BAC Information

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BAC

Clone NameB6Ng01-334K18
Chromosome9 (Build37)
Map Location 13,048,061 - 13,084,217
singlet/doubletdoublet
Overlap geneLOC100039729
Upstream geneLOC622505, LOC100039680, LOC665285
Downstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334K18.bB6Ng01-334K18.g
ACCGA120119GA120120
length1,1761,019
definitionB6Ng01-334K18.b B6Ng01-334K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,048,061 - 13,049,251)(13,083,691 - 13,084,217)
sequence
aggcagtctagaacatgtgaaacataaaattataaagcaaggacttgcca
cggccttcatgacactttccttcgtaccctttggcctttcttgtgataac
gttcagttcagttttctcaatctcctctcattacttactcattggtcaga
ctgaacacttcctgaagtttgtttcagtacctaaactaatcatggttaca
ccagaagcagaggaagccaattctccaggacttcagcatgtgataaagga
tcatgaagagcttgttttgtgaacagcaggatttaggggtaggaggtaaa
taccaagaaatgcaaactcggtttagtataggatagattattttaaaatg
aataaccaaaacagaagaatatccaatggcagtaagtcccacgaacaatg
tcaggggctttgtagccccttaataggtggtatcttaaggttgttgatct
tttttgaaggtcacatttgagaaatgatataaaagtataatacttactga
aactgtgcaattcaaactttatttttttatagagataagcttttatattt
tttatttttttattacgtattttcctcaattacatttccaatgctatccc
aaaagtccccccccccgactcccctacccacccattcccatttttttggc
cctggcattcccctgtactggggcatataaagtttgcctgtccaatgggc
ctctctttccagtgatggccgactaggccatcttttgatacataagcagc
tagagtcaagagctccggggtactggttagttcataatgttgttccacct
acagggttgcagatctctttagctcctttggatactttctctagctcctc
cattgggggccctgtgatccatccaatagttgactgggagcatccacttc
tgtgtttgctaggccctggcctagtctcacaagagacatctatatagtac
ttcagtactcatcttgttactttcttgtatctcatcacctatatcacata
taacaatatatgtcttaaatatattatcagcataagtaaatctttttagt
gtctcagcatccattatatttaaaaggtatcactgctgtctgtagtaatt
ttagagtggagaccgcactatgatcattggtgacctgaattggccaggca
gactaaccttcagccatttctcaata

gaattcaacaggctgcattttaaagacctgagggagcttaacactgcggt
atgaatgtatgggcccaatgctccttacactctttctgttttctacctga
ttacagaaggcggcgggcaaatgcttcctggtgaatggattcgggtaatt
caatccgttttgacccgcgggcaattcctgttgtggaaagctgacttcct
tgatctttttcagtcaattgcagtaactaacctgaggtcccttcaggcac
tgtgtgccacctggacttttgaaaaacttagtggtcaaggtaaatacgca
gcagaggctcagcagcgacacctccctgtcggtctcctggctcaaactgc
caactcagcgcttagtgcttggcgagcaattccagcaaaaggtttggtta
tcatgcccctaactaaagttattcaaggggcccaagaagactatagttgt
tgcatccaactcgaccagcaaggaaaaacacaaccaccggttcttcttag
agcagtttactcaggcagcttctctctccaaatcccccatgtacctcggg
gtacaagcatttttatccactcaagccacaaccacgcctcaaccaatcac
cacaggtcacatcacctcaccaggcaggcttgctcagccaatcagggatt
aagggtgagccatccaccaaatatgggcttgtttactgcctggcacatat
ttctgtctggctggccagggagtccagaatggcttcccacatatagtgaa
tttgtgagtcgcctacttgaggctgcagagaggactctagatcatgagga
tgcagacaataagcttattaaacaattggcttatgagaatgctaatttgt
cctgtaaaggctgtcttgcacagtaaaattagggacaaagaccttaatga
aatgacttgcctctgccgtgatgtggatacctttaccataagatgtctca
aacagtccaccttgcgatgggtgcagcacttcagcctgtcatggctattc
agcagactggccacagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_13048061_13049251
seq2: B6Ng01-334K18.b_56_1231

