BAC Information

Click to search

BAC

Clone NameB6Ng01-334O12
Chromosome9 (Build37)
Map Location 80,617,541 - 80,717,765
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334O12.bB6Ng01-334O12.g
ACCGA120293GA120294
length6061,201
definitionB6Ng01-334O12.b B6Ng01-334O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,717,160 - 80,717,765)(80,617,541 - 80,618,759)
sequence
gaattctttgttcatgagctgtatcttttctctgttctttcaaagtatcc
catcatcgttataggtgtgttatagggcctggtgtctctcctttttcaaa
aactgtttgaaatctttgctaagtgtcccatatctttaaaatgcataatt
acttcattttggctactaaacacaatggcactgaaccagctatttgatat
cagggaacaaataaacatttctatatctagatgtgaccagctactgttta
aagtcaatctcaaagctggacttgatggtgtatgcctgtgatgctagcac
ttgccaggtagggttaaggggatcagcatttctaagctagacaggtctgc
ctagagaggccctgccccacaaagaagagtaaaagaagcactcagtctca
aaataagcactgatagcactttgatcctcatctggcagtttaaatattac
ataattatcccatggggtgagatttgaaggtacttgcaaagaagaagatc
tataaaaatgtgtttgacaaattaataggtactttacagttatttgtgga
atcaatggattaatcaggctctggattcttgcttgtgaggtgtgtgtgtg
tgtgtg

gaattctagcaatgtgcatatattagagtggccatgtagcatacctgtga
tcttggattttgcttattaagtaaagattttattgccttctgtggtttca
taaacatttacaacttcaatttagttacaaatcttatataagcaatatta
tgtaatagacacaataaagataaagaatgatatgtttacaaatcgatgaa
tttgcatattatctgctttcaaatctttgtatacataagtcacactacta
taatcatgaacatataattgtggccattttttttaatgttatatacttct
attgtcttctagaattactgtgtttaatgactgcagcatatgctacccaa
aacatgaatagcatttatctgaacttgttttgctaaaacactaccatttt
acttcttaatctgaataattctacagagaaccttgttctagatattacta
tttgcatgtttcagatgtttctttcttgtgtcagcctgttgcaacaaagc
aatattatctgtatatttgaatcatctggagacttctttttaaggtttgc
cataaagattctggttaaatttgatcatgttaaatcataagtatcaggat
ttaataatcttaccagtgtctagagatgggggaaggaagaggtattgaag
gaaataaggatccacgggaaggggtttattgtcaagttatttcacctttg
tctcatgttcatatgtcattgtgtccactccaaacccagtcaaattgacc
agctgctggtttcggggcagggcatatctctcacatgtgttagggccaca
aacatttgggcaaaaacctaagcctcttcagtcacacctacatcacagag
tcaaaatatatgtgtttaaatagtactacaaagtgcctgtgagctccagg
ggaatactggtttcacttctactggctccaaaggaaatgattctctgagt
tctatttccccataatggaggaagtagagtagggtatcctcaggagcctt
tcacagaccatgtagtagcagtagatagcatattcagaaatgtttttata
agccatatgccttatcgccatgtttaccagcacctatacatacatgaatg
atgtgtatggaatccatattggtctaattcttatcatttcaatctgtaaa
acagacttggcctttctatgctgagtccagatctgcttgactccatcttc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80717160_80717765
seq2: B6Ng01-334O12.b_48_653 (reverse)

seq1  CACACACACACACACACCTCACAAGCAAGAATCCAGAGCCTGATTAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACCTCACAAGCAAGAATCCAGAGCCTGATTAATCC  50

seq1  ATTGATTCCACAAATAACTGTAAAGTACCTATTAATTTGTCAAACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCCACAAATAACTGTAAAGTACCTATTAATTTGTCAAACACATT  100

seq1  TTTATAGATCTTCTTCTTTGCAAGTACCTTCAAATCTCACCCCATGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGATCTTCTTCTTTGCAAGTACCTTCAAATCTCACCCCATGGGAT  150

