BAC Information

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BAC

Clone NameB6Ng01-334E09
Chromosome9 (Build37)
Map Location 87,508,691 - 87,509,778
singlet/doubletsinglet
Overlap genenone
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334E09.bB6Ng01-334E09.g
ACCGA119817GA119818
length1,0731,204
definitionB6Ng01-334E09.b B6Ng01-334E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagctgacagagactaatgaagaggtgagaaatattcagggtgag
tgttcatgtcttgacagaggaggaggaaacttaaggaaaacaaattacat
cagttaaggctaacaggatagagataagagaagcaaaagagccaaggaga
taaagtaaagcccacggggttaaagagtattaggagggcaaatctatcag
gacgggaagggatgatgagaaggaaatcggagtttctaacaaaggagggg
catacaagtaaaaactccaaatttattatgtgaaaaactccttcctttaa
gtcaggcttcctaggaaataaatctaaaaacaaaagagagagaggaagaa
aaaaagagggaagataggaaaatgaatttgcaagaactgaaaggcttagg
aaaaccactactgacaagagagagaaaaagagttttccctgtagatgagt
agacactaatcccatccatctccttcccgctagcaacaaggactagaaga
tgatacgcaccaacagagaaacccgtatcctcaggtttctatcaatttct
agattaattttctctttgggaaggcacagatttaatttcagaccaaatgc
aagcctctaaagctattttggcccagtcctttgggttttagctaagtaaa
ctgcagcttccactgtagaaataaagttgtggtgtcaacaaaaatagaag
atgctggaactgagagaaagacctcaaagctctgcactgtcattcagagc
tttatgaatactatccgttttgtggcatagctatcttgctttttcaccca
tgaagaaacagagaaggaaaataaatacacgttcaagtttacagttttta
aaaaatcttactatataaaaatgcaaggaaaacagcaggcataatctatt
accctgctctgtttcagattccaagcactaagtataaacatgaccaccct
tgactttttagaacaccaactaacacttccggggaaaactagatcgagag
tgtgacttctgccctgactgtccaagaaggtgcttgcctctctcttaaga
ggaaaacagtctgtctacccgcc
gaattctttgtttagctctgtctcccatgttttaatagggttatttggtt
ttctggagtctaacttcttgagttctttatatatattggatattatcact
ctatcggatttaggactggtaaagatcttttcccaatctgttggttgcct
ttttgtcttattgacagtgtcctttactttacagaaactttgcaatttta
tgaggtcccatttgtcaattcttggtattacagcacaagccattggtgtt
ctgttcaggtttttttccccagtgccaatatcttcaaggctctcccccac
tttctcctctataagttttagtgtctctggttttatgtggaagttcttga
tccacttggacttgagttctgtacaaggagataagaatggagcaatttgc
attcttttacatggtaaccaacagttgagccagcaccatttgttaaaaat
gttgtctttttcccactggattgttttagctcctttgtcaaagatcagcc
ataggtctgtgggtttatttctgggtcttctattttattccattgatcta
cctgtttgtcactgtacccaataccatgcagtttttatcacaattgctct
gtagtataccttgcattcagggatggtgatttcatcagttcttttactgt
tgagaatagtttttgctctcctaggttttttgttattccagatgaatttg
caaattgctctatccatctgtgaagaattaagttggaattttgatgggta
ttgcattgaatctgtagattgctttcagcaagatggccatttttactata
ttaatcctgtcaatccatgagcatgggagatctttccatcatctgagatc
ttagaattattttttcagagacttgaaatttttaatcatacagatctttc
acttccttagttagagtcacaccaaggtattttatattatttgtgactat
atgaggatctgttttctaatttctttctcagcctgtttattctttgtgta
gagaagggctactgatttgtttgagtatttaacatcatctacttgcctaa
cagtgttatcagcatcagagtgttactctgtgcaaattttggggtcacca
aattgtatgtatcaatcatatgtaatagtggcatattcactttcctttca
tggattccttaatctccttggtggtcctaatgtgctctgggtctggagag
acat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_87508691_87509778
seq2: B6Ng01-334E09.b_50_1122

seq1  GAATTCAGCTGACAGAGACTAATGAAGAGGTGAGAAATATTCAGGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGACAGAGACTAATGAAGAGGTGAGAAATATTCAGGGTGAG  50

seq1  TGTTCATGTCTTGACAGAGGAGGAGGAAACTTAAGGAAAACAAATTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTCTTGACAGAGGAGGAGGAAACTTAAGGAAAACAAATTACAT  100

