BAC Information

Click to search

BAC

Clone NameB6Ng01-336J16
Chromosome9 (Build37)9 (Build37)
Map Location 19,632,368 - 19,633,5313,921,136 - 3,921,925
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859
Downstream geneOlfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J16.bB6Ng01-336J16.g
ACCGA121477GA121478
length1,1511,097
definitionB6Ng01-336J16.b B6Ng01-336J16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,632,368 - 19,633,531)(3,921,136 - 3,921,925)
sequence
gaattcatgtagagaagaattggaacatgtaataatttaccctgctttga
atctttttaaattccactatgctgccgtctaacttctgtcaccaacatat
tccttcactaatgtcaaagacagatgatattctttcctcagatgcaaatg
atgctgggccattatgcttcctattcaagcataagtcttatctcttctaa
tatattttatctctatctttctttttgtctccttgtcactttcaccatcc
tcatcagcatctcatgcagaagaggtggatttcaaatgagatattttgcc
ttcagctattggctagtgggattacatttttaagtgaatttagagagctt
tatgttgaatatatcatttttttatggaaatgacattagtgtctacaatg
taataatagaaacttaatggaaattaccttttgttacatagctcagtttt
tatttttgaactgtcctgaattaaaattcaatatgtgaagagccaacaca
tcgagttttaatttactgacatgaagaataatcatacacccatttattta
gacaggtaaaatgacaattccatgtatgcaggcaattctaggataatatt
tagccagagaccaaatggcaggaatatacatacatacatacatacataca
tacatacatacatacatgcatgcatacatacatacatacatctcagtaaa
ttaaggtcaaaattgagccattttataggattatgcaaaaggagtatgtg
atgctgaacagtcatttgttctgagaactgggatcaaatactatatggca
aaaagaaactacagtctgcctcaacagataacgatatttattagtacatg
caatgagagaaaacctctctcccaggggaaattaagaagcctccaaggta
ggtctagctcacatactctgtaagggtagaagaggtgcttgggaaagagg
aatttgagtcaattgtggagcctctgtgaggatctatgatctcttttcca
ggaaatatttgcttcatgggaaagcagattatatggactagtgcctctat
agcatttgactgtgagtgtgctgactgaaaggtggtcaggtcagctgtat
actatagggtttcctgttaacactgagacacacctatccatgcagcctgg
g
gaattcactgttcttaccatgttccccatcatgaagcagctggtctgata
gaaaggtggaatggctttttgaaggcacagctacagtaccaattaggtgg
caacagtatggagggctggggtaagaaaaagttcttcagaaggcagtata
tgctttgaatcagcatttgatatatggtacagtttccccatagacaggat
ccatggatccatgaattaaggggtgtaaaagggaatagttccactcacta
tcactcctattaccctctaggaaaactttgcttcctgtccccataactct
aggttctgttggccaaaagttttggttccagagcggggagtgctcctacc
aggagccataacaaacattccattgaactggaagctcagacttccccctg
gtcattttgggcttctcatccccttaaaccaacagactaaggaataacag
tgttaggaagggtgatagatccagattaccatggggaaattggattacct
atccacaattgaggtaaacaagattatgtctggaatgcaggagatccctt
cgggcatctcttagtactaccatgtcctgtgattaaagtcaatgggaaac
tacaccagcctaatccaagcaggatgacaaaggacacagacccatcagga
atgaaggtgtgggtcaatcctccaggaaaagagccaagatctgctgaggt
gcttgccaaggatgaaggaaatacagaatgggtagtagaggaaggtagtt
ataaataccaactaaggccacataaccagttgcagaaacaaggattataa
agtaatatgaatgcttctgtcttattttgctaacgaatacattcatcttt
cttccaatttctttaacatcaatttgtatttgagacactaaaaggatgtt
cccaaggaacaatgccccattgtaaatttacaaatgtgtttgcaattgta
cgaggaatagtatatcatgataggcatattcatgaccttgttattgtttc
atgtgaacatgagatattatttgtgtcaagtgacaggggtggatgttagt
gctatctggtgtcaacttgactgtatcttggatgaacttacagtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19632368_19633531
seq2: B6Ng01-336J16.b_42_1192

seq1  GAATTCATGTAGAGAAGAATTGGAACATGTAATAATTTACCCTGCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGAGAAGAATTGGAACATGTAATAATTTACCCTGCTTTGA  50

seq1  ATCTTTTTAAATTCCACTATGCTGCCGTCTAACTTCTGTCACCAACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTAAATTCCACTATGCTGCCGTCTAACTTCTGTCACCAACATAT  100

seq1  TCCTTCACTAATGTCAAAGACAGATGATATTCTTTCCTCAGATGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTAATGTCAAAGACAGATGATATTCTTTCCTCAGATGCAAATG  150

