BAC Information

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BAC

Clone NameB6Ng01-333K02
Chromosome9 (Build37)
Map Location 94,247,508 - 94,405,154
singlet/doubletdoublet
Overlap geneEG384968
Upstream geneLOC674371, LOC384967
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088, 2610101N10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333K02.bB6Ng01-333K02.g
ACCGA119375GA119376
length1,153877
definitionB6Ng01-333K02.b B6Ng01-333K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,247,508 - 94,248,658)(94,404,280 - 94,405,154)
sequence
gaattctcattacaaatgagtgtcattgtaagtgccttcctctttacttt
gcagtcaagctaactacatcctaatggatgaagtgtggatggtagacata
attgtcacatctaagcatcaaacattttgcacatgagtcctgtggttctt
ctttcttcttttcttagctgtataaagacttgatcaccctagatgaggag
agctggaggtacctgattctttacatacaaacctccttaccaaatacctt
attggactttgaacttttatataaagaaggatatatcaggttttaaaagt
ggtctgttatgctgtcaagtttaatctaacagacttagttacttttctat
tgtgatgataaaatatcatgaccaaggacatttacagaagaaagtactta
tttgggacttacagtttttgagggtgagagtacataaccatgaccatcat
taaggaatcatagcagtagtcatgcaatcatggcactggaacagtagctg
ggagctcatcttgagacataaccatgagacaaaaagagggcatttgggta
ttgtatgagtcttctgaagccccaaagcctaaccccagtaacatatctct
ttcaacaaagccacatctcccaatccttcccaaacagttccaccaacttg
ggaccagtgttaaaatatacaagactttgggagccattttcactagacaa
tgagtgccttgctttaaaattccatctttcagtgcgagaaagattgttca
actgtcaagagcactggtagcctttctagaggaactgaattcaattcccc
gaacccacttgacaactcacaatgatctattgtcctttcctagcctccac
atgatgtacagacataagtgcaggaaaacacccataggcataaagtaaaa
actagaaaaaaaatctcaaaaaaatagtttttaaagtagttcatagttag
catacaaactaattgggtttcgtgatcacatattcactcatgtgtatcat
catcctttgttcccatcagtcctcccctctctctcctacagcctctttgc
tgatcccttttcctactagtatataaaggttaaatcttttgccatatatt
ggtgaggtggcctgtcatgagctcacccacagactcctctcaatcgagag
aaa

gaattcaggtactgtgggccctgtctgttccgtaactgagggaccatctt
tgaaagaaaagaggattcaagtgctttaaaggggcctaggtgggactttg
aaacataagcttcagtgatatggtttatgaagaatgagggttttttttaa
aaaccttataaaactttcattttagttttacaaaataatacatgcataat
gtataaagtatatccatatattcatatcagagccagcctaatgagctgtg
cagagaactgttacctgctgcattttttatttttgatgtattcatcttca
ttttgcatttctgtaatgcggtgattatgtctgggtgctgctcagtttct
gtcagcctgacacaaacaagagacccctgggaagcagatgccgatcgagg
catcgcctctaccagcgtggcctgtgggcatatctgtggtccacccactg
gagtcagtcctacccctgggaaggtggtcctgggtgttttttgtttgttt
gtttgtttgtttgtttgtttgtttaaaggtagtttggactatgagcctgg
aagcaagccagtcagcagagtcctccgtgggctctctgctttagttgctg
cctccagaatgctgccatgagttcctgccctgggtctcctcaagagtgaa
cctgtaagccaaaaaaaaaaaaaaacctctctcctcccctcaatgtatac
atatactagtttaattgtgaagaagagtcctcatgctctgatatccaaca
tcgtttgcaatgaggcatttctcctctgacgatgaagattctttatttct
tttttttttttccatttttttattagggttttagctcattttacatttcc
aatggcttataccaaaaagttcccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94247508_94248658
seq2: B6Ng01-333K02.b_47_1199

seq1  GAATTCTCATTACAAATGAGTGTCATTGTAAGTGCCTTCCTCTTTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTACAAATGAGTGTCATTGTAAGTGCCTTCCTCTTTACTTT  50

seq1  GCAGTCAAGCTAACTACATCCTAATGGATGAAGTGTGGATGGTAGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAGCTAACTACATCCTAATGGATGAAGTGTGGATGGTAGACATA  100

seq1  ATTGTCACATCTAAGCATCAAACATTTTGCACATGAGTCCTGTGGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACATCTAAGCATCAAACATTTTGCACATGAGTCCTGTGGTTCTT  150