seq1  CAGTTAAGGCTAACAGGATAGAGATAAGAGAAGCAAAAGAGCCAAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGGCTAACAGGATAGAGATAAGAGAAGCAAAAGAGCCAAGGAGA  150

seq1  TAAAGTAAAGCCCACGGGGTTAAAGAGTATTAGGAGGGCAAATCTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAGCCCACGGGGTTAAAGAGTATTAGGAGGGCAAATCTATCAG  200

seq1  GACGGGAAGGGATGATGAGAAGGAAATCGGAGTTTCTAACAAAGGAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGAAGGGATGATGAGAAGGAAATCGGAGTTTCTAACAAAGGAGGGG  250

seq1  CATACAAGTAAAAACTCCAAATTTATTATGTGAAAAACTCCTTCCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGTAAAAACTCCAAATTTATTATGTGAAAAACTCCTTCCTTTAA  300

seq1  GTCAGGCTTCCTAGGAAATAAATCTAAAAACAAAAGAGAGAGAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTTCCTAGGAAATAAATCTAAAAACAAAAGAGAGAGAGGAAGAA  350

seq1  AAAAAGAGGGAAGATAGGAAAATGAATTTGCAAGAACTGAAAGGCTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGGAAGATAGGAAAATGAATTTGCAAGAACTGAAAGGCTTAGG  400

seq1  AAAACCACTACTGACAAGAGAGAGAAAAAGAGTTTTCCCTGTAGATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTACTGACAAGAGAGAGAAAAAGAGTTTTCCCTGTAGATGAGT  450

seq1  AGACACTAATCCCATCCATCTCCTTCCCGCTAGCAACAAGGACTAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAATCCCATCCATCTCCTTCCCGCTAGCAACAAGGACTAGAAGA  500

seq1  TGATACGCACCAACAGAGAAACCCGTATCCTCAGGTTTCTATCAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACGCACCAACAGAGAAACCCGTATCCTCAGGTTTCTATCAATTTCT  550

seq1  AGATTAATTTTCTCTTTGGGAAGGCACAGATTTAATTTCAGACCAAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATTTTCTCTTTGGGAAGGCACAGATTTAATTTCAGACCAAATGC  600

seq1  AAGCCTCTAAAGCTATTTTGGCCCAGTCCTTTGGGTTTTAGCTAAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTAAAGCTATTTTGGCCCAGTCCTTTGGGTTTTAGCTAAGTAAA  650

seq1  CTGCAGCTTCCACTGTAGAAATAAAGTTGTGGTGTCAACAAAAATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTCCACTGTAGAAATAAAGTTGTGGTGTCAACAAAAATAGAAG  700

seq1  ATGCTGGAACTGAGAGAAAGACCTCAAAGCTCTGCACTGTCATTCAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAACTGAGAGAAAGACCTCAAAGCTCTGCACTGTCATTCAGAGC  750

seq1  TTTATGAATACTATCCGTTTTGTGGCATAGCTATCTTGCTTTTTCACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATACTATCCGTTTTGTGGCATAGCTATCTTGCTTTTTCACCCA  800

seq1  TGAAGAAACAGAGAAGGAAAATAAATACACGTTCAAGTTTACAGTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGAAACAGAGAAGGAAAATAAATACACGTTCAAGTTTACAGTTTTT-  849

seq1  AAAAAATCTTACTATATAAAAATGCAAGGAAAACAGCAGGCATAATCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTACTATATAAAAATGCAAGGAAAACAGCAGGCATAATCTAT  899

seq1  TACCCTGCTCTGTTTCAGATTCCAAGCACTAAGTATAAACATGACCACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCTCTGTTTCAGATTCCAAGCACTAAGTATAAACATGACCACCC  949

seq1  TTGACTTTTTTAGAAACACCAACTAACACCTTCCGGGGAAAACTAGAGTC  1000
      ||||| ||||||| |||||||||||||| |||||||||||||||||| ||
seq2  TTGAC-TTTTTAG-AACACCAACTAACA-CTTCCGGGGAAAACTAGA-TC  995

seq1  AGAAGAGTGTGACGTTCTGGCCCAGAACTGTCCAAGGAGGGTGC-TGCCT  1049
         |||||||||| |||| |||| | ||||||||| || ||||| |||| 
seq2  --GAGAGTGTGAC-TTCT-GCCCTG-ACTGTCCAA-GAAGGTGCTTGCC-  1038

seq1  CTTCTCTATAAAGAAGGAAAAACAGTACTG-CTACCCGCC  1088
        ||||| | ||||  | |||||||| ||| |||||||||
seq2  --TCTCTCTTAAGA--GGAAAACAGT-CTGTCTACCCGCC  1073