seq1  ATGCTGGGCCATTATGCTTCCTATTCAAGCATAAGTCTTATCTCTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGCCATTATGCTTCCTATTCAAGCATAAGTCTTATCTCTTCTAA  200

seq1  TATATTTTATCTCTATCTTTCTTTTTGTCTCCTTGTCACTTTCACCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTATCTCTATCTTTCTTTTTGTCTCCTTGTCACTTTCACCATCC  250

seq1  TCATCAGCATCTCATGCAGAAGAGGTGGATTTCAAATGAGATATTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCATCTCATGCAGAAGAGGTGGATTTCAAATGAGATATTTTGCC  300

seq1  TTCAGCTATTGGCTAGTGGGATTACATTTTTAAGTGAATTTAGAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATTGGCTAGTGGGATTACATTTTTAAGTGAATTTAGAGAGCTT  350

seq1  TATGTTGAATATATCATTTTTTTATGGAAATGACATTAGTGTCTACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAATATATCATTTTTTTATGGAAATGACATTAGTGTCTACAATG  400

seq1  TAATAATAGAAACTTAATGGAAATTACCTTTTGTTACATAGCTCAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGAAACTTAATGGAAATTACCTTTTGTTACATAGCTCAGTTTT  450

seq1  TATTTTTGAACTGTCCTGAATTAAAATTCAATATGTGAAGAGCCAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAACTGTCCTGAATTAAAATTCAATATGTGAAGAGCCAACACA  500

seq1  TCGAGTTTTAATTTACTGACATGAAGAATAATCATACACCCATTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTTTAATTTACTGACATGAAGAATAATCATACACCCATTTATTTA  550

seq1  GACAGGTAAAATGACAATTCCATGTATGCAGGCAATTCTAGGATAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTAAAATGACAATTCCATGTATGCAGGCAATTCTAGGATAATATT  600

seq1  TAGCCAGAGACCAAATGGCAGGAATATACATACATACATACATACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAGACCAAATGGCAGGAATATACATACATACATACATACATACA  650

seq1  TACATACATACATACATGCATGCATACATACATACATACATCTCAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACATACATGCATGCATACATACATACATACATCTCAGTAAA  700

seq1  TTAAGGTCAAAATTGAGCCATTTTATAGGATTATGCAAAAGGAGTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCAAAATTGAGCCATTTTATAGGATTATGCAAAAGGAGTATGTG  750

seq1  ATGCTGAACAGTCATTTGTTCTGAGAACTGGGATCAAATACTATATGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAACAGTCATTTGTTCTGAGAACTGGGATCAAATACTATATGGCA  800

seq1  AAAAGAAACTACAGTCTGCCTCAACAGATAACGATATTTATTAGTACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTACAGTCTGCCTCAACAGATAACGATATTTATTAGTACATG  850

seq1  CAATGAGAGAAAACCTCTCTCCCAGGGGAAATTAAGAAGCCTCCAAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAGAAAACCTCTCTCCCAGGGGAAATTAAGAAGCCTCCAAGGTA  900

seq1  GGTCTAGCTCACATACTCTGTAAGGGTAGAAGAGGTGCTTGGGAAAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGCTCACATACTCTGTAAGGGTAGAAGAGGTGCTTGGGAAAGAGG  950

seq1  AATTTGAGTCAATTGTGGAGCCTCTGTGAGGATCTATGATCTCTTTTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTGAGTCAATTGTGGAGCCTCTGTGAGGATCTATGATCTC-TTTTCC  999

seq1  AGGAAATATTTGCTTCAT-GGAAAGCAGATTATATTGGAACCTAGGTTGC  1049
      |||||||||||||||||| ||||||||||||||| ||||  ||||  |||
seq2  AGGAAATATTTGCTTCATGGGAAAGCAGATTATA-TGGA--CTAG--TGC  1044

seq1  CTCTATAAGCATTTGACTGTGAGTTGTGGCTGACTGAAAAGGTTGGTCCA  1099
      |||||| |||||||||||||||| ||| |||||||||||  | |||| ||
seq2  CTCTAT-AGCATTTGACTGTGAG-TGT-GCTGACTGAAA--GGTGGT-CA  1088

seq1  GGTCAGCTGTAATACTATA-GGTTTCCTGTTTAACAACTGAGACACA-CT  1147
      |||||||||| |||||||| ||||||||| ||||| ||||||||||| ||
seq2  GGTCAGCTGT-ATACTATAGGGTTTCCTG-TTAAC-ACTGAGACACACCT  1135

