BAC Information

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BAC

Clone NameB6Ng01-334K02
Chromosome9 (Build37)
Map Location 17,469,213 - 17,578,712
singlet/doubletdoublet
Overlap geneLOC244710
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334K02.bB6Ng01-334K02.g
ACCGA120089GA120090
length1,1441,088
definitionB6Ng01-334K02.b B6Ng01-334K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,577,569 - 17,578,712)(17,469,213 - 17,470,310)
sequence
gaattcatttggcgagaaagaccctactcattagtaatttctcctgattg
gtgcttttatgacttgtccatcataagattcaccactgtagtcacaatca
aaacactgtgtattctcacttgtcacagcagctagataaaactaaaaaga
aattccttttggcataaattatgacatttggaatttatcaatagtccatt
ctttgtggatgtttatactcggcaatggcccaggcttggcttttgatggg
agaaaaagggataaaacatccgggctgcttgttaaaggtcttcgcttgct
ttcttttcactctttctctatattatgtatttatgaatgtgtgtccacaa
aaagggctacaagcctcaaaggatcaaacccaaaaattagtgtttcaata
aaattaattggtcattatatgaaatatttggattcacgataattgtggta
aattcaagccacttaaaaagtcacagattttgttttagtttgtgatcaaa
actttgatgagcataaattatacaagctagtttaaatttgaagcaattct
ttcatgatggacaagctaccacagccagtgctcctaaacagaggaattct
gggtaaaacttggatggaaattaaagtctagatcttgtttaagagatatc
cctttgatattatattaaaattttacttagattttacttctctttaaagc
tgaacattaattgtaatctctttgaaaacatctcaaaatattttttctgt
gaaatgctgctttaaaatgaattagttgtaaaaatggtgtctgaatattt
tactacaattctacagttatgctcagtcataaaaagatctgttattttaa
tgagaatgagagagtcgtctctgcatatacttttgggtataacaaaatct
atagaaaaaagagattaatagaataatatagaataagttttatggttctt
ctacatcttaattctgtcagatacaggttcaatatcttatcatatcaaat
atttttattaaagtggcatgcttttcagaaaagcagatgctattaaattt
actcacatttacagtacctaattaaaactctaattcattaacatttgaat
ttaggccaaattcttgagttaacctttgttgagaataatgattt

gaattcttatgctttacaaaactattccatttgtagtgaatgttaatgtg
aatgttaatcatcttgtcatcttgactggatttaggatcagctaaatgaa
gatatatctatgaaaatctttgagtgcatttctattaagatttaactgag
acagtaaaacctatcctaaatgctgatggcagtatcccattgactggaat
cctaaactgactaaaaatagatagtaaagaaagtcaggtagtacctaccc
ctctcccccctcatcccttctctcttcctgtctctctccttgatgttgaa
tgtagtacctcacaccctgatgacttttccaccatgataaactgtgatca
gaaaacttcttcctgaattatttcacttaattgagtagtttttaacaatt
atatatttgtggatatcaatcaattaaactcctcccctagagaatatttt
gcattctccaaggtatatgacatacacttatgtataatgtcatctaatcc
tacaacatcctcagcctagcatcagtctttattagcctgctcactatagc
atccttgacatctaacaagtatcaacagtactgcagaccatgatttttac
tgtccattctttcaagaaaatgaggcaagagatcctataagactgctggg
atgttttcctcttgcccacaatcatcactcacctaacactctgtttctct
tgtcttgtgaaactgtttcttgatccatggttaactttcattaagcatgg
ctcctcacttctcttcaacaccatctctgttatttttattccatcatgac
cactggcacttttccagacctaacatacacacttattgtttgaagacaac
agaactctgagtgtgaacctgcttgtgtacttcttatattttatttgtag
cattcctatatcttttgcctcatgtttattatcttcctgaacttctctca
gtgtttatcccatgaatgctggaaacagggcaggtactgcatccctctat
tacttctgctgtaacatcttctcaaagatgtatagtgctttaacagcatg
aaagtttattgtagccctattgctgtttaattgtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17577569_17578712
seq2: B6Ng01-334K02.b_49_1192 (reverse)

seq1  AAATCATTTATCTTCCACAAA-GTTTACTCAAGAAATTTGGCCTAAATTC  49
      |||||| ||||  || ||||| ||| ||||||| ||||||||||||||||
seq2  AAATCA-TTATTCTCAACAAAGGTTAACTCAAG-AATTTGGCCTAAATTC  48

seq1  -AATGTTAATGATTTAGAGTTTTTAAATAGGTACTGT-AATGTGAGT-AA  96
       ||||||||||| |||||| |||||| |||||||||| ||||||||| ||
seq2  AAATGTTAATGAATTAGAG-TTTTAATTAGGTACTGTAAATGTGAGTAAA  97