seq1  AATTATGTAATATTTAAACTGCCAGATGAGGATCAAAGTGCTATCAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTAATATTTAAACTGCCAGATGAGGATCAAAGTGCTATCAGTGC  200

seq1  TTATTTTGAGACTGAGTGCTTCTTTTACTCTTCTTTGTGGGGCAGGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAGACTGAGTGCTTCTTTTACTCTTCTTTGTGGGGCAGGGCCT  250

seq1  CTCTAGGCAGACCTGTCTAGCTTAGAAATGCTGATCCCCTTAACCCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCAGACCTGTCTAGCTTAGAAATGCTGATCCCCTTAACCCTACC  300

seq1  TGGCAAGTGCTAGCATCACAGGCATACACCATCAAGTCCAGCTTTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGCTAGCATCACAGGCATACACCATCAAGTCCAGCTTTGAGAT  350

seq1  TGACTTTAAACAGTAGCTGGTCACATCTAGATATAGAAATGTTTATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAAACAGTAGCTGGTCACATCTAGATATAGAAATGTTTATTTGT  400

seq1  TCCCTGATATCAAATAGCTGGTTCAGTGCCATTGTGTTTAGTAGCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATATCAAATAGCTGGTTCAGTGCCATTGTGTTTAGTAGCCAAAA  450

seq1  TGAAGTAATTATGCATTTTAAAGATATGGGACACTTAGCAAAGATTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATTATGCATTTTAAAGATATGGGACACTTAGCAAAGATTTCAA  500

seq1  ACAGTTTTTGAAAAAGGAGAGACACCAGGCCCTATAACACACCTATAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTGAAAAAGGAGAGACACCAGGCCCTATAACACACCTATAACG  550

seq1  ATGATGGGATACTTTGAAAGAACAGAGAAAAGATACAGCTCATGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGATACTTTGAAAGAACAGAGAAAAGATACAGCTCATGAACAAA  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606


seq1: chr9_80617541_80618759
seq2: B6Ng01-334O12.g_66_1266

seq1  GAATTCTAGCAATGTGCATATATTAGAGTGGCCATGTAGCATACCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCAATGTGCATATATTAGAGTGGCCATGTAGCATACCTGTGA  50

seq1  TCTTGGATTTTGCTTATTAAGTAAAGATTTTATTGCCTTCTGTGGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATTTTGCTTATTAAGTAAAGATTTTATTGCCTTCTGTGGTTTCA  100

seq1  TAAACATTTACAACTTCAATTTAGTTACAAATCTTATATAAGCAATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTACAACTTCAATTTAGTTACAAATCTTATATAAGCAATATTA  150

seq1  TGTAATAGACACAATAAAGATAAAGAATGATATGTTTACAAATCGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGACACAATAAAGATAAAGAATGATATGTTTACAAATCGATGAA  200

seq1  TTTGCATATTATCTGCTTTCAAATCTTTGTATACATAAGTCACACTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATTATCTGCTTTCAAATCTTTGTATACATAAGTCACACTACTA  250

seq1  TAATCATGAACATATAATTGTGGCCATTTTTTTTAATGTTATATACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGAACATATAATTGTGGCCATTTTTTTTAATGTTATATACTTCT  300

seq1  ATTGTCTTCTAGAATTACTGTGTTTAATGACTGCAGCATATGCTACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCTAGAATTACTGTGTTTAATGACTGCAGCATATGCTACCCAA  350

seq1  AACATGAATAGCATTTATCTGAACTTGTTTTGCTAAAACACTACCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATAGCATTTATCTGAACTTGTTTTGCTAAAACACTACCATTTT  400

seq1  ACTTCTTAATCTGAATAATTCTACAGAGAACCTTGTTCTAGATATTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAATCTGAATAATTCTACAGAGAACCTTGTTCTAGATATTACTA  450

seq1  TTTGCATGTTTCAGATGTTTCTTTCTTGTGTCAGCCTGTTGCAACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTTTCAGATGTTTCTTTCTTGTGTCAGCCTGTTGCAACAAAGC  500

