BAC Information

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BAC

Clone NameB6Ng01-332D11
Chromosome4 (Build37)9 (Build37)
Map Location 6,530,614 - 6,530,69135,567,745 - 35,568,261
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneTox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332D11.bB6Ng01-332D11.g
ACCGA118381GA118382
length1,0671,236
definitionB6Ng01-332D11.b B6Ng01-332D11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,530,614 - 6,530,691)(35,567,745 - 35,568,261)
sequence
gaattcaatgaaaatgaagacaaaacatccccaaatttatgggacacatg
aaagcattgttaaaaggaaatttcacaatactaagagcatccataaagaa
actataatattctcataccagaaatttaatagtacacttgaaagctttga
aataaagaagcaaagaggagtagaaggcaggaaataatcaaaataatggc
tgaaatcaaacagttatgaacaaaaaaaaattcaaaagagttagcaaaac
caagagctggttctttgagaaaatcaatatggtagacaaaccctttgcca
aactaatgaaaagagagagagataatatccaaataaataaaataagaaat
gaagagagagacataagcattggaaatgtaaatgagctaaatacctaata
aaaaatgaaaaaaaaaaaaaagaaaattggttgaacttagagacctgtgc
tctcaaatcataaaaattaagaaaaaaaaagaatcattaggtattacttc
aaaaggctgtactccacaataatggaaaattttaataaactggataagtt
tctatagagacacaacttaccaagttaaaccaagattaggaaaactatta
aataacctgatatccctgaaagaaatagaagcaatcattaaaagtctcaa
acccattttaaaaagcctaagatctgatggtttttaaagcagaattctac
cagactttcaaagaagaggtaataccaacactccttaaactattccacaa
aatagaaatggaaggaacactgccaactcactctctgaagccacaaacac
cttgatatcataagcagaaaaagactcagaaatgaaagagaaattgacac
tgatttctcttatgaacattgctgcaaaaatactcgataaattcccaaac
tgagtccaggaagatatccaaaaccttatctgccatgatcaagaagcctt
catctcaggatgcagggatggttcaatatacaaaaatctataaacaaact
gaaacaacaaacaaaatcacccatcacctcatggatgcttaaaggcttta
acaaattcacaccccta

gaattcttaaccaaagaatacagaattgctgagaagcacctgaaaaaaaa
atgctcaacgtccttaatcatcagggaaatgcaaatcaaaacaaccctga
gatttcacctcacaccagtcagaatggctaggatcaaaaattcaggtgac
agcagatgctggcgaggatgtggagaaagaggaacaatcctccattgttg
gtgggattgcaaggttgtataaccactctggatgacagtctggaggttcc
gcagaatgttggacataattctactggaagatccagcaatacctcttctg
ggcatatacccagaagttccaactggtaataagaacacctgctccactat
gttcatagaagcaatatttataatagccagaatctggaaacaacccagat
gtccctcaacagaggaatggatatggaaaatgtgttacatttacataatg
gagtactactcagctattaaaaacaatgaatttatgaaattcttaggcaa
atggatatatctggaggatatcatcctgagtgaggtaacccaatcacaaa
agaagtcacttgatatgccctcactgatatgtggatattagcccagatac
ctagaatacccaagatacaacttccaatacacaagaaaatcaagaaaagt
gaagaccaatgggtggatacttaattcttccctagaatagagaataaaat
atccatggaaggagttgcagagacaaagtttggagctaagacgaaaggat
ggactatccagagactaccccacccgggaatccatcccataatcagcccc
caaccccagacactattgcacaatgccagaaagattttgctgaagggacc
ctgttatagctgtctcatatgaggctatgccagtgcctggcaaatacaga
agtgaatgcttaatgtcatctataggatggaatacagggccccagtgtag
gagctagagaagtacccaagagctgaaagggtctgcaaccctatagtaga
atagcaatatgaactatcagtacccagagatcatgtctctagctgcatat
gtagcagaagactttgggaagagaggctgtaccttccccagctgagctgc
tgagcagactgactttgctgccactcaggaaatactaagatgaccctcct
agaataacaattggtcagccatgtacagtgtttccccttcagaatcgttt
actggctaggggagtccagagaccatatttctctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6530614_6530691
seq2: B6Ng01-332D11.b_409_531 (reverse)