seq1  TTTTATAGCATCTGCTTTTCTTGAAAAGCATGCCACTTTAAT-AAAATAT  145
      ||| |||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TTTAATAGCATCTGCTTTTC-TGAAAAGCATGCCACTTTAATAAAAATAT  146

seq1  TTGATATGAATAGATATTGAACCTGTATCTGACAGAATTAAGATGTAGAA  195
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGATAAGATATTGAACCTGTATCTGACAGAATTAAGATGTAGAA  196

seq1  GAACCATAAAACTTATTCTATATTATTTCTATTAATCTCTTTTTTCTATA  245
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAACCATAAAACTTATTCTATATTA-TTCTATTAATCTCTTTTTTCTATA  245

seq1  GATTTTGTTATACCCAAAAGTATATGCAGAGACGACTCTCTCATTCTCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTATACCCAAAAGTATATGCAGAGACGACTCTCTCATTCTCAT  295

seq1  TAAAATAACAGATCTTTTTATGACTGAGCATAACTGTAGAATTGTAGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAGATCTTTTTATGACTGAGCATAACTGTAGAATTGTAGTAA  345

seq1  AATATTCAGACACCATTTTTACAACTAATTCATTTTAAAGCAGCATTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAGACACCATTTTTACAACTAATTCATTTTAAAGCAGCATTTCA  395

seq1  CAGAAAAAATATTTTGAGATGTTTTCAAAGAGATTACAATTAATGTTCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAATATTTTGAGATGTTTTCAAAGAGATTACAATTAATGTTCAG  445

seq1  CTTTAAAGAGAAGTAAAATCTAAGTAAAATTTTAATATAATATCAAAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAGAAGTAAAATCTAAGTAAAATTTTAATATAATATCAAAGGG  495

seq1  ATATCTCTTAAACAAGATCTAGACTTTAATTTCCATCCAAGTTTTACCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTAAACAAGATCTAGACTTTAATTTCCATCCAAGTTTTACCCA  545

seq1  GAATTCCTCTGTTTAGGAGCACTGGCTGTGGTAGCTTGTCCATCATGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTTTAGGAGCACTGGCTGTGGTAGCTTGTCCATCATGAAA  595

seq1  GAATTGCTTCAAATTTAAACTAGCTTGTATAATTTATGCTCATCAAAGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTTCAAATTTAAACTAGCTTGTATAATTTATGCTCATCAAAGTT  645

seq1  TTGATCACAAACTAAAACAAAATCTGTGACTTTTTAAGTGGCTTGAATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACAAACTAAAACAAAATCTGTGACTTTTTAAGTGGCTTGAATTT  695

seq1  ACCACAATTATCGTGAATCCAAATATTTCATATAATGACCAATTAATTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATTATCGTGAATCCAAATATTTCATATAATGACCAATTAATTTT  745

seq1  ATTGAAACACTAATTTTTGGGTTTGATCCTTTGAGGCTTGTAGCCCTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACACTAATTTTTGGGTTTGATCCTTTGAGGCTTGTAGCCCTTTT  795

seq1  TGTGGACACACATTCATAAATACATAATATAGAGAAAGAGTGAAAAGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACACACATTCATAAATACATAATATAGAGAAAGAGTGAAAAGAAA  845

seq1  GCAAGCGAAGACCTTTAACAAGCAGCCCGGATGTTTTATCCCTTTTTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGAAGACCTTTAACAAGCAGCCCGGATGTTTTATCCCTTTTTCTC  895

seq1  CCATCAAAAGCCAAGCCTGGGCCATTGCCGAGTATAAACATCCACAAAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAAGCCAAGCCTGGGCCATTGCCGAGTATAAACATCCACAAAGA  945

seq1  ATGGACTATTGATAAATTCCAAATGTCATAATTTATGCCAAAAGGAATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTATTGATAAATTCCAAATGTCATAATTTATGCCAAAAGGAATTT  995

seq1  CTTTTTAGTTTTATCTAGCTGCTGTGACAAGTGAGAATACACAGTGTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTTTTATCTAGCTGCTGTGACAAGTGAGAATACACAGTGTTTT  1045

seq1  GATTGTGACTACAGTGGTGAATCTTATGATGGACAAGTCATAAAAGCACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGACTACAGTGGTGAATCTTATGATGGACAAGTCATAAAAGCACC  1095

seq1  AATCAGGAGAAATTACTAATGAGTAGGGTCTTTCTCGCCAAATGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAGAAATTACTAATGAGTAGGGTCTTTCTCGCCAAATGAATTC  1144


