BAC Information

Click to search

BAC

Clone NameB6Ng01-332D07
Chromosome2 (Build37)9 (Build37)
Map Location 41,769,948 - 41,771,10990,637,352 - 90,637,516
singlet/doubletsingletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332D07.bB6Ng01-332D07.g
ACCGA118374GA118375
length1,157753
definitionB6Ng01-332D07.b B6Ng01-332D07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,769,948 - 41,771,109)(90,637,352 - 90,637,516)
sequence
gaattctcttgcttcagaatttaatggattcagtcttcagaattggcgaa
tgttctttatgacatgcaaatattgagactggaaatttaaatggagtagg
acttggtggtaaaggatgaaggaacacagatgtttccagtgttctaattc
caggttcttatgcctttctcatgatgtctctgtaatgctgtctgtctccc
agcagacaagtgaatgtggatcagtgtgctctgtgaagatgctggaccag
tctgttgtatggactctatgccaactcttcacaatacacatgtttgtaag
tgtcttctgtgctaaaagtaaattctcacagagtgtaccaccatgataga
gacaacagttcctgcaacaggagcaatcaggaacagcagactgaggctgg
acccaacactatggttgaatgcctatatagcctgtcacatcaagaaagaa
tcatgaaatttcttcagttacaatctacctttcctgtctcatttggcaat
gcactcctgcttgttgtctgcaataaggaaccctcttgatcttgtttgtt
tgtttgtttgcttgcttgcttgttttttgagacagggtttctctgtgtag
ctctagctgtcctggaactcactctgtagtcaccaggctaacctcaaact
cagaaatccatctacttctgcctcccaagtgttgggattaaaggtgtgtg
ccaccactgtccagcctctcttgatcttattcatttaccagagtcaaatg
tttctaggatattaaaatagctatgtgggatataaaaccatgccaggaag
tctggtaaggtaggtaggtcgagaactggtgtctcagtggacacacattt
gaggcttaagtgacttatgctccctgccagactcctgacttggaacattg
aaacacagaaaataatgtgacttttatagaactttacaactagattatat
acatgtttaatataaatagattttaatattggatattttagtattggata
tagatatcttttatatagtaattctttattcttaaaaaaggtaatatatt
gtgcattaaactttataaacatattgttgtacttatttttaccttgatcc
tgaataatataatatttttattaggtgggcttgaatgaaattgcatgcca
tccatat

gaattcagcttcttgagctctttgtatatattggatattagccccctatc
agatttagggttggtaaaaattctttcccaatctgttggtggcctttttg
tcttattgacaatatcttttgccctacagagctttgcaattttatgaggt
cccatttgttgattcttgatcttgcagcacagaccagtgctgttctgttt
attttccccctttccccatatcttcgaggcttttagcactttctcctcta
taaatttcagtgtctctggttttatgtggagttctttgatccacttagac
ttgtgctttgtgcaatcacccagcatccaccaaacagagtcactattgca
tatgccagcaagattttgctgaaagaaccctgaaaaagctgtctcctgtg
aggctatgccagtgcctggcaaatacagaagtggatgctcacagtcatct
ataggatggaacacatggcccccaatataggagctagagaaagtaaccaa
gagctgaaggggtctgcaaccctataggtggaacaacaatacgaaccaat
cagtacccccagagctcgtgtctctagctgcatatgtagcagaaaaatat
gtcggccatcattgggaagagaggcctagcaaactttatatgccccagta
caggggaactccagggccaagttgtgggagtgagtgggtaggggaacagg
gcgggagagggtataggggacttttggaatagcatttgaaaatgtaaatg
aag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41769948_41771109
seq2: B6Ng01-332D07.b_44_1200

seq1  GAATTCTCTTGCTTCAGAATTTAATGGATTCAGTCTTCAGAATTGGCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTTCAGAATTTAATGGATTCAGTCTTCAGAATTGGCGAA  50

seq1  TGTTCTTTATGACATGCAAATATTGAGACTGGAAATTTAAATGGAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATGACATGCAAATATTGAGACTGGAAATTTAAATGGAGTAGG  100

seq1  ACTTGGTGGTAAAGGATGAAGGAACACAGATGTTTCCAGTGTTCTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGGTAAAGGATGAAGGAACACAGATGTTTCCAGTGTTCTAATTC  150

seq1  CAGGTTCTTATGCCTTTCTCATGATGTCTCTGTAATGCTGTCTGTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTTATGCCTTTCTCATGATGTCTCTGTAATGCTGTCTGTCTCCC  200

seq1  AGCAGACAAGTGAATGTGGATCAGTGTGCTCTGTGAAGATGCTGGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAAGTGAATGTGGATCAGTGTGCTCTGTGAAGATGCTGGACCAG  250

seq1  TCTGTTGTATGGACTCTATGCCAACTCTTCACAATACACATGTTTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTATGGACTCTATGCCAACTCTTCACAATACACATGTTTGTAAG  300