seq1  AATGAATTCTTTTTT--------TTTTTAT--------------------  22
      |||| ||||||||||        |||||||                    
seq2  AATG-ATTCTTTTTTTTTCTTAATTTTTATGATTTGAGAGCACAGGTCTC  49

seq1  ------------------TTTTCTTTTTTTTTCCATTTTTATTAGGTATT  54
                        |||| ||||||||||  |||||||||||||||
seq2  TAAGTTCAACCAATTTTCTTTTTTTTTTTTTTCATTTTTTATTAGGTATT  99

seq1  TAGCTCATTTACATTTCTAATGCT  78
      ||||||||||||||||| ||||||
seq2  TAGCTCATTTACATTTCCAATGCT  123


seq1: chr9_35567745_35568261
seq2: B6Ng01-332D11.g_1038_1301 (reverse)

seq1  ACAGAGAAATATGGTCTCAGTATTCTCACTGGTACAGAATCTGGCACTGC  50
      |||||||||||||||||| | | || |             || || | | 
seq2  ACAGAGAAATATGGTCTCTGGACTCCC-------------CTAGC-CAGT  36

seq1  ACACATTTTTATTCTAAGCACACATGAGACTTGGGATCTGTCTAGCAAAC  100
      | ||      ||||| |         ||    ||||              
seq2  AAAC-----GATTCTGA---------AG----GGGA--------------  54

seq1  TGGCCTCAGAGAACAGGATTCCTGTATCTCAGAGCTTATGCTTACAGTGT  150
                 ||||      |||||   ||  ||| |  |  |  || |
seq2  -----------AACA------CTGTA---CATGGCTGA--CCAATTGT-T  81

seq1  CTTCTCAGCGACTCATCTTAGGAAGAGTCTTAGTATCAAACTTTTCTATC  200
       ||||  | |  ||||||||| |                   ||||   |
seq2  ATTCTAGGAGGGTCATCTTAGTA-------------------TTTC---C  109

seq1  TGAGAGGTCAGAGGCTTCTGCATTCTTTTTTTCCTTTTTTTAAAAATTAG  250
      |||| || |||                                       
seq2  TGAGTGG-CAG---------------------------------------  119

seq1  ATATTTGCTTTATATACATTTCAAATGATATCCCGAAAGTTCCCTATACC  300
                           ||||         |  |||          
seq2  ---------------------CAAA---------GTCAGT----------  129

seq1  CTCCCCCTGCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGG  350
                 ||||||  |  | || |             |||    ||
seq2  -----------CTGCTCAGCAGCTCAGC-------------TGG----GG  151

seq1  CATCCCCTGTACTGGGTTATATAACATTTGCAAGACCAAGGGGCCTCTCT  400
       |            |||      |||                ||||||||
seq2  AA------------GGT------ACA----------------GCCTCTCT  167

seq1  TCCCAGTGATGACCTACTAGGCCATCTTCAGCTACATATGCAGCTAGAGA  450
      |||||  |                ||||| ||||||||||||||||||||
seq2  TCCCAAAG----------------TCTTCTGCTACATATGCAGCTAGAGA  201

seq1  CATGAGCTTTGGGGGTACTGGTTAGTTCATATTGCTGTTCTACCTATAGG  500
      ||||| || |  ||||||| | |||||||||||||| ||||| |||||||
seq2  CATGATCTCT--GGGTACT-GATAGTTCATATTGCTATTCTA-CTATAGG  247

seq1  GTTGCAGACCCCTTCAG  517
      ||||||||||| |||||
seq2  GTTGCAGACCCTTTCAG  264


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