seq1  AATATTATCTGTATATTTGAATCATCTGGAGACTTCTTTTTAAGGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCTGTATATTTGAATCATCTGGAGACTTCTTTTTAAGGTTTGC  550

seq1  CATAAAGATTCTGGTTAAATTTGATCATGTTAAATCATAAGTATCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGATTCTGGTTAAATTTGATCATGTTAAATCATAAGTATCAGGAT  600

seq1  TTAATAATCTTACCAGTGTCTAGAGATGGGGGAAGGAAGAGGTATTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCTTACCAGTGTCTAGAGATGGGGGAAGGAAGAGGTATTGAAG  650

seq1  GAAATAAGGATCCACGGGAAGGGGTTTATTGTCAAGTTATTTCACCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGGATCCACGGGAAGGGGTTTATTGTCAAGTTATTTCACCTTTG  700

seq1  TCTCATGTTCATATGTCATTGTGTCCACTCCAAACCCAGTCAAATTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTCATATGTCATTGTGTCCACTCCAAACCCAGTCAAATTGACC  750

seq1  AGCTGCTGGTTTCGGGGCAGGGCATATCTCTCACATGTGTTAGGGCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGTTTCGGGGCAGGGCATATCTCTCACATGTGTTAGGGCCACA  800

seq1  AACATTTGGGCAAAAACCTAAGCCTCTTCAGTCACACCTACATCACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGGCAAAAACCTAAGCCTCTTCAGTCACACCTACATCACAGAG  850

seq1  TCAAAATATATGTGTTTAAATAGTACTACAAAGTGCCTGTGAGCTCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATATGTGTTTAAATAGTACTACAAAGTGCCTGTGAGCTCCAGG  900

seq1  GGAATACTGGTTTCACTTCTACTGGCTCCAAAAGGAAAATGATTCTCTGA  950
      ||||||||||||||||||||||||||||||||  | ||||||||||||||
seq2  GGAATACTGGTTTCACTTCTACTGGCTCCAAA--GGAAATGATTCTCTGA  948

seq1  GTTCTATTTCCCCCATAATGGAGGAAGTAGAGTAGGGGTATCCTCAGGGA  1000
      ||||||||| |||||||||||||||||||||||| ||||||||||| |||
seq2  GTTCTATTT-CCCCATAATGGAGGAAGTAGAGTA-GGGTATCCTCA-GGA  995

seq1  GCCTTTCACAGACCATGTTAGTAGCCAGTAAGATAGCATA-TCAGAAATG  1049
      ||||||||||||||||| |||||| |||| |||||||||| |||||||||
seq2  GCCTTTCACAGACCATG-TAGTAG-CAGT-AGATAGCATATTCAGAAATG  1042

seq1  -TTTTATAAAGCATAATGCTTTATCGCCATGTATACCAAGCA-CTATACA  1097
       ||||||||  ||| |||| |||||||||||| |||| |||| |||||||
seq2  TTTTTATAAGCCAT-ATGCCTTATCGCCATGTTTACC-AGCACCTATACA  1090

seq1  TTAACATGATGTATGTGTATGG-ATTCATATTGGTCTAATATTCTTATCA  1146
      |  ||||||   |||||||||| || ||||||||||||  ||||||||||
seq2  T--ACATGAATGATGTGTATGGAATCCATATTGGTCTA--ATTCTTATCA  1136

seq1  ATTTAAAAATCTGT-AGACAGACCCTGGCTCTTTCTTATGCTGGTGTTCG  1195
       ||    ||||||| | ||||| | |||| ||||| |||||||    || 
seq2  TTT---CAATCTGTAAAACAGA-CTTGGC-CTTTC-TATGCTG--AGTCC  1178

seq1  AGTTCTGCACTGACTCCATCTTCA  1219
      || |||||  ||||||||||||||
seq2  AGATCTGC-TTGACTCCATCTTCA  1201


| Home | SequenceCutter | Blast | Download |