BAC Information

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BAC

Clone NameB6Ng01-333O09
Chromosome9 (Build37)
Map Location 116,706,707 - 116,707,794
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O09.bB6Ng01-333O09.g
ACCGA119541GA119542
length9541,206
definitionB6Ng01-333O09.b B6Ng01-333O09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctcaaaagaagagaacacaagatttaaggggtggagagatgg
ctcagaggttaggagtactgggtggtcctgcagggaacccaggctcaatt
tctatcacccacatatcagccacaatcaactgtaattccaattctaggag
atctaacatccttttctgacttccacagtcactgcatgcacagataatga
tgcaaattttgaaaacagttaaagaaaaaaaatgaaataacataaaacaa
cccctcttaaatattactaaagcccacttactatctgaaattaaaacaaa
tacccaattgggttggatgttttatggtgtctgttttacatatgagtttt
atgaactttgtgtgtgtgcaggcatgcatgtgtgtgtgcatgtatgtgtg
tgtatgtgcacacacatgtgtatgcatgtatgtgtatgtgtgtgtgcgtg
tgtatagatgtgtgacatgatgctttgaatggcagtcaaaaccaactcag
aagttggtcgtgacgtcccttattggtcgcaacgtcccttgtgcgggttc
tagtgattgagcgcaggttgtcaggcttggcaataagcatctttacccac
tgagccatcgtgccagcccccatcggaggttttctcccacaatgcaatgt
agcatctgagcatagcaatatggttgtatttttgccaaccgtgtagcctt
atacttcctggctagagttatgtttctggacttcgaatgaagtatgaagg
gaacatcgatgctgttggtctccagaacttcctactcacaagcattctta
tgttgattgtacactattcagattttaaactgtgtattttaacgtactca
aatatgctgttgatatctgctttttttgaagggagtgttaaatttaaaca
gctacttacttaacctagtggattatatttagtgtgtgtgagcgtgtgtt
tgtg

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgaggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggaaggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcacccta
tagtggaacacattatgagctaaccagtaccccggagctcttgactctag
ctgcatatatatcaaagatggcctagtctgccatcactggaaagagaggc
ccattggacttgcaaccttatattgctcagttacaggaaataacaggcta
aagatgctgcgatggaatgtgggggttgtcgatattgtatacatctggat
tagacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116706707_116707794
seq2: B6Ng01-333O09.b_48_1001

seq1  GAATTCATCTCAAAAGAAGAGAACACAAGATTTAAGGGGTGGAGAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAAAGAAGAGAACACAAGATTTAAGGGGTGGAGAGATGG  50

seq1  CTCAGAGGTTAGGAGTACTGGGTGGTCCTGCAGGGAACCCAGGCTCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTTAGGAGTACTGGGTGGTCCTGCAGGGAACCCAGGCTCAATT  100

seq1  TCTATCACCCACATATCAGCCACAATCAACTGTAATTCCAATTCTAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACCCACATATCAGCCACAATCAACTGTAATTCCAATTCTAGGAG  150

seq1  ATCTAACATCCTTTTCTGACTTCCACAGTCACTGCATGCACAGATAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATCCTTTTCTGACTTCCACAGTCACTGCATGCACAGATAATGA  200

seq1  TGCAAATTTTGAAAACAGTTAAAGAAAAAAAATGAAATAACATAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTTTGAAAACAGTTAAAGAAAAAAAATGAAATAACATAAAACAA  250

seq1  CCCCTCTTAAATATTACTAAAGCCCACTTACTATCTGAAATTAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTAAATATTACTAAAGCCCACTTACTATCTGAAATTAAAACAAA  300

seq1  TACCCAATTGGGTTGGATGTTTTATGGTGTCTGTTTTACATATGAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATTGGGTTGGATGTTTTATGGTGTCTGTTTTACATATGAGTTTT  350

seq1  ATGAACTTTGTGTGTGTGCAGGCATGCATGTGTGTGTGCATGTATGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTGTGTGTGTGCAGGCATGCATGTGTGTGTGCATGTATGTGTG  400

seq1  TGTATGTGCACACACATGTGTATGCATGTATGTGTATGTGTGTGTGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCACACACATGTGTATGCATGTATGTGTATGTGTGTGTGCGTG  450

seq1  TGTATAGATGTGTGACATGATGCTTTGAATGGCAGTCAAAACCAACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGATGTGTGACATGATGCTTTGAATGGCAGTCAAAACCAACTCAG  500

seq1  AAGTTGGTCGTGACGTCCCTTATTGGTCGCAACGTCCCTTGTGCGGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTCGTGACGTCCCTTATTGGTCGCAACGTCCCTTGTGCGGGTTC  550

seq1  TAGTGATTGAGCGCAGGTTGTCAGGCTTGGCAATAAGCATCTTTACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTGAGCGCAGGTTGTCAGGCTTGGCAATAAGCATCTTTACCCAC  600

seq1  TGAGCCATCGTGCCAGCCCCCATCGGAGGTTTTCTCCCACAATGCAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCGTGCCAGCCCCCATCGGAGGTTTTCTCCCACAATGCAATGT  650

seq1  AGCATCTGAGCATAGCAATATGGTTGTATTTTTGCCAACCGTGTAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAGCATAGCAATATGGTTGTATTTTTGCCAACCGTGTAGCCTT  700

seq1  ATACTTCCTGGCTAGAGTTATGTTTCTGGACTTCGAATGAAGTATGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCTGGCTAGAGTTATGTTTCTGGACTTCGAATGAAGTATGAAGG  750

seq1  GAACATCGATGCTGTTGGTCTCCAGAACTTCCTACTCACAAGCATTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCGATGCTGTTGGTCTCCAGAACTTCCTACTCACAAGCATTCTTA  800

seq1  TGTTGATTGTACACTATTCAGATTTTAAACTGTGTATTTTAACGTACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTGTACACTATTCAGATTTTAAACTGTGTATTTTAACGTACTCA  850

seq1  AATATGCTGTTGATATCTGCTTTTTTTTGAAGGGAGTGTTAAATTTAAAC  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATATGCTGTTGATATCTGC-TTTTTTTGAAGGGAGTGTTAAATTTAAAC  899

seq1  AGCTACTTACTTAACCTAGTTGGATTATATTTAGTGTGTGTGAGCGTGTG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCTACTTACTTAACCTAG-TGGATTATATTTAGTGTGTGTGAGCGTGTG  948

seq1  TGTGTGTGTATGAGTGTGTGTGTGTATGAGTGTGTGTGTGAGCGTGTGTG  1000
      | ||||                                            
seq2  TTTGTG--------------------------------------------  954

seq1  TGTGGGTGAGCATGTGTGTGTGAGCGTGTGTGTGGGTGAGCATGTGTGTG  1050
                                                        
seq2  --------------------------------------------------  954

seq1  TGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTTTGTG  1088
                                            
seq2  --------------------------------------  954


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