seq1  AGGCAGTCTAGAACATGTGAAACATAAAATTATAAAGCAAGGACTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTAGAACATGTGAAACATAAAATTATAAAGCAAGGACTTGCCA  50

seq1  CGGCCTTCATGACACTTTCCTTCGTACCCTTTGGCCTTTCTTGTGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTCATGACACTTTCCTTCGTACCCTTTGGCCTTTCTTGTGATAAC  100

seq1  GTTCAGTTCAGTTTTCTCAATCTCCTCTCATTACTTACTCATTGGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCAGTTTTCTCAATCTCCTCTCATTACTTACTCATTGGTCAGA  150

seq1  CTGAACACTTCCTGAAGTTTGTTTCAGTACCTAAACTAATCATGGTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTTCCTGAAGTTTGTTTCAGTACCTAAACTAATCATGGTTACA  200

seq1  CCAGAAGCAGAGGAAGCCAATTCTCCAGGACTTCAGCATGTGATAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAGAGGAAGCCAATTCTCCAGGACTTCAGCATGTGATAAAGGA  250

seq1  TCATGAAGAGCTTGTTTTGTGAACAGCAGGATTTAGGGGTAGGAGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAGCTTGTTTTGTGAACAGCAGGATTTAGGGGTAGGAGGTAAA  300

seq1  TACCAAGAAATGCAAACTCGGTTTAGTATAGGATAGATTATTTTAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGAAATGCAAACTCGGTTTAGTATAGGATAGATTATTTTAAAATG  350

seq1  AATAACCAAAACAGAAGAATATCCAATGGCAGTAAGTCCCACGAACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAAAACAGAAGAATATCCAATGGCAGTAAGTCCCACGAACAATG  400

seq1  TCAGGGGCTTTGTAGCCCCTTAATAGGTGGTATCTTAAGGTTGTTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGCTTTGTAGCCCCTTAATAGGTGGTATCTTAAGGTTGTTGATCT  450

seq1  TTTTTGAAGGTCACATTTGAGAAATGATATAAAAGTATAATACTTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGGTCACATTTGAGAAATGATATAAAAGTATAATACTTACTGA  500

seq1  AACTGTGCAATTCAAACTTTATTTTTTTATAGAGATAAGCTTTTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCAATTCAAACTTTATTTTTTTATAGAGATAAGCTTTTATATTT  550

seq1  TTTATTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCC  600

seq1  AAAAGTCCCCCCCCCCGACTCCCCTACCCACCCATTCCCATTTTTTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCCCCCCCCGACTCCCCTACCCACCCATTCCCATTTTTTTGGC  650

seq1  CCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCCAATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCCAATGGGC  700

seq1  CTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATAAGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATAAGCAGC  750

seq1  TAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCT  800

seq1  ACAGGGTTGCAGATCTCTTTAGCTCC-TTGGATACTTTCTCTAGCTCCTC  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGGGTTGCAGATCTCTTTAGCTCCTTTGGATACTTTCTCTAGCTCCTC  850

seq1  CATTGGGGGCCCTGTGATCCATCCAATAGTTGACTGGGAGCATCCACTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGGCCCTGTGATCCATCCAATAGTTGACTGGGAGCATCCACTTC  900

seq1  TGTGTTTGCTAGGCCCTGGCCTAGTCTCACAAGAGACATCTATATAGTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCTAGGCCCTGGCCTAGTCTCACAAGAGACATCTATATAGTAC  950

seq1  TTCAGTACTCATCTTGTTACTTTCTTGTATCTCCATCACCTATATCACAT  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCAGTACTCATCTTGTTACTTTCTTGTATCT-CATCACCTATATCACAT  999

