BAC Information

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BAC

Clone NameB6Ng01-334L03
Chromosome9 (Build37)
Map Location 9,646,906 - 9,648,083
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L03.bB6Ng01-334L03.g
ACCGA120137GA120138
length1,1791,139
definitionB6Ng01-334L03.b B6Ng01-334L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggcgactagggtgaggatcttatacccacacccacagtgaca
cacccattccaaccaggtcatatctatttcaacaaggccacaccttcaga
tggtgccactccctggtccaaggatatacaaaccatcacaccttctaatg
tcagaagccagacatagatacagagataggattgtgggaaggaaaagagg
gaaggaaattgttgttgggtaagcaattctaatatggcaaagcaaagcaa
aaattctaacaaggaagaagtttcctccagcatgcagtgagaatgtttaa
atggttcaaaatcaaaaactgaatcagtggctgtggaaattagctggtca
tgtttgagacacggaatgtacttgaaaacattgtccacattacttttcac
tcacaggaataattatttttatagtttgttcctagcaggactgttttgtg
aagatgatctggaagcatctgcagtaatcttagtgatgcatcttcacagt
acaaggtcaaaggtctgcactgcacaacgttaaatatttatccacatgtt
aaactcataaagggctcctcatcctggaagaggagacagaagaaaatgag
agtcagagacttgggaggaggggagctgtcaaacgatgtccttgatatgt
aacatggctgtggcatttgtgaactcaaggcagctgatacttacctgaat
aagactttcaaaaatgaaaactaaaaaagggtaaaattgtaggcatacat
tttttgtgacattttaatgaaggttcaacctctctgctagccgaccaccc
agcagtggaagagaaaagttattaagatatgggtcgggtggactcgttca
gcaatagttccttgggggttgagctttgatctggtttgggtagcaatttg
agacccatagaaaacatcaaacatgacgtagtagctccaaggagctctag
ggaggcagatacgacacaaaccagaagctacagccaaatccttcagcaag
cagacagcaggcacaagctggcaactctagttcaacctggatgaaacatc
aggttcacatcagtcttaggtgaggctgcagaacttgaaatcagtcttgg
gttggattctcctcaatggtggcgctatcacaagttgaacctcaacacac
taaattaagggcaacccattacatgtgtg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgaccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atgaggagctagagaaagtacccaagagctaaagggatctcaccctatag
gtggaacaacatatgactaccagtaccctgagctctgactctagctgcat
atgtatcaaagatgctagtcgcatcactgaaggaagccattgaaccgcga
cttggttgcccggtacaggacgcagggccaagggggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9646906_9648083
seq2: B6Ng01-334L03.b_50_1228 (reverse)

seq1  CACACATGTATTGGTTTGCC--TTATATAGTGTTGTTGA-GCTCAACTTG  47
      |||||||||| ||| |||||  | || ||||| |||||| | ||||||||
seq2  CACACATGTAATGGGTTGCCCTTAATTTAGTG-TGTTGAGGTTCAACTTG  49

seq1  TGATAGCGCCACCATTGA-GAGAAACTCACCCAAGAACTGATCTCAAGGT  96
      |||||||||||||||||| ||||| |  ||||||| |||||| |||||  
seq2  TGATAGCGCCACCATTGAGGAGAATCCAACCCAAG-ACTGATTTCAAG--  96

seq1  TCCTGCAGCCTCACCTAAGGCTGGTTGGTGAGCCTGATGGTTTCATCAAG  146
      | ||||||||||||||||| ||| |  |||| |||||| |||||||| ||
seq2  TTCTGCAGCCTCACCTAAGACTGAT--GTGAACCTGAT-GTTTCATCCAG  143

seq1  GTTGAACTAGAGTTGCCAGCTTGTGCCTGCTGTCTGCTTGCTGAAAGGAT  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTGAACTAGAGTTGCCAGCTTGTGCCTGCTGTCTGCTTGCTG-AAGGAT  192

seq1  TTGGCTGTAGCTTCTGGTTTGTGTCGTATCTGCCTCCCTAGAGCTCCTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTAGCTTCTGGTTTGTGTCGTATCTGCCTCCCTAGAGCTCCTTG  242