seq1: chr9_17469213_17470310
seq2: B6Ng01-334K02.g_68_1155

seq1  GAATTCTTATGCTTTACAAAACTATTCCATTTGTAGTGAATGTTAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCTTTACAAAACTATTCCATTTGTAGTGAATGTTAATGTG  50

seq1  AATGTTAATCATCTTGTCATCTTGACTGGATTTAGGATCAGCTAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATCATCTTGTCATCTTGACTGGATTTAGGATCAGCTAAATGAA  100

seq1  GATATATCTATGAAAATCTTTGAGTGCATTTCTATTAAGATTTAACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCTATGAAAATCTTTGAGTGCATTTCTATTAAGATTTAACTGAG  150

seq1  ACAGTAAAACCTATCCTAAATGCTGATGGCAGTATCCCATTGACTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAACCTATCCTAAATGCTGATGGCAGTATCCCATTGACTGGAAT  200

seq1  CCTAAACTGACTAAAAATAGATAGTAAAGAAAGTCAGGTAGTACCTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTGACTAAAAATAGATAGTAAAGAAAGTCAGGTAGTACCTACCC  250

seq1  CTCTCCCCCCTCATCCCTTCTCTCTTCCTGTCTCTCTCCTTGATGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCCTCATCCCTTCTCTCTTCCTGTCTCTCTCCTTGATGTTGAA  300

seq1  TGTAGTACCTCACACCCTGATGACTTTTCCACCATGATAAACTGTGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACCTCACACCCTGATGACTTTTCCACCATGATAAACTGTGATCA  350

seq1  GAAAACTTCTTCCTGAATTATTTCACTTAATTGAGTAGTTTTTAACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCTTCCTGAATTATTTCACTTAATTGAGTAGTTTTTAACAATT  400

seq1  ATATATTTGTGGATATCAATCAATTAAACTCCTCCCCTAGAGAATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGTGGATATCAATCAATTAAACTCCTCCCCTAGAGAATATTTT  450

seq1  GCATTCTCCAAGGTATATGACATACACTTATGTATAATGTCATCTAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCCAAGGTATATGACATACACTTATGTATAATGTCATCTAATCC  500

seq1  TACAACATCCTCAGCCTAGCATCAGTCTTTATTAGCCTGCTCACTATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATCCTCAGCCTAGCATCAGTCTTTATTAGCCTGCTCACTATAGC  550

seq1  ATCCTTGACATCTAACAAGTATCAACAGTACTGCAGACCATGATTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGACATCTAACAAGTATCAACAGTACTGCAGACCATGATTTTTAC  600

seq1  TGTCCATTCTTTCAAGAAAATGAGGCAAGAGATCCTATAAGACTGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTCTTTCAAGAAAATGAGGCAAGAGATCCTATAAGACTGCTGGG  650

seq1  ATGTTTTCCTCTTGCCCACAATCATCACTCACCTAACACTCTGTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCCTCTTGCCCACAATCATCACTCACCTAACACTCTGTTTCTCT  700

seq1  TGTCTTGTGAAACTGTTTCTTGATCCATGGTTAACTTTCATTAAGCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTGAAACTGTTTCTTGATCCATGGTTAACTTTCATTAAGCATGG  750

seq1  CTCCTCACTTCTCTTCAACACCATCTCTGTTATTTTTATTCCATCATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTTCTCTTCAACACCATCTCTGTTATTTTTATTCCATCATGAC  800

seq1  CACTGGCACTTTTCCAGACCTAACATACACACTTATTGTTTGAAGACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACTTTTCCAGACCTAACATACACACTTATTGTTTGAAGACAAC  850

seq1  AGAACTCTGAGTGTGAACCTGCTTGTGTACTTCTTATATTTTATTTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGAGTGTGAACCTGCTTGTGTACTTCTTATATTTTATTTGTAG  900

seq1  CATTCCTATATCTTTTGCCTCATGTTTATTATCTTCCTGAACTTCTCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATATCTTTTGCCTCATGTTTATTATCTTCCTGAACTTCTCTCA  950

seq1  GTGTTTATCCCATGAATGCTGGAAACAGGGCAGGTACTGCATCCCTCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATCCCATGAATGCTGGAAACAGGGCAGGTACTGCATCCCTCTAT  1000

seq1  TACTTCTGCTGTAACATCTTCTCAAAGATGTATAGTGGTTTAAACAGCAT  1050
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TACTTCTGCTGTAACATCTTCTCAAAGATGTATAGTGCTTT-AACAGCAT  1049

seq1  GAAAGTTTTAATTTTGTAGTCCTTATTTGCTGTTTTTAATTTGTTTGT  1098
      |||||||    | |||||| |||   |||||||||   | ||||||||
seq2  GAAAGTT----TATTGTAGCCCT--ATTGCTGTTT---AATTGTTTGT  1088


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