seq1  ATAAACAAATATATGTCTTAAAATAATTATTATCAGCATAAGTAAATCTT  1049
      ||||   |||||||||||| |||||  |||||||||||||||||||||||
seq2  ATAA--CAATATATGTCTT-AAATA--TATTATCAGCATAAGTAAATCTT  1044

seq1  TTTAGTGTTCTCAGCATCCCATTATATTTAAAAGGTTATCACTGCTGTCT  1099
      ||||||| ||||||||| ||||||||||||||||| ||||||||||||||
seq2  TTTAGTG-TCTCAGCAT-CCATTATATTTAAAAGG-TATCACTGCTGTCT  1091

seq1  GTAAATTATTTTAGGAAGTGGGAGACAGGCACTATGATCATTGTTGTACC  1149
      || | | |||||||  ||| ||||||  ||||||||||||||| || |||
seq2  GT-AGTAATTTTAG--AGT-GGAGAC-CGCACTATGATCATTGGTG-ACC  1135

seq1  TGAAATAGCACAGGCAGACCTACACTCAGGCATTTCTCAATA  1191
      |||| | || |||||||||  ||  |||| ||||||||||||
seq2  TGAATTGGC-CAGGCAGACTAACCTTCAGCCATTTCTCAATA  1176


seq1: chr9_13083691_13084217
seq2: B6Ng01-334K18.g_67_593 (reverse)

seq1  AGAGAGAAGCTGCCTGAGTAAACTGCTCTAAGAAGAACCGGTGGTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGCTGCCTGAGTAAACTGCTCTAAGAAGAACCGGTGGTTGTGT  50

seq1  TTTTCCTTGCTGGTCGAGTTGGATGCAACAACTATAGTCTTCTTGGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCTGGTCGAGTTGGATGCAACAACTATAGTCTTCTTGGGCCC  100

seq1  CTTGAATAACTTTAGTTAGGGGCATGATAACCAAACCTTTTGCTGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAACTTTAGTTAGGGGCATGATAACCAAACCTTTTGCTGGAATT  150

seq1  GCTCGCCAAGCACTAAGCGCTGAGTTGGCAGTTTGAGCCAGGAGACCGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCCAAGCACTAAGCGCTGAGTTGGCAGTTTGAGCCAGGAGACCGAC  200

seq1  AGGGAGGTGTCGCTGCTGAGCCTCTGCTGCGTATTTACCTTGACCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGTCGCTGCTGAGCCTCTGCTGCGTATTTACCTTGACCACTAA  250

seq1  GTTTTTCAAAAGTCCAGGTGGCACACAGTGCCTGAAGGGACCTCAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAAAGTCCAGGTGGCACACAGTGCCTGAAGGGACCTCAGGTTA  300

seq1  GTTACTGCAATTGACTGAAAAAGATCAAGGAAGTCAGCTTTCCACAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCAATTGACTGAAAAAGATCAAGGAAGTCAGCTTTCCACAACAG  350

seq1  GAATTGCCCGCGGGTCAAAACGGATTGAATTACCCGAATCCATTCACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCCGCGGGTCAAAACGGATTGAATTACCCGAATCCATTCACCAG  400

seq1  GAAGCATTTGCCCGCCGCCTTCTGTAATCAGGTAGAAAACAGAAAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTGCCCGCCGCCTTCTGTAATCAGGTAGAAAACAGAAAGAGTG  450

seq1  TAAGGAGCATTGGGCCCATACATTCATACCGCAGTGTTAAGCTCCCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCATTGGGCCCATACATTCATACCGCAGTGTTAAGCTCCCTCAG  500

seq1  GTCTTTAAAATGCAGCCTGTTGAATTC  527
      |||||||||||||||||||||||||||
seq2  GTCTTTAAAATGCAGCCTGTTGAATTC  527


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