seq1  CTTTCTTCTTTTCTTAGCTGTATAAAGACTTGATCACCCTAGATGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTTCTTAGCTGTATAAAGACTTGATCACCCTAGATGAGGAG  200

seq1  AGCTGGAGGTACCTGATTCTTTACATACAAACCTCCTTACCAAATACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGTACCTGATTCTTTACATACAAACCTCCTTACCAAATACCTT  250

seq1  ATTGGACTTTGAACTTTTATATAAAGAAGGATATATCAGGTTTTAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTTTGAACTTTTATATAAAGAAGGATATATCAGGTTTTAAAAGT  300

seq1  GGTCTGTTATGCTGTCAAGTTTAATCTAACAGACTTAGTTACTTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTATGCTGTCAAGTTTAATCTAACAGACTTAGTTACTTTTCTAT  350

seq1  TGTGATGATAAAATATCATGACCAAGGACATTTACAGAAGAAAGTACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGATAAAATATCATGACCAAGGACATTTACAGAAGAAAGTACTTA  400

seq1  TTTGGGACTTACAGTTTTTGAGGGTGAGAGTACATAACCATGACCATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACTTACAGTTTTTGAGGGTGAGAGTACATAACCATGACCATCAT  450

seq1  TAAGGAATCATAGCAGTAGTCATGCAATCATGGCACTGGAACAGTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATCATAGCAGTAGTCATGCAATCATGGCACTGGAACAGTAGCTG  500

seq1  GGAGCTCATCTTGAGACATAACCATGAGACAAAAAGAGGGCATTTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCATCTTGAGACATAACCATGAGACAAAAAGAGGGCATTTGGGTA  550

seq1  TTGTATGAGTCTTCTGAAGCCCCAAAGCCTAACCCCAGTAACATATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAGTCTTCTGAAGCCCCAAAGCCTAACCCCAGTAACATATCTCT  600

seq1  TTCAACAAAGCCACATCTCCCAATCCTTCCCAAACAGTTCCACCAACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAGCCACATCTCCCAATCCTTCCCAAACAGTTCCACCAACTTG  650

seq1  GGACCAGTGTTAAAATATACAAGACTTTGGGAGCCATTTTCACTAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGTGTTAAAATATACAAGACTTTGGGAGCCATTTTCACTAGACAA  700

seq1  TGAGTGCCTTGCTTTAAAATTCCATCTTTCAGTGCGAGAAAGATTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCTTGCTTTAAAATTCCATCTTTCAGTGCGAGAAAGATTGTTCA  750

seq1  ACTGTCAAGAGCACTGGTAGCCTTTCTAGAGGAACTGAATTCAATTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAGAGCACTGGTAGCCTTTCTAGAGGAACTGAATTCAATTCCCC  800

seq1  GAACCCACTTGACAACTCACAATGATCTATTGTCCTTTCCTAGCCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACTTGACAACTCACAATGATCTATTGTCCTTTCCTAGCCTCCAC  850

seq1  ATGATGTACAGACATAAGTGCAGGAAAAACACCCATAGGCATAAAGTAAA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGATGTACAGACATAAGTGCAGG-AAAACACCCATAGGCATAAAGTAAA  899

seq1  AACTAAGAAAAAAAATCTCAAAAAAATAGTTTTTAAAGTAGTTCATAGTT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACT-AGAAAAAAAATCTCAAAAAAATAGTTTTTAAAGTAGTTCATAGTT  948

seq1  AGCATACAAACTAATT-GGTTTCGTGATCACATATTCACTCATGTGTATC  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCATACAAACTAATTGGGTTTCGTGATCACATATTCACTCATGTGTATC  998

seq1  ATCATCCTTTGTTCCCATCAGTCCTCCCCTCCTCTCCCCTACAGCCTCTT  1049
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  ATCATCCTTTGTTCCCATCAGTCCTCCCCT-CTCTCTCCTACAGCCTCTT  1047

seq1  TGCTGATCCTTTTCCTTACTTAGTATATAAA-GTTAAATCTTTTG-CATA  1097
      ||||||||| ||| | ||| ||||||||||| ||||||||||||| ||||
seq2  TGCTGATCCCTTTTCCTAC-TAGTATATAAAGGTTAAATCTTTTGCCATA  1096

seq1  TATTGGTGAGGTGG-CTGTCATGGAGCACA-CCACAGACCTCTCTC-ATC  1144
      |||||||||||||| ||||||| |||| || ||||||||  ||||| |||
seq2  TATTGGTGAGGTGGCCTGTCAT-GAGCTCACCCACAGACTCCTCTCAATC  1145