seq1  TGTCTTCTGTGCTAAAAGTAAATTCTCACAGAGTGTACCACCATGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGTGCTAAAAGTAAATTCTCACAGAGTGTACCACCATGATAGA  350

seq1  GACAACAGTTCCTGCAACAGGAGCAATCAGGAACAGCAGACTGAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGTTCCTGCAACAGGAGCAATCAGGAACAGCAGACTGAGGCTGG  400

seq1  ACCCAACACTATGGTTGAATGCCTATATAGCCTGTCACATCAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACACTATGGTTGAATGCCTATATAGCCTGTCACATCAAGAAAGAA  450

seq1  TCATGAAATTTCTTCAGTTACAATCTACCTTTCCTGTCTCATTTGGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATTTCTTCAGTTACAATCTACCTTTCCTGTCTCATTTGGCAAT  500

seq1  GCACTCCTGCTTGTTGTCTGCAATAAGGAACCCTCTTGATCTTGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCTGCTTGTTGTCTGCAATAAGGAACCCTCTTGATCTTGTTTGTT  550

seq1  TGTTTGTTTGCTTGCTTGCTTGTTTTTTGAGACAGGGTTTCTCTGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCTTGCTTGCTTGTTTTTTGAGACAGGGTTTCTCTGTGTAG  600

seq1  CTCTAGCTGTCCTGGAACTCACTCTGTAGTCACCAGGCTAACCTCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTGTCCTGGAACTCACTCTGTAGTCACCAGGCTAACCTCAAACT  650

seq1  CAGAAATCCATCTACTTCTGCCTCCCAAGTGTTGGGATTAAAGGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCATCTACTTCTGCCTCCCAAGTGTTGGGATTAAAGGTGTGTG  700

seq1  CCACCACTGTCCAGCCTCTCTTGATCTTATTCATTTACCAGAGTCAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTGTCCAGCCTCTCTTGATCTTATTCATTTACCAGAGTCAAATG  750

seq1  TTTCTAGGATATTAAAATAGCTATGTGGGATATAAAACCATGCCAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGATATTAAAATAGCTATGTGGGATATAAAACCATGCCAGGAAG  800

seq1  TCTGGTAAGGTAGGTAGGTCGAGAACTGGTGTCTCAGTGGACACACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAGGTAGGTAGGTCGAGAACTGGTGTCTCAGTGGACACACATTT  850

seq1  GAGGCTTAAGTGACTTATGCTCCCTGCCAGACTCCTGACTTGGAACATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTAAGTGACTTATGCTCCCTGCCAGACTCCTGACTTGGAACATTG  900

seq1  AAACACAGAAAATAATGTGACTTTTATAGAACTTTACAACTAGATTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAAAATAATGTGACTTTTATAGAACTTTACAACTAGATTATAT  950

seq1  ACATGTTTAATATAAATAGATTTTAATATTGGATATTTTAGTATTGGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTAATATAAATAGATTTTAATATTGGATATTTTAGTATTGGATA  1000

seq1  TTAGATATTCTTTTATATAGTAATTCTTTATTCTTAAAAAAGGTAATATA  1050
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  -TAGATA-TCTTTTATATAGTAATTCTTTATTCTTAAAAAAGGTAATATA  1048

seq1  TTGTGCATTAAAACTTTATAAACATA-TGTTGTTACTTATTTTTTAACTT  1099
      ||||||||| |||||||||||||||| ||||| |||||||||||  || |
seq2  TTGTGCATT-AAACTTTATAAACATATTGTTG-TACTTATTTTT--ACCT  1094

seq1  TGAATTCTGAATAATAT-ATATTTTTATTA-GTGGGCTTGAATGAAAATT  1147
      || || ||||||||||| |||||||||||| ||||||||||||| |||||
seq2  TG-ATCCTGAATAATATAATATTTTTATTAGGTGGGCTTGAATG-AAATT  1142

seq1  GTAATGCATCCATAT  1162
      | |   |||||||||
seq2  GCATGCCATCCATAT  1157


seq1: chr9_90637352_90637516
seq2: B6Ng01-332D07.g_390_554

seq1  CCACCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGACAGG  50
      |||||||||  || |||||||||||||||||||||||||||||||| || 
seq2  CCACCAAACAGAGTCACTATTGCATATGCCAGCAAGATTTTGCTGAAAGA  50

seq1  ACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAGATAC  100
      ||||||| | ||||||||| ||||||||||||||||||||||||| ||||
seq2  ACCCTGAAAAAGCTGTCTCCTGTGAGGCTATGCCAGTGCCTGGCAAATAC  100

seq1  AGAGGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAAT  150
      ||| |||||||||||||||||||||| |||||||||||| ||||||||||
seq2  AGAAGTGGATGCTCACAGTCATCTATAGGATGGAACACATGGCCCCCAAT  150

seq1  GGAGGAGCTAGAGAA  165
        |||||||||||||
seq2  ATAGGAGCTAGAGAA  165


| Home | SequenceCutter | Blast | Download |