seq1  ATCAATGCCAGCCTGGG  1164
      ||| ||| |||||||||
seq2  ATCCATG-CAGCCTGGG  1151

seq1: chr9_3921136_3921925
seq2: B6Ng01-336J16.g_386_1162

seq1  TTTGGTTCCAGAGTGGGGAGTGCTCCTACCAGGAGCTACAATAAACATTC  50
      ||||||||||||| |||||||||||||||||||||| | || ||||||||
seq2  TTTGGTTCCAGAGCGGGGAGTGCTCCTACCAGGAGCCATAACAAACATTC  50

seq1  CATTGAACTGGAAGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAACG  100
      |||||||||||||||||||||||||||||||||||||||||||||| |  
seq2  CATTGAACTGGAAGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTCATC  100

seq1  CCCTTAAAACAACAGGCTAAGAAAGGAATAACAGTGTTAGGAGGGGTGAT  150
      |||||||| |||||| ||    |||||||||||||||||||| |||||||
seq2  CCCTTAAACCAACAGACT----AAGGAATAACAGTGTTAGGAAGGGTGAT  146

seq1  AGATTCAGATTACCATGGGGAAATTGGATTACCTCTCCACAATGGAGGTA  200
      |||| ||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AGATCCAGATTACCATGGGGAAATTGGATTACCTATCCACAATTGAGGTA  196

seq1  AGCAAGATTATGTCTGGAATGCAGGAGATCCCTTAGGGCATCTCTTAGTA  250
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAAGATTATGTCTGGAATGCAGGAGATCCCTTCGGGCATCTCTTAGTA  246

seq1  CTACCATGTCCTGTGATTAAAGTCAA-GGGAAATTACAACAGCCTAATCC  299
      |||||||||||||||||||||||||| |||||| |||| |||||||||||
seq2  CTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACACCAGCCTAATCC  296

seq1  AAGGTGGATGACAAAGGACAAAGACCCATCAGGAATGAAGGTATGGGTCA  349
      |||  ||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AAGCAGGATGACAAAGGACACAGACCCATCAGGAATGAAGGTGTGGGTCA  346

seq1  ATCCTCCAGGAGAACAGCCAAGACCTGCTGAGGTGCTTGCCGAGGGTGAA  399
      ||||||||||| || |||||||| ||||||||||||||||| ||| ||||
seq2  ATCCTCCAGGAAAAGAGCCAAGATCTGCTGAGGTGCTTGCCAAGGATGAA  396

seq1  GGAAATACAGAATGGGTAGTAGAGGACGGTAGTTATAGATAACAATTAAG  449
      |||||||||||||||||||||||||| |||||||||| ||| ||| ||||
seq2  GGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATACCAACTAAG  446

seq1  GCCATGTATCCAGTTGCAGAAACGAGGATTTTAAAGTAATATGAATGCTT  499
      ||||  || |||||||||||||| |||||| |||||||||||||||||||
seq2  GCCACATAACCAGTTGCAGAAACAAGGATTATAAAGTAATATGAATGCTT  496

seq1  CTGTCTTATTTTGCTAACAAATACATTTGTCTTTCTTCCAATTTCTTTAA  549
      |||||||||||||||||| ||||||||  |||||||||||||||||||||
seq2  CTGTCTTATTTTGCTAACGAATACATTCATCTTTCTTCCAATTTCTTTAA  546

seq1  CATCAATTGGTATTTAAGTTGAGGCACTAAAATGATGTTCCCAAGGGACA  599
      |||||||| ||||     ||||| |||||||| ||||||||||||| |||
seq2  CATCAATTTGTAT-----TTGAGACACTAAAAGGATGTTCCCAAGGAACA  591

seq1  TTGCCCCATTGTAAATTTCCAAATACATTTGTGATCGTACGAGGAATAGT  649
       ||||||||||||||||| |||||   ||||  || ||||||||||||| 
seq2  ATGCCCCATTGTAAATTTACAAATGTGTTTGCAATTGTACGAGGAATAG-  640

seq1  TATATCATGTTAGGCATATTCA-CACCTTGTTATTGTTTCATGTGAACAT  698
      ||||||||| ||||||||||||  ||||||||||||||||||||||||||
seq2  TATATCATGATAGGCATATTCATGACCTTGTTATTGTTTCATGTGAACAT  690

seq1  GAGATATTATTTGTGTCAAGTTGACAAGTGGTGGATTGTAGTGGCTATTC  748
      |||||||||||||||||||| |||| || |||||||  |||| |||||  
seq2  GAGATATTATTTGTGTCAAG-TGAC-AGGGGTGGATGTTAGT-GCTAT--  735

seq1  CTGGTTGTCAACTTGACTATATCTGGAATGAAC-TACAGTCCA  790
      |||| ||||||||||||| ||||| | |||||| |||||||||
seq2  CTGG-TGTCAACTTGACTGTATCTTGGATGAACTTACAGTCCA  777