGGTTGAGTGGGACGCGACACATGATGGTCATGAATTCT-ATC  399

seq1  CTTT-AAAACTCTAAGCCTCATATTCTTGTTTTCCTTCATAAGTTGCCTT  449
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACTCTAAGCCTCATATTCTTGTTTTCCTTCATAAGTTGCCTT  449

seq1  GGTCATAGTTTTTTATCA-TAGCAATAGAAAAGAAACTAAGATAATCCTT  498
      |||||||||||||||||| |||| ||||||||||||||||||||||||| 
seq2  GGTCATAGTTTTTTATCATTAGC-ATAGAAAAGAAACTAAGATAATCCTA  498

seq1  ATTCAGTTCTATTTTGTATTACTTACCTGCAC-TCACAATCAGTGTGATC  547
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTCAGTTCTATTTTGTATTACTTACCTGCACTTCACAATCAGTGTGATC  548

seq1  TCTAATACCCTCTAAGCAGGGGAAATGGTATGGTTTGG  585
      |||||||||||||||||| ||||| ||||||||||| |
seq2  TCTAATACCCTCTAAGCA-GGGAATTGGTATGGTTTTG  585


| Home | SequenceCutter | Blast | Download |