seq1  -AGAGAAA  1151
       |||||||
seq2  GAGAGAAA  1153


seq1: chr9_94404280_94405154
seq2: B6Ng01-333K02.g_70_946 (reverse)

seq1  AAGGGGGAC-TTTTGGTATA--GCATTGGAAATGT-AAATGAGCTAAATA  46
      |||||| || ||||||||||   |||||||||||| ||||||||||||  
seq2  AAGGGGAACTTTTTGGTATAAGCCATTGGAAATGTAAAATGAGCTAAAAC  50

seq1  CCTAAT-AAAAAATGGAAAAAAAAAAAAAAAAAAAAAAAGAATCTTCATC  95
      |||||| |||||||||   |||||||||||| ||| ||||||||||||||
seq2  CCTAATAAAAAAATGG---AAAAAAAAAAAAGAAATAAAGAATCTTCATC  97

seq1  GTCAGAGGAGAAATGCCTCATTGCAAACGATGTTGGATATCAGAGCATGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGAGAAATGCCTCATTGCAAACGATGTTGGATATCAGAGCATGA  147

seq1  GGACTCTTCTTCACAATTAAACTAGTATATGTATACATTGAGGGGAGGAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTCTTCACAATTAAACTAGTATATGTATACATTGAGGGGAGGAG  197

seq1  AGAGGTTTTTTTTTTTTTTTGGCTTACAGGTTCACTCTTGAGGAGACCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTTTTTTTTTTTTTGGCTTACAGGTTCACTCTTGAGGAGACCCA  247

seq1  GGGCAGGAACTCATGGCAGCATTCTGGAGGCAGCAACTAAAGCAGAGAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAACTCATGGCAGCATTCTGGAGGCAGCAACTAAAGCAGAGAGC  297

seq1  CCACGGAGGACTCTGCTGACTGGCTTGCTTCCAGGCTCATAGTCCAAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGGACTCTGCTGACTGGCTTGCTTCCAGGCTCATAGTCCAAACT  347

seq1  ACCTTTAAACAAACAAACAAACAAACAAACAAACAAACAAAAAACACCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAACAAACAAACAAACAAACAAACAAACAAACAAAAAACACCCA  397

seq1  GGACCACCTTCCCAGGGGTAGGACTGACTCCAGTGGGTGGACCACAGATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCTTCCCAGGGGTAGGACTGACTCCAGTGGGTGGACCACAGATA  447

seq1  TGCCCACAGGCCACGCTGGTAGAGGCGATGCCTCGATCGGCATCTGCTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGGCCACGCTGGTAGAGGCGATGCCTCGATCGGCATCTGCTTC  497

seq1  CCAGGGGTCTCTTGTTTGTGTCAGGCTGACAGAAACTGAGCAGCACCCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTCTCTTGTTTGTGTCAGGCTGACAGAAACTGAGCAGCACCCAG  547

seq1  ACATAATCACCGCATTACAGAAATGCAAAATGAAGATGAATACATCAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCACCGCATTACAGAAATGCAAAATGAAGATGAATACATCAAAA  597

seq1  ATAAAAAATGCAGCAGGTAACAGTTCTCTGCACAGCTCATTAGGCTGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATGCAGCAGGTAACAGTTCTCTGCACAGCTCATTAGGCTGGCT  647

seq1  CTGATATGAATATATGGATATACTTTATACATTATGCATGTATTATTTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGAATATATGGATATACTTTATACATTATGCATGTATTATTTTG  697

seq1  TAAAACTAAAATGAAAGTTTTATAAGGTTTTTAAAAAAAACCCTCATTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAAAATGAAAGTTTTATAAGGTTTTTAAAAAAAACCCTCATTCT  747

seq1  TCATAAACCATATCACTGAAGCTTATGTTTCAAAGTCCCACCTAGGCCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACCATATCACTGAAGCTTATGTTTCAAAGTCCCACCTAGGCCCC  797

seq1  TTTAAAGCACTTGAATCCTCTTTTCTTTCAAAGATGGTCCCTCAGTTACG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCACTTGAATCCTCTTTTCTTTCAAAGATGGTCCCTCAGTTACG  847

seq1  GAACAGACAGGGCCCACAGTACCTGAATTC  875
      ||||||||||||||||||||||||||||||
seq2  GAACAGACAGGGCCCACAGTACCTGAATTC  877


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