BAC Information

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BAC

Clone NameB6Ng01-334L24
Chromosome9 (Build37)
Map Location 122,150,225 - 122,347,028
singlet/doubletdoublet
Overlap geneTmem16k, Abhd5
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk
Downstream geneLOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L24.bB6Ng01-334L24.g
ACCGA120178GA120179
length1,165662
definitionB6Ng01-334L24.b B6Ng01-334L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,345,868 - 122,347,028)(122,150,225 - 122,150,886)
sequence
gaattctgggatgtgtatctagctcctgtctctgactcacctcttccttt
cctatcaccacactgctttgacaatgagtggcttgtggtatattttagcg
tcaatcgaggcaagggcagccttccaagttttcactttctcatccttctg
gagtgcaggttcctctctgtgaactgtgaagccattgtgttaggaagcta
atggcagaaggcctggaattgggctgagtggtttcacagaaatatgagat
gaattttcttggcacggccccaatcctgatgagtgattcagcttcagagc
tacagtccacagatgtcccttctgttcgtgtgtcacagaccaaatcaaat
tagatggccctgctgacttcaaaaggacaggaaaatgctaccctgagggg
agggcagtgggaagttgaggaatattaataggggagatgacacacctgtg
ggctgagtctattccagctgccaggagtcttgaacttcttccttcacagt
caggaagctgagagttcaagatcaagggagcaggtgtgttctggtgaagc
cttctttcttcccttcctcttccctcccctcctctctcctctcctctgtc
cctttatttctcttctctccccttctcttccttttccttctttctctccc
ttcccctcccccttccctttctttccccttccctccctctcctctccttc
ctcccctccccctcccattcctcctctcccctcccctcccctttcttttc
ccttccttttttttcccctttctactttttcttttcagacacagaatcaa
aagagcgggagcctcaaagtttgggccctgaaagcccctgcaggcaaact
catcttttcctaggacattgtcttagtttcttttttgatgcttagatgaa
acaccccaacaaagccacttgagtctcgcagttctggattatgtttcatc
acagtgaagtcctgaccagtggagagcttaagttgataacctctgcactc
aagaagcagcttaatctctcagttcctggtgtgactggcactgccagcca
aaagtatgcctctcttcctttagagcaggtcttcccacctgactacctta
attaagacaactctcccacggggtggccagagtctcaaccctcctgatcc
ctccaatgtgcctga
gaattctgagtcatatgactgcattactattcaaagatgacacacgtgga
ttaacggaaagcacactcctccctggaaatgcctctctagtttccatatg
cttttgactaacatcaaaatgaaatggtgtcaaaagacagataccaataa
agcttcctactggtaaccacatgaaaatacagaggctggagctggctcag
tgggtaaagtatccactgtgcaagtgtggggatgtgagttcaaatcccca
cagcactcctaaggacagatgtgggagcacacacgtgtaatccccgaatc
ctatcagcagagacaggtcagctagtgatcggatcagcaaacctgggtgg
ggtatacagcagcaaacaagagtgtctcaaatgaggtggaaggtgaggag
tgtcacttgtgactgtctgacagccacacatgtgctatgccatgcatgtg
cctcacacacatgcatgtgcactctcacaccgattcccctggaggagcac
agtttctctaaaaaccttgactaagatgtgtgcaatacaggagagctgag
gaggaatgcctaggatctgtccttcctctcaggataaaatgaccaactaa
cacctcctgttattctcacttgtgaatttgtacacatgcttgagtgcttc
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122345868_122347028
seq2: B6Ng01-334L24.b_48_1212 (reverse)

seq1  TCAGGCACATTTGTGAGGGATGA-GAGTGTTTAGA-TCTGGGCACACCTG  48
      |||||||||||   ||||||| | ||| ||| ||| ||||| ||| || |
seq2  TCAGGCACATT--GGAGGGATCAGGAGGGTTGAGACTCTGGCCAC-CCCG  47

seq1  TGAGAGA-TTGTCTTAATTAGGTTAGTCAAGGTGGGAAGACCTGCTCTAA  97
      || |||| |||||||||||| | ||||| |||||||||||||||||||||
seq2  TGGGAGAGTTGTCTTAATTAAGGTAGTC-AGGTGGGAAGACCTGCTCTAA  96

