BAC Information

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BAC

Clone NameB6Ng01-332D21
Chromosome9 (Build37)
Map Location 49,628,562 - 49,823,921
singlet/doubletdoublet
Overlap genenone
Upstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332D21.bB6Ng01-332D21.g
ACCGA118397GA118398
length809813
definitionB6Ng01-332D21.b B6Ng01-332D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,823,113 - 49,823,921)(49,628,562 - 49,629,371)
sequence
gaattcctcagatttgctaggaactgacaggacagttgggctacgtgtga
gatcagctagactatagaaaaagtccatagttctccaagtaggtcagaag
cattagttgtagaaagctgcattaagtcactgctcccaagcctgcaacct
ttcaccctgggctcaattctgcatgtggcactgtagagaagaagggagct
agagaaggggccagaaccatgccccttgccagctgcctaaccaagattat
ggttacataataaatccaaggccaggcgtatttatgaggctctcagaagc
tgcagtaacaatatcatttagaaaacatttatgctcccaagatgaaggca
atccctccccctcctttatttataaggcatgctgggtaattaagtgggcg
ctgggaaggaaggtggttgggagaagatggcctctaaataatcctgcctg
gtaaagccaccatctgttgttgtgcagcggggatagcccacatacagcgg
catggtttataagcagtgcaagaatcaagggtacaggagaaatttcccaa
ggaataaccagcgggctggcacagatgttgactgagcaactggatgatgg
ggaggtgtcctactcctggaacccagccttgtgtctggcatctggcagtt
gtctgatgcatgttggcgctttaattcacccaaccattgttacagacact
gcttgatgagtgcctacagaccccaggctctgcacttggcacaggctact
tgatgatcatgaataaaacagataaaatgatgtgtgtgtgtgtgtgtgtg
tgtgtgtgt
gaattcagatcaatcttagaacccattcaaaggtacagacacacacacac
acactcacacacacacacaaacacacacaaacacacacacacacaaacac
acacacacaaacacacacacacacacacacacacacacactcacaagcct
ggtgaattcagatcaatcttagaacccattcaaaggtacagacacacaca
cacacacacacacacacacacacacacaagcctggtgaattcagatcaat
cttagaacccattcaaaggtacagacacacacacacacactcacacacac
acacacactcacacacacacacacacacacacacaagcctggtgaattca
gatcaatcttagaacccattcaaaggtacagacacacacacacacacact
cacacacacacacacaaacacacacacacacacacaaacacacacacaca
ctcacaagcctggtgaattcagatcaatcttagaacccattcaaaggtac
agacacacacacacacacacacacacacacacacacacaagcctggtgaa
ttcagatcaatcttagaacccattcaaaggtacagacacacacacacaca
ctcacacacacacacacacacacacacaagcctggtgaattcagatcaat
cttagaacccattcaaaggtacagacacacacacacacacacacacacac
acacacacacatgcacacacacacacacacacacgccgtggtgaaattca
gatcaatcttagaaacccattcagagggtacagacacacacacacacaca
cctctctcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_49823113_49823921
seq2: B6Ng01-332D21.b_52_860 (reverse)

seq1  ACACACACACACACACACACACACACACATCATTTTATCTGTTTTATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATCATTTTATCTGTTTTATTCA  50

seq1  TGATCATCAAGTAGCCTGTGCCAAGTGCAGAGCCTGGGGTCTGTAGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATCAAGTAGCCTGTGCCAAGTGCAGAGCCTGGGGTCTGTAGGCAC  100

seq1  TCATCAAGCAGTGTCTGTAACAATGGTTGGGTGAATTAAAGCGCCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCAGTGTCTGTAACAATGGTTGGGTGAATTAAAGCGCCAACAT  150

seq1  GCATCAGACAACTGCCAGATGCCAGACACAAGGCTGGGTTCCAGGAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGACAACTGCCAGATGCCAGACACAAGGCTGGGTTCCAGGAGTAG  200

seq1  GACACCTCCCCATCATCCAGTTGCTCAGTCAACATCTGTGCCAGCCCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTCCCCATCATCCAGTTGCTCAGTCAACATCTGTGCCAGCCCGCT  250

seq1  GGTTATTCCTTGGGAAATTTCTCCTGTACCCTTGATTCTTGCACTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCTTGGGAAATTTCTCCTGTACCCTTGATTCTTGCACTGCTTA  300

seq1  TAAACCATGCCGCTGTATGTGGGCTATCCCCGCTGCACAACAACAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATGCCGCTGTATGTGGGCTATCCCCGCTGCACAACAACAGATGG  350