seq1  GAGCTACTACGTCATGTTTGATGTTTTCTATGGGTCTC-AATTGCTACCC  295
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGCTACTACGTCATGTTTGATGTTTTCTATGGGTCTCAAATTGCTACCC  292

seq1  -AAGCAGATC-AAGCTC-ACCCCCAAGGAACTATTGCTGAACGAGTCCAC  342
       || |||||| |||||| ||||||||||||||||||||||||||||||||
seq2  AAACCAGATCAAAGCTCAACCCCCAAGGAACTATTGCTGAACGAGTCCAC  342

seq1  CCGACCCATATCTTAATAACTTTTCTCTTCCACTGCTGGGTGGTCGGCTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCCATATCTTAATAACTTTTCTCTTCCACTGCTGGGTGGTCGGCTA  392

seq1  GCAGAGAGGTTGAACCTTCATT-AAATGTCACAAAAAATGTATGCCTACA  441
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGAGAGGTTGAACCTTCATTAAAATGTCACAAAAAATGTATGCCTACA  442

seq1  ATTTTACCCTTTTTTAGTTTTCATTTTTGAAAGTCTTATTCAGGTAAGTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCCTTTTTTAGTTTTCATTTTTGAAAGTCTTATTCAGGTAAGTA  492

seq1  TCAGCTGCCTTGAGTTCACAAATGCCACAGCCATGTTACATATCAAGGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCTTGAGTTCACAAATGCCACAGCCATGTTACATATCAAGGAC  542

seq1  ATCGTTTGACAGCTCCCCTCCTCCCAAGTCTCTGACTCTCATTTTCTTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTGACAGCTCCCCTCCTCCCAAGTCTCTGACTCTCATTTTCTTCT  592

seq1  GTCTCCTCTTCCAGGATGAGGAGCCCTTTATGAGTTTAACATGTGGATAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCTTCCAGGATGAGGAGCCCTTTATGAGTTTAACATGTGGATAA  642

seq1  ATATTTAACGTTGTGCAGTGCAGACCTTTGACCTTGTACTGTGAAGATGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAACGTTGTGCAGTGCAGACCTTTGACCTTGTACTGTGAAGATGC  692

seq1  ATCACTAAGATTACTGCAGATGCTTCCAGATCATCTTCACAAAACAGTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAGATTACTGCAGATGCTTCCAGATCATCTTCACAAAACAGTCC  742

seq1  TGCTAGGAACAAACTATAAAAATAATTATTCCTGTGAGTGAAAAGTAATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAACAAACTATAAAAATAATTATTCCTGTGAGTGAAAAGTAATG  792

seq1  TGGACAATGTTTTCAAGTACATTCCGTGTCTCAAACATGACCAGCTAATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATGTTTTCAAGTACATTCCGTGTCTCAAACATGACCAGCTAATT  842

seq1  TCCACAGCCACTGATTCAGTTTTTGATTTTGAACCATTTAAACATTCTCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCCACTGATTCAGTTTTTGATTTTGAACCATTTAAACATTCTCA  892

seq1  CTGCATGCTGGAGGAAACTTCTTCCTTGTTAGAATTTTTGCTTTGCTTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTGGAGGAAACTTCTTCCTTGTTAGAATTTTTGCTTTGCTTTG  942

seq1  CCATATTAGAATTGCTTACCCAACAACAATTTCCTTCCCTCTTTTCCTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTAGAATTGCTTACCCAACAACAATTTCCTTCCCTCTTTTCCTTC  992

seq1  CCACAATCCTATCTCTGTATCTATGTCTGGCTTCTGACATTAGAAGGTGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCCTATCTCTGTATCTATGTCTGGCTTCTGACATTAGAAGGTGT  1042

seq1  GATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGG  1092

seq1  CCTTGTTGAAATAGATATGACCTGGTTGGAATGGGTGTGTCACTGTGGGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGAAATAGATATGACCTGGTTGGAATGGGTGTGTCACTGTGGGT  1142

seq1  GTGGGTATAAGATCCTCACCCTAGTCGCCTAGAATTC  1178
      |||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATAAGATCCTCACCCTAGTCGCCTAGAATTC  1179


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