seq1  AGG-AGAGAGGCACTACTCTGGGCT-GCAGTGCCAGACAACACAGG-ACT  144
      ||| ||||||||| |||| | |||| |||||||||| ||   |||| |||
seq2  AGGAAGAGAGGCA-TACTTTTGGCTGGCAGTGCCAGTCACACCAGGAACT  145

seq1  G-GAGATT-AGCTGCTTCCTGAGTGCAGAGG-TATCAACTTAAGCTCT-C  190
      | |||||| ||||||||| |||||||||||| |||||||||||||||| |
seq2  GAGAGATTAAGCTGCTTCTTGAGTGCAGAGGTTATCAACTTAAGCTCTCC  195

seq1  ACT-GTCAGGGCTTCACTTGTGATGAAACATAATCCAGAACTGCGAGACT  239
      ||| |||||| |||||| ||||||||||||||||||||||||||||||||
seq2  ACTGGTCAGGACTTCAC-TGTGATGAAACATAATCCAGAACTGCGAGACT  244

seq1  CAAGGTGCTTTTGTTGGGGTGTTTTCATCTAAGCATCAAAAAAGAAACTA  289
      ||| |||  |||||||||||| ||||||||||||||||||||||||||||
seq2  CAA-GTGGCTTTGTTGGGGTG-TTTCATCTAAGCATCAAAAAAGAAACTA  292

seq1  AGACAATGTCCTAGGAAAAGATGAGTTTGCCTGCAGGGGCCTTCAGGGCC  339
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGACAATGTCCTAGGAAAAGATGAGTTTGCCTGCAGGGGCTTTCAGGGCC  342

seq1  CAAACTTTGAGGCTCCCGCTCTTTTGATTCTGTGTCTGAAAAG-AAAAGT  388
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAACTTTGAGGCTCCCGCTCTTTTGATTCTGTGTCTGAAAAGAAAAAGT  392

seq1  AGAAAGGGGAAAAAAAAGGAAGGGAAAAGAAAGGGGAGGGGAGGGGAGAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGAAAAAAAAGGAAGGGAAAAGAAAGGGGAGGGGAGGGGAGAG  442

seq1  GAGGAATGGGAGGGGGAGGGGAGGAAGGAGAGGAGAGGGAGGGAAGGGGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGGGAGGGGGAGGGGAGGAAGGAGAGGAGAGGGAGGGAAGGGGA  492

seq1  AAGAAAGGGAAGGGGGAGGGGAAGGGAGAGAAAGAAGGAAAAGGAAGAGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGAAGGGGGAGGGGAAGGGAGAGAAAGAAGGAAAAGGAAGAGA  542

seq1  AGGGGAGAGAAGAGAAATAAAGGGACAGAGGAGAGGAGAGAGGAGGGGAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGAAGAGAAATAAAGGGACAGAGGAGAGGAGAGAGGAGGGGAG  592

seq1  GGAAGAGGAAGGGAAGAAAGAAGGCTTCACCAGAACACACCTGCTCCCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAGGGAAGAAAGAAGGCTTCACCAGAACACACCTGCTCCCTT  642

seq1  GATCTTGAACTCTCAGCTTCCTGACTGTGAAGGAAGAAGTTCAAGACTCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAACTCTCAGCTTCCTGACTGTGAAGGAAGAAGTTCAAGACTCC  692

seq1  TGGCAGCTGGAATAGACTCAGCCCACAGGTGTGTCATCTCCCCTATTAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGGAATAGACTCAGCCCACAGGTGTGTCATCTCCCCTATTAAT  742

seq1  ATTCCTCAACTTCCCACTGCCCTCCCCTCAGGGTAGCATTTTCCTGTCCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAACTTCCCACTGCCCTCCCCTCAGGGTAGCATTTTCCTGTCCT  792

seq1  TTTGAAGTCAGCAGGGCCATCTAATTTGATTTGGTCTGTGACACACGAAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTCAGCAGGGCCATCTAATTTGATTTGGTCTGTGACACACGAAC  842

seq1  AGAAGGGACATCTGTGGACTGTAGCTCTGAAGCTGAATCACTCATCAGGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACATCTGTGGACTGTAGCTCTGAAGCTGAATCACTCATCAGGA  892