seq1  TGGCTTTACCAGGCAGGATTATTTAGAGGCCATCTTCTCCCAACCACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACCAGGCAGGATTATTTAGAGGCCATCTTCTCCCAACCACCTT  400

seq1  CCTTCCCAGCGCCCACTTAATTACCCAGCATGCCTTATAAATAAAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGCGCCCACTTAATTACCCAGCATGCCTTATAAATAAAGGAGG  450

seq1  GGGAGGGATTGCCTTCATCTTGGGAGCATAAATGTTTTCTAAATGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGATTGCCTTCATCTTGGGAGCATAAATGTTTTCTAAATGATATT  500

seq1  GTTACTGCAGCTTCTGAGAGCCTCATAAATACGCCTGGCCTTGGATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCAGCTTCTGAGAGCCTCATAAATACGCCTGGCCTTGGATTTAT  550

seq1  TATGTAACCATAATCTTGGTTAGGCAGCTGGCAAGGGGCATGGTTCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACCATAATCTTGGTTAGGCAGCTGGCAAGGGGCATGGTTCTGGC  600

seq1  CCCTTCTCTAGCTCCCTTCTTCTCTACAGTGCCACATGCAGAATTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTAGCTCCCTTCTTCTCTACAGTGCCACATGCAGAATTGAGCC  650

seq1  CAGGGTGAAAGGTTGCAGGCTTGGGAGCAGTGACTTAATGCAGCTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAAAGGTTGCAGGCTTGGGAGCAGTGACTTAATGCAGCTTTCTA  700

seq1  CAACTAATGCTTCTGACCTACTTGGAGAACTATGGACTTTTTCTATAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATGCTTCTGACCTACTTGGAGAACTATGGACTTTTTCTATAGTC  750

seq1  TAGCTGATCTCACACGTAGCCCAACTGTCCTGTCAGTTCCTAGCAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATCTCACACGTAGCCCAACTGTCCTGTCAGTTCCTAGCAAATCT  800

seq1  GAGGAATTC  809
      |||||||||
seq2  GAGGAATTC  809

seq1: chr9_49628562_49629371
seq2: B6Ng01-332D21.g_69_881

seq1  GAATTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACAC  50

seq1  ACACTCACACACACACACAAACACACACAAACACACACACACACAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACACAAACACACACAAACACACACACACACAAACAC  100

seq1  ACACACACAAACACACACACACACACACACACACACACACTCACAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACACACACACACACACACACACACACACACTCACAAGCCT  150

seq1  GGTGAATTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACA  200

seq1  CACACACACACACACACACACACACACAAGCCTGGTGAATTCAGATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAGCCTGGTGAATTCAGATCAAT  250

seq1  CTTAGAACCCATTCAAAGGTACAGACACACACACACACACTCACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACCCATTCAAAGGTACAGACACACACACACACACTCACACACAC  300

seq1  ACACACACTCACACACACACACACACACACACACAAGCGTGGTGAATTCA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACACACACTCACACACACACACACACACACACACAAGCCTGGTGAATTCA  350

seq1  GATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACACACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACACACACACT  400

seq1  CACACACACACACACAAACACACACACACACACACAAACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAACACACACACACACACACAAACACACACACACA  450

seq1  CTCACAAGCCTGGTGAATTCATATCAATCTTAGAACCCATTCACAGGTAC  500
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CTCACAAGCCTGGTGAATTCAGATCAATCTTAGAACCCATTCAAAGGTAC  500

seq1  AGACACACACACACACACACACACACACACACACACACAAGCCTGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACACACACACACACACACACACACACACACAAGCCTGGTGAA  550

seq1  TTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCAATCTTAGAACCCATTCAAAGGTACAGACACACACACACACA  600

seq1  CTCACACACACACACACACACACACACAAGCCTGGTGAATTCAGATCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACACACACACACACAAGCCTGGTGAATTCAGATCAAT  650

seq1  CTTAGAACCCATTCAAAGGTACAGACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACCCATTCAAAGGTACAGACACACACACACACACACACACACAC  700

seq1  ACACACACACATGCACACACACACACACACACACGCC-TGGTG-AATTCA  748
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  ACACACACACATGCACACACACACACACACACACGCCGTGGTGAAATTCA  750

seq1  GATCAATCTTAG-AACCCATTCA-AAGGTACAGACACACACACACACACA  796
      |||||||||||| |||||||||| | ||||||||||||||||||||||||
seq2  GATCAATCTTAGAAACCCATTCAGAGGGTACAGACACACACACACACACA  800

seq1  CACTCACTCACACA  810
      | ||| ||||||||
seq2  C-CTCTCTCACACA  813