seq1  TTGGGGCCGTGCCAAGAAAATTCATCTCATATTTCTGTGAAACCACTCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCGTGCCAAGAAAATTCATCTCATATTTCTGTGAAACCACTCAG  942

seq1  CCCAATTCCAGGCCTTCTGCCATTAGCTTCCTAACACAATGGCTTCACAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCCAGGCCTTCTGCCATTAGCTTCCTAACACAATGGCTTCACAG  992

seq1  TTCACAGAGAGGAACCTGCACTCCAGAAGGATGAGAAAGTGAAAACTTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGAGGAACCTGCACTCCAGAAGGATGAGAAAGTGAAAACTTGG  1042

seq1  AAGGCTGCCCTTGCCTCGATTGACGCTAAAATATACCACAAGCCACTCAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCCCTTGCCTCGATTGACGCTAAAATATACCACAAGCCACTCAT  1092

seq1  TGTCAAAGCAGTGTGGTGATAGGAAAGGAAGAGGTGAGTCAGAGACAGGA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGCAGTGTGGTGATAGGAAAGGAAGAGGTGAGTCAGAGACAGGA  1142

seq1  GCTAGATACACATCCCAGAATTC  1161
      |||||||||||||||||||||||
seq2  GCTAGATACACATCCCAGAATTC  1165

seq1: chr9_122150225_122150886
seq2: B6Ng01-334L24.g_74_735

seq1  GAATTCTGAGTCATATGACTGCATTACTATTCAAAGATGACACACGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTCATATGACTGCATTACTATTCAAAGATGACACACGTGGA  50

seq1  TTAACGGAAAGCACACTCCTCCCTGGAAATGCCTCTCTAGTTTCCATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGGAAAGCACACTCCTCCCTGGAAATGCCTCTCTAGTTTCCATATG  100

seq1  CTTTTGACTAACATCAAAATGAAATGGTGTCAAAAGACAGATACCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACTAACATCAAAATGAAATGGTGTCAAAAGACAGATACCAATAA  150

seq1  AGCTTCCTACTGGTAACCACATGAAAATACAGAGGCTGGAGCTGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTACTGGTAACCACATGAAAATACAGAGGCTGGAGCTGGCTCAG  200

seq1  TGGGTAAAGTATCCACTGTGCAAGTGTGGGGATGTGAGTTCAAATCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGTATCCACTGTGCAAGTGTGGGGATGTGAGTTCAAATCCCCA  250

seq1  CAGCACTCCTAAGGACAGATGTGGGAGCACACACGTGTAATCCCCGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCCTAAGGACAGATGTGGGAGCACACACGTGTAATCCCCGAATC  300

seq1  CTATCAGCAGAGACAGGTCAGCTAGTGATCGGATCAGCAAACCTGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGCAGAGACAGGTCAGCTAGTGATCGGATCAGCAAACCTGGGTGG  350

seq1  GGTATACAGCAGCAAACAAGAGTGTCTCAAATGAGGTGGAAGGTGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACAGCAGCAAACAAGAGTGTCTCAAATGAGGTGGAAGGTGAGGAG  400

seq1  TGTCACTTGTGACTGTCTGACAGCCACACATGTGCTATGCCATGCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGTGACTGTCTGACAGCCACACATGTGCTATGCCATGCATGTG  450

seq1  CCTCACACACATGCATGTGCACTCTCACACCGATTCCCCTGGAGGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACACATGCATGTGCACTCTCACACCGATTCCCCTGGAGGAGCAC  500

seq1  AGTTTCTCTAAAAACCTTGACTAAGATGTGTGCAATACAGGAGAGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTAAAAACCTTGACTAAGATGTGTGCAATACAGGAGAGCTGAG  550

seq1  GAGGAATGCCTAGGATCTGTCCTTCCTCTCAGGATAAAATGACCAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGCCTAGGATCTGTCCTTCCTCTCAGGATAAAATGACCAACTAA  600

seq1  CACCTCCTGTTATTCTCACTTGTGAATTTGTACACATGCTTGAGTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGTTATTCTCACTTGTGAATTTGTACACATGCTTGAGTGCTTC  650

seq1  TGTGTGTGTGTG  662
      ||||||||||||
seq2  TGTGTGTGTGTG  662